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A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
Associations Between North Pacific Right Whales and Their Zooplanktonic Prey in the Southeastern Bering Sea
Vol. 490: 267–284, 2013 MARINE ECOLOGY PROGRESS SERIES Published September 17 doi: 10.3354/meps10457 Mar Ecol Prog Ser FREEREE ACCESSCCESS Associations between North Pacific right whales and their zooplanktonic prey in the southeastern Bering Sea Mark F. Baumgartner1,*, Nadine S. J. Lysiak1, H. Carter Esch1, Alexandre N. Zerbini2, Catherine L. Berchok2, Phillip J. Clapham2 1Biology Department, Woods Hole Oceanographic Institution, 266 Woods Hole Road, MS #33, Woods Hole, Massachusetts 02543, USA 2National Marine Mammal Laboratory, Alaska Fisheries Science Center, 7600 Sand Point Way NE, Seattle, Washington 98115, USA ABSTRACT: Due to the seriously endangered status of North Pacific right whales Eubalaena japonica, an improved understanding of the environmental factors that influence the species’ distribution and occurrence is needed to better assess the effects of climate change and industrial activities on the population. Associations among right whales, zooplankton, and the physical envi- ronment were examined in the southeastern Bering Sea during the summers of 2008 and 2009. Sampling with nets, an optical plankton counter, and a video plankton recorder in proximity to whales as well as along cross-isobath surveys indicated that the copepod Calanus marshallae is the primary prey of right whales in this region. Acoustic detections of right whales from sonobuoys deployed during the cross-isobath surveys were strongly associated with C. marshallae abun- dance, and peak abundance estimates of C. marshallae in 2.5 m depth strata near a tagged right whale ranged as high as 106 copepods m−3. The smaller Pseudocalanus spp. was higher in abun- dance than C. marshallae in proximity to right whales, but significantly lower in biomass. -
A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off Fort Lauderdale, Florida
Nova Southeastern University NSUWorks HCNSO Student Theses and Dissertations HCNSO Student Work 6-1-2010 A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off orF t Lauderdale, Florida Jessica L. Bostock Nova Southeastern University, [email protected] Follow this and additional works at: https://nsuworks.nova.edu/occ_stuetd Part of the Marine Biology Commons, and the Oceanography and Atmospheric Sciences and Meteorology Commons Share Feedback About This Item NSUWorks Citation Jessica L. Bostock. 2010. A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current Off Fort Lauderdale, Florida. Master's thesis. Nova Southeastern University. Retrieved from NSUWorks, Oceanographic Center. (92) https://nsuworks.nova.edu/occ_stuetd/92. This Thesis is brought to you by the HCNSO Student Work at NSUWorks. It has been accepted for inclusion in HCNSO Student Theses and Dissertations by an authorized administrator of NSUWorks. For more information, please contact [email protected]. Nova Southeastern University Oceanographic Center A Comparison of Copepoda (Order: Calanoida, Cyclopoida, Poecilostomatoida) Density in the Florida Current off Fort Lauderdale, Florida By Jessica L. Bostock Submitted to the Faculty of Nova Southeastern University Oceanographic Center in partial fulfillment of the requirements for the degree of Master of Science with a specialty in: Marine Biology Nova Southeastern University June 2010 1 Thesis of Jessica L. Bostock Submitted in Partial Fulfillment of the Requirements for the Degree of Masters of Science: Marine Biology Nova Southeastern University Oceanographic Center June 2010 Approved: Thesis Committee Major Professor :______________________________ Amy C. Hirons, Ph.D. Committee Member :___________________________ Alexander Soloviev, Ph.D. -
