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A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
Diel and Ontogenetic Variations in Vertical Distributions of Large Grazing Copepods During the Spring Phytoplankton Title Bloom in the Oyashio Region
Diel and ontogenetic variations in vertical distributions of large grazing copepods during the spring phytoplankton Title bloom in the Oyashio region Author(s) Yamaguchi, Atsushi; Onishi, Yuka; Kawai, Momoka; Omata, Aya; Kaneda, Mariko; Ikeda, Tsutomu Deep Sea Research Part II: Topical Studies in Oceanography, 57(17-18), 1691-1702 Citation https://doi.org/10.1016/j.dsr2.2010.03.013 Issue Date 2010-09 Doc URL http://hdl.handle.net/2115/43807 Type article (author version) File Information DSR2-57-17-18_1691-1702.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP 1 Diel and ontogenetic variations in vertical distributions of large grazing copepods 2 during the spring phytoplankton bloom in the Oyashio region 3 Atsushi Yamaguchi*, Yuka Onishi, Momoka Kawai, Aya Omata, Mariko Kaneda, 4 Tsutomu Ikeda 5 Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1 Minato, Hakodate, 6 Hokkaido 041-8611, Japan 7 *Corresponding author. 8 Tel: +81-138-40-5543 9 Fax: +81-138-40-5542 10 E-mail: [email protected] 1 11 Abstract 12 Short-term changes in vertical distributions of copepods during the spring 13 phytoplankton bloom were analyzed based on day and night vertically stratified 14 sampling (9 strata between 0-1000 m) with a fine-mesh (60 µm) VMPS in the Oyashio 15 region on five occasions: 8 March, 5, 11, 23 and 29 April 2007. Responses to the 16 bloom were varied and species-specific. Eucalanus bungii C3-C6 were resting around 17 400 m on 8 March. They had aroused from rest by 5 April, more completely for C6F 18 than for C3-C4. -
Fractal Distribution of an Oceanic Copepod Neocalanus Cristatus in the Subarctic Pacific
Journal of Oceanography Vol. 51, pp. 261 to 266. 1995 Fractal Distribution of an Oceanic Copepod Neocalanus cristatus in the Subarctic Pacific ATSUSHI TSUDA Ocean Research Institute, University of Tokyo 1-15-1, Minamidai, Nakano, Tokyo 164, Japan (Received 13 April 1994; in revised form 28 June 1994; accepted 30 August 1994) Horizontal distribution of the copepod Neocalanus cristatus was shown to be fractal on the scale between tens of meters and over 100 km. The fractal dimensions ranged between 1.68–1.89, significantly higher than those of oceanic turbulence and phytoplankton distribution. 1. Introduction Heterogeneity in the horizontal distribution of zooplankton has been recognized for many years (e.g. Hardy, 1936). The phenomenon, however, has seldom been described precisely, although zooplankton patchiness is relevant to many aspects of biological oceanography. Recent studies reveal that copepod patches do not exhibit characteristic lengths (Mackas and Boyd, 1979; Tsuda et al., 1993) and that the patterns of copepod distribution are self-similar and independent of the scale of observation (Tsuda et al., 1993). These findings suggest that copepod distributions may be fractal. Mandelbrot (1967) introduced the concept of fractals for temporally or spatially irregular phenomena which show self-similarities over a wide range of scales. Many fractal objects have been found in nature (Mandelbrot, 1982), and the theory has been applied to some ecological studies (Morse et al., 1985; Pennycuick and Kline, 1986; Dicke and Burrough, 1988; Sugihara and May, 1990; McKinney and Frederick, 1992). In the oceans, environmental turbulence itself has fractal facets in many aspects (Mandelbrot, 1982; Sreenivasan and Meneveau, 1986). -
Associations Between North Pacific Right Whales and Their Zooplanktonic Prey in the Southeastern Bering Sea
Vol. 490: 267–284, 2013 MARINE ECOLOGY PROGRESS SERIES Published September 17 doi: 10.3354/meps10457 Mar Ecol Prog Ser FREEREE ACCESSCCESS Associations between North Pacific right whales and their zooplanktonic prey in the southeastern Bering Sea Mark F. Baumgartner1,*, Nadine S. J. Lysiak1, H. Carter Esch1, Alexandre N. Zerbini2, Catherine L. Berchok2, Phillip J. Clapham2 1Biology Department, Woods Hole Oceanographic Institution, 266 Woods Hole Road, MS #33, Woods Hole, Massachusetts 02543, USA 2National Marine Mammal Laboratory, Alaska Fisheries Science Center, 7600 Sand Point Way NE, Seattle, Washington 98115, USA ABSTRACT: Due to the seriously endangered status of North Pacific right whales Eubalaena japonica, an improved understanding of the environmental factors that influence the species’ distribution and occurrence is needed to better assess the effects of climate change and industrial activities on the population. Associations among right whales, zooplankton, and the physical envi- ronment were examined in the southeastern Bering Sea during the summers of 2008 and 2009. Sampling with nets, an optical plankton counter, and a video plankton recorder in proximity to whales as well as along cross-isobath surveys indicated that the copepod Calanus marshallae is the primary prey of right whales in this region. Acoustic detections of right whales from sonobuoys deployed during the cross-isobath surveys were strongly associated with C. marshallae abun- dance, and peak abundance estimates of C. marshallae in 2.5 m depth strata near a tagged right whale ranged as high as 106 copepods m−3. The smaller Pseudocalanus spp. was higher in abun- dance than C. marshallae in proximity to right whales, but significantly lower in biomass. -
Seasonal Growth and Lipid Storage of the Circumgiobal, Subantarctic Copepod, Neocalanus Tonsus (Brady)
Deep-Sea Research, Vol. 36, No. 9, pp, 1309-1326, 1989. 0198-0149/89$3.00 + 0.00 Printed in Great Britain. ~) 1989 PergamonPress pie. Seasonal growth and lipid storage of the circumgiobal, subantarctic copepod, Neocalanus tonsus (Brady) MARK D. OHMAN,* JANET M. BRADFORDt and JOHN B. JILLETr~ (Received 20 January 1988; in revised form 14 April 1989; accepted 24 April 1989) Abstraet--Neocalanus tonsus (Brady) was sampled between October 1984 and September 1985 in the upper 1000 m of the water column off southeastern New Zealand. The apparent spring growth increment of copepodid stage V (CV) differed depending upon the constituent con- sidered: dry mass increased 208 Ixg, carbon 162 Ixg, wax esters 143 Itg, but nitrogen only 5 ltg. Sterols and phospholipids remained relatively constant over this interval. Wax esters were consistently the dominant lipid class present in CV's, increasing seasonally from 57 to 90% of total lipids. From spring to winter, total lipid content of CV's increased from 22 to 49% of dry mass. Nitrogen declined from 10.9 to 5.4% of CV dry mass as storage compounds (wax esters) increased in importance relative to structural compounds. Egg lipids were 66% phospholipids. Upon first appearance of males and females in deep water in winter, lipid content and composition did not differ from co-occurring CV's, confirming the importance of lipids rather than particulate food as an energy source for deep winter reproduction of this species. Despite contrasting life histories, N. tonsus and subarctic Pacific Neocalanus plumchrus CV's share high lipid content, a predominance of wax esters over triacylglycerols as storage lipids, and similar wax ester fatty acid and fatty alcohol composition. -
Foraging Radii and Energetics of Least Auklets (Aethia Pusilla) Breeding on Three Bering Sea Islands
647 Foraging Radii and Energetics of Least Auklets (Aethia pusilla) Breeding on Three Bering Sea Islands Bryan S. Obst1·* Robert W. Russell2·t 2 George L. Hunt, Jr. ·; Zoe A. Eppler·§ Nancy M. Harrison2·ll 1Departmem of Biology, University of California, Los Angeles, California 90024; 2Depanment of Ecology and Evolutionary Biology, University of California, Irvine, California 92717 Accepted 11/18/94 Abstract We studied the relationship between the foraging radius and energy economy of least auklets (Aethia pusilla) breeding in colonies on three islands in the Bering Sea (St. Lawrence, St. Matthew, and St. George Islands). The distan:ce to which auklets commuted on foraging trips varied by more than an order of magnitude (5-56 km), but mean field metabolic rate (FMR) did not vary significantly among birds from the three islands. These observations indicate that allocation to various compartments of time and energy budgets is flexible and suggest that least auklets may have a preferred level ofdaily energy expenditure that is simi lar across colonies. We modeled the partitioning of energy to various activities and hypothesize that the added cost of commuting incurred by auktets from St. Lawrence Island (foraging radius, 56 km) was offiet by reduced energy costs while foraging at sea. Data on bird diets and prey abundances indicated that aukletsfrom St. Lawrence Island fed on larger, more energy-rich copepods than did aukletsfrom St. Matthew island (foraging radius, 5 km) but that depth-aver aged prey density did not differ significantly between the birds' principal forag ing areas. However, previous studies have indicated that zooplankton abun dance is vertically compressed into near-surface layers in stratified waters off St. -
