Mammalian Clades
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Dating Placentalia: Morphological Clocks Fail to Close the Molecular-Fossil Gap
Puttick, M. N., Thomas, G. H., & Benton, M. J. (2016). Dating placentalia: Morphological clocks fail to close the molecular-fossil gap. Evolution, 70(4), 873-886. https://doi.org/10.1111/evo.12907 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1111/evo.12907 Link to publication record in Explore Bristol Research PDF-document © 2016 The Author(s). Evolution published by Wiley Periodicals, Inc. on behalf of The Society for the Study of Evolution. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ ORIGINAL ARTICLE doi:10.1111/evo.12907 Dating placentalia: Morphological clocks fail to close the molecular fossil gap Mark N. Puttick,1,2 Gavin H. Thomas,3 and Michael J. Benton1 1School of Earth Sciences, Life Sciences Building, Tyndall Avenue, University of Bristol, Bristol, BS8 1TQ, United Kingdom 2E-mail: [email protected] 3Department of Animal and Plant Sciences, Alfred Denny Building, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom Received January 31, 2015 Accepted March 7, 2016 Dating the origin of Placentalia has been a contentious issue for biologists and paleontologists. -
Evolution of the Patellar Sesamoid Bone in Mammals
A peer-reviewed version of this preprint was published in PeerJ on 21 March 2017. View the peer-reviewed version (peerj.com/articles/3103), which is the preferred citable publication unless you specifically need to cite this preprint. Samuels ME, Regnault S, Hutchinson JR. 2017. Evolution of the patellar sesamoid bone in mammals. PeerJ 5:e3103 https://doi.org/10.7717/peerj.3103 Evolution of the patellar sesamoid bone in mammals Mark E Samuels 1, 2 , Sophie Regnault 3 , John R Hutchinson Corresp. 3 1 Department of Medicine, University of Montreal, Montreal, Quebec, Canada 2 Centre de Recherche du CHU Ste-Justine, Montreal, Quebec, Canada 3 Structure & Motion Laboratory, Department of Comparative Biomedical Sciences, The Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom Corresponding Author: John R Hutchinson Email address: [email protected] The patella is a sesamoid bone located in the major extensor tendon of the knee joint, in the hindlimb of many tetrapods. Although numerous aspects of knee morphology are ancient and conserved among most tetrapods, the evolutionary occurrence of an ossified patella is highly variable. Among extant (crown clade) groups it is found in most birds, most lizards, the monotreme mammals and almost all placental mammals, but it is absent in most marsupial mammals as well as many reptiles. Here we integrate data from the literature and first-hand studies of fossil and recent skeletal remains to reconstruct the evolution of the mammalian patella. We infer that bony patellae most likely evolved between four to six times in crown group Mammalia: in monotremes, in the extinct multituberculates, in one or more stem-mammal genera outside of therian or eutherian mammals, and up to three times in therian mammals. -
Digital Reconstruction of the Inner Ear of Leptictidium Auderiense
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Published in "Paläontologische Zeitschrift 90(1): 153–171, 2016" which should be cited to refer to this work. Digital reconstruction of the inner ear of Leptictidium auderiense (Leptictida, Mammalia) and North American leptictids reveals new insight into leptictidan locomotor agility Irina Ruf1,2 • Virginie Volpato1,3 • Kenneth D. Rose4 • Guillaume Billet2,5 • Christian de Muizon5 • Thomas Lehmann1 Abstract Leptictida are basal Paleocene to Oligocene semicircular canals than the leptictids under study. Our eutherians from Europe and North America comprising estimations reveal that Leptictidium was a very agile ani- species with highly specialized postcranial features mal with agility score values (4.6 and 5.5, respectively) including elongated hind limbs. Among them, the Euro- comparable to Macroscelidea and extant bipedal saltatory pean Leptictidium was probably a bipedal runner or jum- placentals. Leptictis and Palaeictops have lower agility per. Because the semicircular canals of the inner ear are scores (3.4 to 4.1), which correspond to the more gener- involved in detecting angular acceleration of the head, their alized types of locomotion (e.g., terrestrial, cursorial) of morphometry can be used as a proxy to elucidate the agility most extant mammals. In contrast, the angular velocity in fossil mammals. Here we provide the first insight into magnitude predicted from semicircular canal angles sup- inner ear anatomy and morphometry of Leptictida based on ports a conflicting pattern of agility among leptictidans, but high-resolution computed tomography of a new specimen the significance of these differences might be challenged of Leptictidium auderiense from the middle Eocene Messel when more is known about intraspecific variation and the Pit (Germany) and specimens of the North American pattern of semicircular canal angles in non-primate Leptictis and Palaeictops. -