Calanus Helgolandicus (Copepoda, Calanoida) Along the Iberian and Moroccan Slope S
............. HEL-G;L~NDERM--EiIES UN17~RSU JH U NG E N .......... Helgol~nder Meeresunters. 50 457-475 (1996) Population structure and reproduction of Calanus helgolandicus (Copepoda, Calanoida) along the Iberian and Moroccan slope S. St6hr*, K. Schulz 1. & H.-Ch. John* Zoologisches Institut und Museum der Universit~t Hamburg; Martin-Luther-King-Platz 3, D-20146 Hamburg, Germany ABSTRACT: During three cruises, carried out in March 1991, October 1991, and January 1992 off the Iberian Peninsula and Morocco, the abundant calanoid copepod Calanus helgolandicus (Claus) was collected from a depth of 1000 m to the surface. Differences in depth preference were correla- ted with the life stage and geographically differing vertical salinity structures. In autumn and win- ter, only stage V copepodids (CV) and adults were found, in spring also younger copepodid stages. Within the range of the Mediterranean outflow water (MOW), a sharp decline of abundances of all stages was evident during all cruises. In autumn 1991, the bulk of the population was recorded south of the MOW; in winter 1992 north of it. During winter, numbers had declined by 70 %, supporting the idea that winter individuals represent the same generation as was encountered in autumn, and that they had been transported northwards. CV stages preferred the depth layer 400-800 m, in autumn and winter. Adults were found in autumn at the same depth south of the MOW, while they preferred the 0-400 m layers north of it. In winter, the abundance of adults increased, males prefer- red the 400-600 m depth layer, while females stayed at 200-400 m. -
AGUIDE to Frle DEVELOPMENTAL STAGES of COMMON COASTAL
A GUIDE TO frlE DEVELOPMENTAL STAGES OF COMMON COASTAL, GeORGES BANK AND GULF OF MAINE COPEPODS BY Janet A. Murphy and Rosalind E. Cohen National Marine Fisheries Service Northeast Fisheries Center Woods Hole Laboratory Woods Hole, MA 02543 Laboratory Reference No. 78-53 Table of Contents List of Plates i,,;i,i;i Introduction '. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 1 Acarti a cl aus; .. 2 Aca rtia ton sa .. 3 Aca rtia danae .. 4 Acartia long; rem; s co e"" 5 Aetidi us artllatus .. 6 A1teutha depr-e-s-s-a· .. 7 Calanu5 finmarchicus .............•............................ 8 Calanus helgolandicus ~ 9 Calanus hyperboreus 10 Calanus tenuicornis .......................•................... 11 Cal oca 1anus pavo .....................•....•....•.............. 12 Candaci a armata Ii II .. .. .. .. .. .. .. .. .. .. 13 Centropages bradyi............................................ 14 Centropages hama tus .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. 15 ~ Centropages typi cus " .. " 0 16 Clausocalanus arcuicornis ..............................•..•... 17 Clytemnestra rostra~ta ................................•.•........ 18 Corycaeus speciosus........................................... 19 Eucalanus elongatu5 20 Euchaeta mar; na " . 21 Euchaeta norveg; ca III co .. 22 Euchirel1a rostrata . 23 Eurytemora ameri cana .......................................•.. 24 Eurytemora herdmani , . 25 Eurytemora hi rundoi des . 26 Halithalestris croni ..................•...................... -
Download Date 23/09/2021 09:50:15
Growth Rates Of Calanoid Copepods In The Northern Gulf Of Alaska, And Their Relationships To Temperature, Chlorophyll And Body Size Item Type Thesis Authors Liu, Hui Download date 23/09/2021 09:50:15 Link to Item http://hdl.handle.net/11122/8914 GROWTH RATES OF CALANOID COPEPODS IN THE NORTHERN GULF OF ALASKA, AND THEIR RELATIONSHIPS TO TEMPERATURE, CHLOROPHYLL AND BODY SIZE A DISSERTATION Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY By Hui Liu, B.S., M.S. Fairbanks, Alaska December 2006 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: 3251426 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. ® UMI UMI Microform 3251426 Copyright 2007 by ProQuest Information and Learning Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ProQuest Information and Learning Company 300 North Zeeb Road P.O. Box 1346 Ann Arbor, Ml 48106-1346 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. GROWTH RATES OF CALANOID COPEPODS IN THE NORTHERN GULF OF ALASKA, AND THEIR RELATIONSHIPS TO TEMPERATURE, CHLOROPHYLL AND BODY SIZE By Hui Liu RECOMMENDED: Advisory1 Head, ProgramffiMajine Sciences and Limnology APPROVED: s . -