A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off Fort Lauderdale, Florida
Nova Southeastern University NSUWorks HCNSO Student Theses and Dissertations HCNSO Student Work 6-1-2010 A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off orF t Lauderdale, Florida Jessica L. Bostock Nova Southeastern University, [email protected] Follow this and additional works at: https://nsuworks.nova.edu/occ_stuetd Part of the Marine Biology Commons, and the Oceanography and Atmospheric Sciences and Meteorology Commons Share Feedback About This Item NSUWorks Citation Jessica L. Bostock. 2010. A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off Fort Lauderdale, Florida. Master's thesis. Nova Southeastern University. Retrieved from NSUWorks, Oceanographic Center. (92) https://nsuworks.nova.edu/occ_stuetd/92. This Thesis is brought to you by the HCNSO Student Work at NSUWorks. It has been accepted for inclusion in HCNSO Student Theses and Dissertations by an authorized administrator of NSUWorks. For more information, please contact [email protected]. Nova Southeastern University Oceanographic Center A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current off Fort Lauderdale, Florida By Jessica L. Bostock Submitted to the Faculty of Nova Southeastern University Oceanographic Center in partial fulfillment of the requirements for the degree of Master of Science with a specialty in: Marine Biology Nova Southeastern University June 2010 1 Thesis of Jessica L. Bostock Submitted in Partial Fulfillment of the Requirements for the Degree of Masters of Science: Marine Biology Nova Southeastern University Oceanographic Center June 2010 Approved: Thesis Committee Major Professor :______________________________ Amy C. Hirons, Ph.D. Committee Member :___________________________ Alexander Soloviev, Ph.D. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Bioscien Ceslibr Aryunive Rsityof Alaskaf Airbank S
Early life history of Metridia pacifica brodsky (Copepoda: Calanoida) from the southeastern Bering Sea and Gulf of Alaska Item Type Thesis Authors Pinchuk, Alexei I. Download date 07/10/2021 06:44:04 Link to Item http://hdl.handle.net/11122/5039 EARLY LIFE HISTORY OF METRIDIA PACIFICA BRODSKY, (COPEPODA: CALONIDA) FORM THE SOUTHEASTERN BERING SEA AND GULF OF ALASKA By: Alexei I. Pincuck BIOSCIENCES LIBRARYUNIVERSITY OF ALASKA FAIRBANKS EARLY LIFE HISTORY OF METRIDIA PACIFICA BRODSKY, (COPEPODA: CALANOIDA) FROM THE SOUTHEASTERN BERING SEA AND GULF OF ALASKA By Alexei I. Pinchuk RECOMMENDED: SjLiSitr Advisory Committee Chair /JjrUlsiA*- C i Program Head APPPROVED: Dean, School of Fisheries and Ocean Sciences Dean of the Graduate School Date EARLY LIFE HISTORY OF METRIDIA PACIFICA BRODSKY, (COPEPODA CALANOIDA) FROM THE SOUTHEASTERN BERING SEA AND GULF OF ALASKA A THESIS Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the'Degree of MASTER OF SCIENCE By Alexei I, Pinchuk Fairbanks, Alaska BIOSCI August 1997 QL 444 €72 P56 1997 BIOSCIENCES LIBRARY 3 ABSTRACT The ontogenetic morphological changes of naupliar stages of Metrldia pacifica, an important prey taxon for larval walleye pollock, were described to facilitate their identification from field samples and to clarify some uncertainties in existing descriptions of co-occurring genera. Clutch sizes and sperm storage potential were determined for females captured from the southeastern Bering Sea and Gulf of Alaska. None of the females produced more than one egg clutch in captivity. The mean clutch size was 12-13 eggs.d-1 for females from both sites and there was no relationship between body size and number of eggs per clutch or egg diameter, Intermolt periods for the egg through N IV stages were 4 9-120 hours for animals reared at 3°C, 33-69 hours at 6°C and 27-74 hours at 9°C. -
Calanus Helgolandicus (Copepoda, Calanoida) Along the Iberian and Moroccan Slope S