Learning About Mammals
Learning About Mammals The mammals (Class Mammalia) includes everything from mice to elephants, bats to whales and, of course, man. The amazing diversity of mammals is what has allowed them to live in any habitat from desert to arctic to the deep ocean. They live in trees, they live on the ground, they live underground, and in caves. Some are active during the day (diurnal), while some are active at night (nocturnal) and some are just active at dawn and dusk (crepuscular). They live alone (solitary) or in great herds (gregarious). They mate for life (monogamous) or form harems (polygamous). They eat meat (carnivores), they eat plants (herbivores) and they eat both (omnivores). They fill every niche imaginable. Mammals come in all shapes and sizes from the tiny pygmy shrew, weighing 1/10 of an ounce (2.8 grams), to the blue whale, weighing more than 300,000 pounds! They have a huge variation in life span from a small rodent living one year to an elephant living 70 years. Generally, the bigger the mammal, the longer the life span, except for bats, which are as small as rodents, but can live for up to 20 years. Though huge variation exists in mammals, there are a few physical traits that unite them. 1) Mammals are covered with body hair (fur). Though marine mammals, like dolphins and whales, have traded the benefits of body hair for better aerodynamics for traveling in water, they do still have some bristly hair on their faces (and embryonically - before birth). Hair is important for keeping mammals warm in cold climates, protecting them from sunburn and scratches, and used to warn off others, like when a dog raises the hair on its neck. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Mammalian Species 117
MAMMALIANSPECIES No. 117, pp. 14, 5 figs. Rhynchocyon chrysopygus. BY Galen B. Rathbun Published 8 June 1979 by the American Society of Mammalogists Rhynchocyon Peters, 1847 cyon chrysopygus apparently does not occur in the gallery forests of the Tana River, in the ground-water forest at Witu, or in the Rhynchocyon Peters, 1W7:36, type species Rhynchocyon cirnei dry bushlands between the Galana and Tana rivers. This ele- Peters by monotypy. phant-shrew's habitat is being cleared for exotic forest plantations Rhir~onaxThomas, 1918:370, type species Rh~nchoc~onchr~so- and agriculture all along the coast, resulting in a discontinuous pygus Gunther. and reduced distribution. It will re-occupy fallow agricultural land that is allowed to become overgrown with dense bush (Rathbun, CONTEXT AND CONTENT. Order Macroscelidea, Fam- ily Macroscelididae, Subfamily Rhynch~c~oninae.Corbet and unpublished data)' Hanks (1968) recognized three allopatric species of Rhynchocyon FOSSIL RECORD. As far as is known, the Macrosceli- (figure 1) for which they wrote the following key: didae have always been endemic to Africa (Patterson, 1%5). But- ler and Hopwood (1957) described Rhynchocyon clarki from the 1 Rump straw-colored, contrasting sharply with surround- early Miocene beds of Songhor, Kenya (near Lake Victoria). Ad- ing rufous pelage ----------.-------.-------R. chrysopygus ditional Miocene material from Rusinga Island, Kenya, has been Rump not straw-colored ---------.------.-------------------2 referred to this extinct form (Patterson, 1%5), which was smaller 2(1) Rump and posterior half of back with a pattern of dark than the extant species of Rhynchocyon. R. clarki contributes lines or spots on a yellowish-brown or rufous ground; significantly to the forest related fossil mammal fauna from Ru- top of head without a rufous tinge ._._._....._._R. -
Convergent Evolution in the Euarchontoglires
