Acta Protozool
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
University of Rhode Island DigitalCommons@URI Biological Sciences Faculty Publications Biological Sciences 9-26-2018 Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Christopher E. Lane Et Al Follow this and additional works at: https://digitalcommons.uri.edu/bio_facpubs Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla,* , David Bassb,c , Christopher E. Laned, Julius Lukese,f , Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj , Matthew W. Brownk,l, Fabien Burkim,PacoCardenas n , Ivan Cepi cka o, Lyudmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s , Bente Edvardsent , Yana Eglitu, Laure Guillouv, Vladimır Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Anna Karn- kowskaaa, Sergey Karpovh,ab, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,ab, Daniel J.G. Lahrac, Enrique Laraad,ae , Line Le Gallaf , Denis H. Lynnag,ah , David G. Mannai,aj, Ramon Massanaq, Edward A.D. Mitchellad,ak , Christine Morrowal, Jong Soo Parkam , Jan W. Pawlowskian, Martha J. Powellao, Daniel J. Richterap, Sonja Rueckertaq, Lora Shadwickar, Satoshi Shimanoas, Frederick W. Spiegelar, Guifre Torruellaat , Noha Youssefau, Vasily Zlatogurskyh,av & Qianqian Zhangaw a Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada b Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom -
Gooday, AJ, Schoenle, A., Dolan, JR
Please cite as: Gooday, A.J., Schoenle, A., Dolan, J.R., Arndt, H., Protist diversity and function in the dark ocean - challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists, European Journal of Protistology, 2020, Volume 50, https://doi.org/10.1016/j.ejop.2020.125721 Protist diversity and function in the dark ocean - challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists Andrew J. Goodaya,b, Alexandra Schoenlec, John R. Doland, Hartmut Arndtc* a National Oceanography Centre, University of Southampton Waterfront Campus, Southampton, UK b Life Sciences Department, Natural History Museum, Cromwell Road, London SW7 5BD, UK c University of Cologne, Institute of Zoology, General Ecology, 50674 Cologne, Germany dSorbonne Université, CNRS UMR 7093, Laboratoroire d'Océanographie de Villefranche- sur-Mer, Villefranche-sur-Mer, France *corresponding author. H. Arndt, Institute of Zoology, University of Cologne, Zuelpicher Straße 47b, 50674 Cologne, Germany. Telephone number: +49 221 470 3100; email: Hartmut.Arndt@uni- koeln.de Please cite as: Gooday, A.J., Schoenle, A., Dolan, J.R., Arndt, H., Protist diversity and function in the dark ocean - challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists, European Journal of Protistology, 2020, Volume 50, https://doi.org/10.1016/j.ejop.2020.125721 Abstract The dark ocean and the underlying deep seafloor together represent the largest environment on this planet, comprising about 80% of the oceanic volume and covering more than two- thirds of the Earth's surface, as well as hosting a major part of the total biosphere. -
Chasmostoma Massart, 1920 and Jenningsia Schaeffer, 1918
Protistology 1, 10-16 (1999) Protistology April, 1999 Australian records of two lesser known genera of heterotrophic euglenids – Chasmostoma Massart, 1920 and Jenningsia Schaeffer, 1918 W.J. Lee, R. Blackmore and D.J. Patterson School of Biological Sciences, University of Sydney, NSW 2006, Australia. Summary We report on Chasmostoma and Jenningsia, two genera of heterotrophic euglenids which have not been reported subsequent to their initial descriptions. Chasmostoma nieuportense was poorly described from Belgian coastal waters by Massart in 1920. A redescription is offered on the basis of material observed in a prawn farm in Queensland, Australia. The genus is distinguished by having an anterior cavity into which the flagellum may be withdrawn when the organism is challenged. Jenningsia is a peranemid genus described with a single emergent flagellum by Shaeffer in 1918. The genus was later redescribed by Lackey in 1940 as Peranemopsis. The recent assumptions that these authors overlooked a second flagellum now seem to be in error, and we assign organisms previously described as Peranema fusiforme and P. macrostoma, species of Peranema described with one emergent flagellum, and species in the genus Peranemopsis to the genus Jenningsia. Key words: Euglenida, Protozoa, Chasmostoma nieuportense, Jenningsia diatomophaga, Jenningsia fusiforme n. comb., Jenningsia macrostoma n. comb., Jenningsia curvicauda n. comb., Jenningsia deflexum n. comb., Jenningsia furcatum n. comb., Jenningsia glabrum n. comb., Jenningsia granulifera n. comb., Jenningsia kupfferi n. comb., Jenningsia limax n. comb., Jenningsia macer n. comb., Jenningsia nigrum n. comb., Jenningsia sacculus n. comb. Introduction tioned in any subsequent reviews of euglenids (Huber- Pestalozzi, 1955; Leedale, 1967; Larsen and Patterson, Heterotrophic flagellates may be significant medita- 1991). -
Morphostasis in a Novel Eukaryote Illuminates the Evolutionary Transition from Phagotrophy to Phototrophy: Description of Rapaza Viridis N