Oceanographic Structure and Seasonal Variation Contribute To
1 Published in ICES J. Mar. Sci (2021) - https://doi.org/10.1093/icesjms/fsab127 2 Oceanographic structure and seasonal variation 3 contribute to high heterogeneity in mesozooplankton 4 over small spatial scales 5 6 Manoela C. Brandão1*, Thierry Comtet2, Patrick Pouline3, Caroline Cailliau3, Aline 7 Blanchet-Aurigny1, Marc Sourisseau4, Raffaele Siano4, Laurent Memery5, Frédérique 8 Viard6, and Flavia Nunes1* 9 10 1Ifremer Centre de Bretagne, DYNECO, Laboratory of Coastal Benthic Ecology, Plouzané, France 11 2Sorbonne Université, CNRS, UMR 7144 AD2M, Station Biologique de Roscoff, Place G. Teissier, 12 Roscoff, France 13 3Office Français de la Biodiversité, Parc Naturel Marin d'Iroise, Le Conquet, France 14 4Ifremer Centre de Bretagne, DYNECO, PELAGOS, Plouzané, France 15 5Laboratoire des Sciences de l'Environnement Marin (LEMAR), UMR CNRS/IFREMER/IRD/UBO 6539, 16 Plouzané, France 17 6ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France 18 *Corresponding authors: [email protected] (MCB), [email protected] (FN) 19 20 Abstract 21 The coastal oceans can be highly variable, especially near ocean fronts. The Ushant Front is the 22 dominant oceanographic feature in the Iroise Sea (NE Atlantic) during summer, separating warm 23 stratified offshore waters from cool vertically-mixed nearshore waters. Mesozooplankton 24 community structure was investigated over an annual cycle to examine relationships with 25 oceanographic conditions. DNA metabarcoding of COI and 18S genes was used in communities 26 from six sites along two cross-shelf transects. Taxonomic assignments of 380 and 296 OTUs (COI 27 and 18S respectively) identified 21 classes across 13 phyla. Meroplankton relative abundances 28 peaked in spring and summer, particularly for polychaete and decapod larvae respectively, 29 corresponding to the reproductive periods of these taxa. -
Onshore-Offshore Variations in Copepod Community Structure Off the Oregon Coast During the Summer Upwelling Season
MARINE ECOLOGY PROGRESS SERIES Vol. 249: 223–236, 2003 Published March 10 Mar Ecol Prog Ser Onshore-offshore variations in copepod community structure off the Oregon coast during the summer upwelling season Cheryl A. Morgan1,*, William T. Peterson2, Robert L. Emmett2 1Cooperative Institute for Marine Resources Studies, Oregon State University, Hatfield Marine Science Center, 2030 S. Marine Science Dr., Newport, Oregon 97365, USA 2National Marine Fisheries Service, Northwest Fisheries Science Center, Hatfield Marine Science Center, 2030 S. Marine Science Dr., Newport, Oregon 97365, USA ABSTRACT: During the summer of 1994, 1996, and 1997, we conducted hydrographic and plankton surveys of the upper 70 m in the nearshore, the continental shelf, and off-shelf oceanic waters off Oregon, USA. Copepod densities and biomass were estimated along 4 transects from each cruise. The on-shelf copepod biomass was 2.8 times greater than off-shelf biomass. Nonmetric multidimen- sional scaling identified an on-shelf and an off-shelf copepod community. The change in community composition usually occurred at or slightly offshore of the continental shelf break, defined here as 180 m water depth. Indicator-species analysis identified the subarctic neritic species, Calanus mar- shallae, Pseudocalanus mimus, and Acartia longiremis, as