This is a repository copy of Convergent evolution in the Euarchontoglires. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/133262/ Version: Published Version Article: Morris, Philip James Rencher, Cobb, Samuel Nicholas Frederick orcid.org/0000-0002- 8360-8024 and Cox, Philip Graham orcid.org/0000-0001-9782-2358 (2018) Convergent evolution in the Euarchontoglires. Biology letters. 2018036. ISSN 1744-957X https://doi.org/10.1098/rsbl.2018.0366 Reuse This article is distributed under the terms of the Creative Commons Attribution (CC BY) licence. This licence allows you to distribute, remix, tweak, and build upon the work, even commercially, as long as you credit the authors for the original work. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Downloaded from http://rsbl.royalsocietypublishing.org/ on August 1, 2018 Evolutionary biology Convergent evolution in the rsbl.royalsocietypublishing.org Euarchontoglires Philip J. R. Morris1, Samuel N. F. Cobb2 and Philip G. Cox2 1Hull York Medical School, University of Hull, Hull HU6 7RX, UK Research 2Department of Archaeology and Hull York Medical School, University of York, York YO10 5DD, UK SNFC, 0000-0002-8360-8024; PGC, 0000-0001-9782-2358 Cite this article: Morris PJR, Cobb SNF, Cox PG. 2018 Convergent evolution in the Convergence—the independent evolution of similar phenotypes in distantly Euarchontoglires. -
Musculoskeletal Morphing from Human to Mouse
Procedia IUTAM Procedia IUTAM 00 (2011) 1–9 2011 Symposium on Human Body Dynamics Musculoskeletal Morphing from Human to Mouse Yoshihiko Nakamuraa,∗, Yosuke Ikegamia, Akihiro Yoshimatsua, Ko Ayusawaa, Hirotaka Imagawaa, and Satoshi Ootab aDepartment of Mechano-Informatics, Graduate School of Information and Science and Technology, University of Tokyo, 7-3-1, Hongo, Bunkyo-ku, Tokyo, Japan bBioresource Center, Riken, 3-1-1 Takanodai, Tsukuba-shi, Ibaragi, Japan Abstract The analysis of movement provides various insights of human body such as biomechanical property of muscles, function of neural systems, physiology of sensory-motor system, skills of athletic movements, and more. Biomechan- ical modeling and robotics computation have been integrated to extend the applications of musculoskeletal analysis of human movements. The analysis would also provide valuable means for the other mammalian animals. One of current approaches of post-genomic research focuses to find connections between the phenotype and the genotype. The former means the visible morphological or behavioral expression of an animal, while the latter implies its genetic expression. Knockout mice allows to study the developmental pathway from the genetic disorders to the behavioral disorders. Would musculoskeletal analysis of mice also offer scientific means for such study? This paper reports our recent technological development to build the musculoskeletal model of a laboratory mouse. We propose mapping the musculoskeletal model of human to a laboratory mouse based on the morphological similarity between the two mammals. Although the model will need fine adjustment based on the CT data or else, we can still use the mapped musculoskeletal model as an approximate model of the mouse’s musculoskeletal system. -
A New Genus of Stem Lagomorph (Mammalia: Glires) from the Middle Eocene of the Erlian Basin, Nei Mongol, China
Acta zoologica cracoviensia, 57(1-2): 29-42, Kraków, 31 December 2014 Ó Institute of Systematics and Evolution of Animals, Pol. Acad. Sci., Kraków doi:10.3409/azc.57_1-2.29 Zoobank Account:urn:lsid:zoobank.org:pub:22E831F0-4830-4649-9740-1BD6171983DD Anewgenusofstemlagomorph(Mammalia:Glires)fromthe MiddleEoceneoftheErlianBasin,NeiMongol,China £ucja FOSTOWICZ-FRELIK andQianLI Received: 15 October 2014. Accepted: 10 December 2014. Available online: 29 December 2014. FOSTOWICZ-FRELIK £., LI Q. 2014. A new genus of stem lagomorph (Mammalia: Glires) from the Middle Eocene of the Erlian Basin, Nei Mongol, China. Acta zool. cracov., 57(1-2): 29-42. Abstract. We report the discovery of Erenlagus anielae, a new genus and species of stem lagomorph from the lower part of the Middle Eocene Irdin Manha Formation at the Huhe- boerhe locality, Erlian Basin, Nei Mongol, China. The remains consist of isolated teeth; however, the material includes all loci except the incisors and P2. The new lagomorph is characterized by a small size and high degree of unilateral hypsodonty comparable to that of Aktashmys and slightly higher than that observed in the coeval and co-occurring Stre- nulagus. Further, it shows advanced root fusion, which exceeds even that in Gobiolagus. Although phylogenetic relationships of the Eocene lagomorphs from Asia are still not fully resolved, the dental characters of Erenlagus anielae suggest that it is most closely re- lated to Lushilagus danjingensis from the Middle Eocene of Henan, China and Ak- tashmys montealbus from the late Early Eocene of Kyrgyzstan. This stratigraphically well-constrained finding represents one of the lagomorph genera that appeared in the Eo- cene Glires paleobiodiversity reservoir, the Erlian Basin in Nei Mongol. -
Supplementary Material