............. HEL-G;L~NDERM--EiIES UN17~RSU JH U NG E N .......... Helgol~nder Meeresunters. 50 457-475 (1996) Population structure and reproduction of Calanus helgolandicus (Copepoda, Calanoida) along the Iberian and Moroccan slope S. St6hr*, K. Schulz 1. & H.-Ch. John* Zoologisches Institut und Museum der Universit~t Hamburg; Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany ABSTRACT: During three cruises, carried out in March 1991, October 1991, and January 1992 off the Iberian Peninsula and Morocco, the abundant calanoid copepod Calanus helgolandicus (Claus) was collected from a depth of 1000 m to the surface. Differences in depth preference were correla- ted with the life stage and geographically differing vertical salinity structures. In autumn and win- ter, only stage V copepodids (CV) and adults were found, in spring also younger copepodid stages. Within the range of the Mediterranean outflow water (MOW), a sharp decline of abundances of all stages was evident during all cruises. In autumn 1991, the bulk of the population was recorded south of the MOW; in winter 1992 north of it. During winter, numbers had declined by 70 %, supporting the idea that winter individuals represent the same generation as was encountered in autumn, and that they had been transported northwards. CV stages preferred the depth layer 400-800 m, in autumn and winter. Adults were found in autumn at the same depth south of the MOW, while they preferred the 0-400 m layers north of it. In winter, the abundance of adults increased, males prefer- red the 400-600 m depth layer, while females stayed at 200-400 m. -
AGUIDE to Frle DEVELOPMENTAL STAGES of COMMON COASTAL
A GUIDE TO frlE DEVELOPMENTAL STAGES OF COMMON COASTAL, GeORGES BANK AND GULF OF MAINE COPEPODS BY Janet A. Murphy and Rosalind E. Cohen National Marine Fisheries Service Northeast Fisheries Center Woods Hole Laboratory Woods Hole, MA 02543 Laboratory Reference No. 78-53 Table of Contents List of Plates i,,;i,i;i Introduction '. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 1 Acarti a cl aus; .. 2 Aca rtia ton sa .. 3 Aca rtia danae .. 4 Acartia long; rem; s co e"" 5 Aetidi us artllatus .. 6 A1teutha depr-e-s-s-a· .. 7 Calanu5 finmarchicus .............•............................ 8 Calanus helgolandicus ~ 9 Calanus hyperboreus 10 Calanus tenuicornis .......................•................... 11 Cal oca 1anus pavo .....................•....•....•.............. 12 Candaci a armata Ii II .. .. .. .. .. .. .. .. .. .. 13 Centropages bradyi............................................ 14 Centropages hama tus .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 15 ~ Centropages typi cus " .. " 0 16 Clausocalanus arcuicornis ..............................•..•... 17 Clytemnestra rostra~ta ................................•.•........ 18 Corycaeus speciosus........................................... 19 Eucalanus elongatu5 20 Euchaeta mar; na " . 21 Euchaeta norveg; ca III co .. 22 Euchirel1a rostrata . 23 Eurytemora ameri cana .......................................•.. 24 Eurytemora herdmani , . 25 Eurytemora hi rundoi des . 26 Halithalestris croni ..................•...................... -
Marine Biodiversity: Responding to the Challenges Posed by Climate Change, Fisheries, and Aquaculture
e Royal Society of Canada Expert Panel Sustaining Canada’s Marine Biodiversity: Responding to the Challenges Posed by Climate Change, Fisheries, and Aquaculture REPORT February 2012 Prof. Isabelle M. Côté Prof. Julian J. Dodson Prof. Ian A. Fleming Prof. Je rey A. Hutchings (Chair) Prof. Simon Jennings Prof. Nathan J. Mantua Prof. Randall M. Peterman Dr. Brian E. Riddell Prof. Andrew J. Weaver, FRSC Prof. David L. VanderZwaag SUSTAINING CANADIAN MARINE BIODIVERSITY An Expert Panel Report on Sustaining Canada's Marine Biodiversity: Responding to the Challenges Posed by Climate Change, Fisheries, and Aquaculture Prepared by: The Royal Society of Canada: The Academies of Arts, Humanities and Sciences of Canada February 2012 282 Somerset Street West, Ottawa ON, K2P 0J6 • Tel: 613-991-6990 • www.rsc-src.ca | 1 Members of the Expert Panel on Sustaining Canadian Marine Biodiversity Isabelle M. Côté, Professor, Department of Biological Sciences, Simon Fraser University Julian J. Dodson, Professeur titulaire, Département de biologie, Université Laval Ian A. Fleming, Professor, Ocean Sciences Centre, Memorial University of Newfoundland Jeffrey A. Hutchings, Killam Professor and Canada Research Chair in Marine Conservation and Biodiversity, Department of Biology, Dalhousie University Panel Chair Simon Jennings, Principal Scientist, Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Lowestoft, UK, and Honorary Professor of Environmental Sciences at the University of East Anglia, UK Nathan J. Mantua, Associate Research Professor, Aquatic and Fisheries Sciences, University of Washington, USA Randall M. Peterman, Professor and Canada Research Chair in Fisheries Risk Assessment and Management, School of Resource and Environmental Management, Simon Fraser University Brian E. Riddell, PhD, CEO, Pacific Salmon Foundation, Vancouver, British Columbia Andrew J.