good indicators of continental shelf waters. ‘Warm water’ species Mesocalanus tenuicornis, Calocalanus styliremis, Clausocalanus spp., and Ctenocalanus vanus were indicators of off-shelf waters. The copepod communities off the coast of Oregon during the summer upwelling season reflect the origins of the dominating currents within each habitat. The coastal copepod community is subarctic neritic in origin, consistent with southward coastal flows. The offshore copepod community is a mixture of species with origins in the Transition Zone as well as species that are typical of the coastal region of the California Current off central and southern California. -
First Record of Blue-Pigmented Calanoid Copepod, Acrocalanus Sp. in the Whale Shark Habitat of Cendrawasih Bay, Papua
First record of blue-pigmented Calanoid Copepod, Acrocalanus sp. in the whale shark habitat of Cendrawasih Bay, Papua - Indonesia 1Diena Ardania, 2Yusli Wardiatno, 2Mohammad M. Kamal 1 Master Program in Aquatic Resources Management, Graduate School of Bogor Agricultural University, Jalan Raya Dramaga, Kampus IPB Dramaga, 16680 Dramaga, West Java, Indonesia; 2 Department of Aquatic Resources Management, Faculty of Fisheries and Marine Sciences, Bogor Agricultural University, Jalan Raya Dramaga, Kampus IPB Dramaga, 16680 Dramaga, West Java, Indonesia. Corresponding author: D. Ardania, [email protected] Abstract. Cendrawasih Bay is famous as a habitat of whale shark. One of the main foods of the whale shark in the bay is the blue-pigmented calanoid copepods. The presence of the blue-pigmented copepod has never been reported in Indonesia. This study was aimed to report the occurrence of a blue- pigmented calanoid copepod (Acrocalanus sp.) from Cendrawasih Bay, Papua as new record. The specimens were collected by means of bongo net, and preserved with 5% sea-buffered formaldeyide. Sample collection was conducted from October to December 2016. Morphological characters of the species are illustrated and described. This finding enhances marine biodiversity list of micro-crustacean in Indonesia, and add more distribution information of the species in the world. Key Words: blue-pigmented copepod, conservation, crustacea, new record, zooplankton. Introduction. Copepods are small aquatic crustaceans and their habitats range from freshwater to hyper saline condition. Copepod is an important link in the aquatic food chain especially for small fish to large fish like whale shark. Kamal et al (2016), Hacohen- Domene et al (2006) and Clark & Nelson (1997) reported that Copepoda was the dominant food of the whale shark (Rhincodon typus). -
First Record of Small Tropical Calanoid Copepod Parvocalanus Crassirostris (Copepoda, Calanoida, Paracalanidae) in the Adriatic Sea O
Research Article Mediterranean Marine Science Indexed in WoS (Web of Science, ISI Thomson) and SCOPUS The journal is available on line at http://www.medit-mar-sc.net DOI: http://dx.doi.org/10.12681/mms.1743 First record of small tropical calanoid copepod Parvocalanus crassirostris (Copepoda, Calanoida, Paracalanidae) in the Adriatic Sea O. VIDJAK, N. BOJANIĆ, Ž. NINČEVIĆ GLADAN, S. SKEJIĆ and B. GRBEC Institute of Oceanography and Fisheries, Šetalište Ivana Meštrovića 63, 21 000 Split, Croatia Corresponding author: [email protected] Handling Editor: Argyro Zenetos Received: 15 April 2016; Accepted: 26 August 2016; Published on line: 20 September 2016 Abstract In December 2014, the adult females and copepodites of an alien paracalanid copepod Parvocalanus crassirostris were identified in the Central Adriatic port of Šibenik. The most probable transmission vector for this small copepod is ballast water from cargo ships that is regularly discharged at these locations. This paper focuses on the morphology of P. crassirostris and the state of its population in the port of Šibenik. The possible path of