Adaptation of mammalian myosin II sequences to body mass Mark N Wass*1, Sarah T Jeanfavre*1,2, Michael P Coghlan*1, Martin Ridout#, Anthony J Baines*3 and Michael A Geeves*3 School of Biosciences*, and School of Mathematics#, Statistics and Actuarial Science, University of Kent, Canterbury, UK 1. Equal contribution 2. Current address: Broad Institute, 415 Main Street, 7029-K, Cambridge MA 02142 3. Joint corresponding authors Key words: selection, muscle contraction, mammalian physiology, heart rate Address for correspondence: Prof M.A.Geeves School of Biosciences, University of Kent, Canterbury CT1 7NJ UK [email protected] tel 44 1227827597 Dr A J Baines School of Biosciences, University of Kent, Canterbury CT1 7NJ UK [email protected] tel 44 1227 823462 SUPPLEMENTARY MATERIAL Supplementary Table 1. Source of Myosin sequences and the mass of each species used in the analysis of Fig 1 & 2 Species Isoform Mass Skeletal Skeletal Embryonic Skeletal α- β-cardiac Perinatal Non- Non- Smooth Extraocular Slow (kg) 2d/x 2a 2b cardiac muscle A muscle B Muscle Tonic Human P12882 Q9UKX2 251757455 Q9Y623 P13533 P12883 P13535 P35579 219841954 13432177 110624781 599045671 68a Bonobo 675746236 397494570 675746242 675746226 397473260 397473262 675746209 675764569 675746138 675746206 675798456 45.5a Macaque 544497116 544497114 544497126 109113269 544446347 544446351 544497122 383408157 384940798 387541766 544497107 544465262 6.55b Tarsier 640786419 640786435 640786417 640818214 640818212 640786413 640796733 640805785 640786411 640822915 0.1315c -
Aspects of Tree Shrew Consolidated Sleep Structure Resemble Human Sleep
ARTICLE https://doi.org/10.1038/s42003-021-02234-7 OPEN Aspects of tree shrew consolidated sleep structure resemble human sleep Marta M. Dimanico1,4, Arndt-Lukas Klaassen1,2,4, Jing Wang1,3, Melanie Kaeser1, Michael Harvey1, ✉ Björn Rasch 2 & Gregor Rainer 1 Understanding human sleep requires appropriate animal models. Sleep has been extensively studied in rodents, although rodent sleep differs substantially from human sleep. Here we investigate sleep in tree shrews, small diurnal mammals phylogenetically close to primates, and compare it to sleep in rats and humans using electrophysiological recordings from frontal cortex of each species. Tree shrews exhibited consolidated sleep, with a sleep bout duration 1234567890():,; parameter, τ, uncharacteristically high for a small mammal, and differing substantially from the sleep of rodents that is often punctuated by wakefulness. Two NREM sleep stages were observed in tree shrews: NREM, characterized by high delta waves and spindles, and an intermediate stage (IS-NREM) occurring on NREM to REM transitions and consisting of intermediate delta waves with concomitant theta-alpha activity. While IS-NREM activity was reliable in tree shrews, we could also detect it in human EEG data, on a subset of transitions. Finally, coupling events between sleep spindles and slow waves clustered near the beginning of the sleep period in tree shrews, paralleling humans, whereas they were more evenly distributed in rats. Our results suggest considerable homology of sleep structure between humans and tree shrews despite the large difference in body mass between these species. 1 Department of Neuroscience and Movement Sciences, Section of Medicine, University of Fribourg, Fribourg, Switzerland. -
The Remarkable, Yet Not Extraordinary, Human Brain As a Scaled-Up Primate Brain and Its Associated Cost
The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost Suzana Herculano-Houzel1 Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil; and Instituto Nacional de Neurociência Translacional, Instituto Nacional de Ciência e Tecnologia/Ministério de Ciência e Tecnologia, 04023-900, Sao Paulo, Brazil Edited by Francisco J. Ayala, University of California, Irvine, CA, and approved April 12, 2012 (received for review February 29, 2012) Neuroscientists have become used to a number of “facts” about the The incongruity between our extraordinary cognitive abilities human brain: It has 100 billion neurons and 10- to 50-fold more glial and our not-that-extraordinary brain size has been the major cells; it is the largest-than-expected for its body among primates driving factor behind the idea that the human brain is an outlier, and mammals in general, and therefore the most cognitively able; an exception to the rules that have applied to the evolution of all it consumes an outstanding 20% of the total body energy budget other animals and brains. A largely accepted alternative expla- despite representing only 2% of body mass because of an increased nation for our cognitive superiority over other mammals has been metabolic need of its neurons; and it is endowed with an overde- our extraordinary brain size compared with our body size, that is, veloped cerebral cortex, the largest compared with brain size. our large encephalization quotient (8). Compared