introduction of Parvocalanus crassirostris into the Adriatic Sea is also discussed. Keywords: Parvocalanus crassirostris, marine copepods, alien species, ballast waters, Adriatic Sea Introduction extremely wide, with records obtained from subtropical and tropical coastal and estuarine environments of all Paracalanidae are common members of the cope- three oceans (Razouls et al., 2005-2016). So far, records pod community in marine environments, with genera of P. crassirostris from the Mediterranean Sea are rare. Paracalanus, Calocalanus and Mecynocera typically The species is known to reside in the NW Mediterranean, found over continental shelf waters worldwide (Boxshall Ionian Sea, Levantine Sea and in the NE Aegean Sea & Halsey, 2004). -
(Gulf Watch Alaska) Final Report the Seward Line: Marine Ecosystem
Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth Danielson Institute of Marine Science University of Alaska Fairbanks 905 N. Koyukuk Dr. Fairbanks, AK 99775-7220 Suzanne Strom Shannon Point Marine Center Western Washington University 1900 Shannon Point Road, Anacortes, WA 98221 Kathy Kuletz U.S. Fish and Wildlife Service 1011 East Tudor Road Anchorage, AK 99503 July 2018 The Exxon Valdez Oil Spill Trustee Council administers all programs and activities free from discrimination based on race, color, national origin, age, sex, religion, marital status, pregnancy, parenthood, or disability. The Council administers all programs and activities in compliance with Title VI of the Civil Rights Act of 1964, Section 504 of the Rehabilitation Act of 1973, Title II of the Americans with Disabilities Action of 1990, the Age Discrimination Act of 1975, and Title IX of the Education Amendments of 1972. If you believe you have been discriminated against in any program, activity, or facility, or if you desire further information, please write to: EVOS Trustee Council, 4230 University Dr., Ste. 220, Anchorage, Alaska 99508-4650, or [email protected], or O.E.O., U.S. Department of the Interior, Washington, D.C. 20240. Exxon Valdez Oil Spill Long-Term Monitoring Program (Gulf Watch Alaska) Final Report The Seward Line: Marine Ecosystem monitoring in the Northern Gulf of Alaska Exxon Valdez Oil Spill Trustee Council Project 16120114-J Final Report Russell R Hopcroft Seth L. -
Observing Life in the Sea
May 24, 2019 Observing Life in the Sea Sanctuaries MBON Monterey Bay, Florida Keys, and Flower Garden Banks National Marine Sanctuaries Principal Investigators: Frank Muller-Karger (USF) Francisco Chávez (MBARI) Illustration by Kelly Lance© 2016 MBARI Partners: E. Montes/M. Breitbart/A. Djurhuus/N. Sawaya1, K. Pitz/R. Michisaki2, Maria Kavanaugh3, S. Gittings/A. Bruckner/K. Thompson4, B.Kirkpatrick5, M. Buchman6, A. DeVogelaere/J. Brown7, J. Field8, S. Bograd8, E. Hazen8, A. Boehm9, K. O'Keife/L. McEachron10, G. Graettinger11, J. Lamkin12, E. (Libby) Johns/C. Kelble/C. Sinigalliano/J. Hendee13, M. Roffer14 , B. Best15 Sanctuaries MBON 1 College of Marine Science, Univ. of South Florida (USF), St Petersburg, FL; 2 MBARI/CenCOOS, CA; 3 Oregon State University, Corvallis, OR; 4 NOAA Office of National Marine Sanctuaries (ONMS), Washington, DC; 5 Texas A&M University (TAMU/GCOOS), College Station, TX; Monterey Bay, 6 NOAA Florida Keys National Marine Sanctuary (FKNMS), Key West, FL; Florida Keys, and 7 NOAA Monterey Bay National Marine Sanct. (MBNMS), Monterey, CA; Flower Garden Banks 8 NOAA SW Fisheries Science Center (SWFSC), La Jolla, CA, 9 Center for Ocean Solutions, Stanford University, Pacific Grove, CA; National Marine Sanctuaries 10 Florida Fish and Wildlife Research Institute (FWRI), St Petersburg, FL; 11NOAA Office of Response and Restoration (ORR), Seattle, WA; Principal Investigators: 12NOAA SE Fisheries Science Center (SEFSC), Miami, FL; Frank Muller-Karger (USF) 13NOAA Atlantic Oceanographic and Meteorol. Lab. (AOML), Miami,