Yamaguchi et al. BMC Evolutionary Biology 2012, 12:29 http://www.biomedcentral.com/1471-2148/12/29 RESEARCH ARTICLE Open Access Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida) Aika Yamaguchi†, Naoji Yubuki† and Brian S Leander*† Abstract Background: Morphostasis of traits in different species is necessary for reconstructing the evolutionary history of complex characters. Studies that place these species into a molecular phylogenetic context test hypotheses about the transitional stages that link divergent character states. For instance, the transition from a phagotrophic mode of nutrition to a phototrophic lifestyle has occurred several times independently across the tree of eukaryotes; one of these events took place within the Euglenida, a large group of flagellates with diverse modes of nutrition. Phototrophic euglenids form a clade that is nested within lineages of phagotrophic euglenids and that originated through a secondary endosymbiosis with green algae. Although it is clear that phototrophic euglenids evolved from phagotrophic ancestors, the morphological disparity between species representing these different nutritional modes remains substantial. Results: We cultivated a novel marine euglenid, Rapaza viridis n. gen. et sp. ("green grasper”), and a green alga, Tetraselmis sp., from the same environment. Cells of R. viridis were comprehensively characterized with light microscopy, SEM, TEM, and molecular phylogenetic analysis of small subunit rDNA sequences. Ultrastructural and behavioral observations demonstrated that this isolate habitually consumes a specific strain of Tetraselmis prey cells and possesses a functional chloroplast that is homologous with other phototrophic euglenids. A novel feeding apparatus consisting of a reduced rod of microtubules facilitated this first and only example of mixotrophy among euglenids. -
Kingdom Chromista)
J Mol Evol (2006) 62:388–420 DOI: 10.1007/s00239-004-0353-8 Phylogeny and Megasystematics of Phagotrophic Heterokonts (Kingdom Chromista) Thomas Cavalier-Smith, Ema E-Y. Chao Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK Received: 11 December 2004 / Accepted: 21 September 2005 [Reviewing Editor: Patrick J. Keeling] Abstract. Heterokonts are evolutionarily important gyristea cl. nov. of Ochrophyta as once thought. The as the most nutritionally diverse eukaryote supergroup zooflagellate class Bicoecea (perhaps the ancestral and the most species-rich branch of the eukaryotic phenotype of Bigyra) is unexpectedly diverse and a kingdom Chromista. Ancestrally photosynthetic/ major focus of our study. We describe four new bicil- phagotrophic algae (mixotrophs), they include several iate bicoecean genera and five new species: Nerada ecologically important purely heterotrophic lineages, mexicana, Labromonas fenchelii (=Pseudobodo all grossly understudied phylogenetically and of tremulans sensu Fenchel), Boroka karpovii (=P. uncertain relationships. We sequenced 18S rRNA tremulans sensu Karpov), Anoeca atlantica and Cafe- genes from 14 phagotrophic non-photosynthetic het- teria mylnikovii; several cultures were previously mis- erokonts and a probable Ochromonas, performed ph- identified as Pseudobodo tremulans. Nerada and the ylogenetic analysis of 210–430 Heterokonta, and uniciliate Paramonas are related to Siluania and revised higher classification of Heterokonta and its Adriamonas; this clade (Pseudodendromonadales three phyla: the predominantly photosynthetic Och- emend.) is probably sister to Bicosoeca. Genetically rophyta; the non-photosynthetic Pseudofungi; and diverse Caecitellus is probably related to Anoeca, Bigyra (now comprising subphyla Opalozoa, Bicoecia, Symbiomonas and Cafeteria (collectively Anoecales Sagenista). The deepest heterokont divergence is emend.). Boroka is sister to Pseudodendromonadales/ apparently between Bigyra, as revised here, and Och- Bicoecales/Anoecales. -
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
J. Eukaryot. Microbiol., 52(5), 2005 pp. 399–451 r 2005 by the International Society of Protistologists DOI: 10.1111/j.1550-7408.2005.00053.x The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists SINA M. ADL,a ALASTAIR G. B. SIMPSON,a MARK A. FARMER,b ROBERT A. ANDERSEN,c O. ROGER ANDERSON,d JOHN R. BARTA,e SAMUEL S. BOWSER,f GUY BRUGEROLLE,g ROBERT A. FENSOME,h SUZANNE FREDERICQ,i TIMOTHY Y. JAMES,j SERGEI KARPOV,k PAUL KUGRENS,1 JOHN KRUG,m CHRISTOPHER E. LANE,n LOUISE A. LEWIS,o JEAN LODGE,p DENIS H. LYNN,q DAVID G. MANN,r RICHARD M. MCCOURT,s LEONEL MENDOZA,t ØJVIND MOESTRUP,u SHARON E. MOZLEY-STANDRIDGE,v THOMAS A. NERAD,w CAROL A. SHEARER,x ALEXEY V. SMIRNOV,y FREDERICK W. SPIEGELz and MAX F. J. R. TAYLORaa aDepartment of Biology, Dalhousie University, Halifax, NS B3H 4J1, Canada, and bCenter for Ultrastructural Research, Department of Cellular Biology, University of Georgia, Athens, Georgia 30602, USA, and cBigelow Laboratory for Ocean Sciences, West Boothbay Harbor, ME 04575, USA, and dLamont-Dogherty Earth Observatory, Palisades, New York 10964, USA, and eDepartment of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON N1G 2W1, Canada, and fWadsworth Center, New York State Department of Health, Albany, New York 12201, USA, and gBiologie des Protistes, Universite´ Blaise Pascal de Clermont-Ferrand, F63177 Aubiere cedex, France, and hNatural Resources Canada, Geological Survey of Canada (Atlantic), Bedford Institute of Oceanography, PO Box 1006 Dartmouth, NS B2Y 4A2, Canada, and iDepartment of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana 70504, USA, and jDepartment of Biology, Duke University, Durham, North Carolina 27708-0338, USA, and kBiological Faculty, Herzen State Pedagogical University of Russia, St. -
The Revised Classification of Eukaryotes
Published in Journal of Eukaryotic Microbiology 59, issue 5, 429-514, 2012 which should be used for any reference to this work 1 The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. MITCHELL,l SHARON E. MOZLEY-STANRIDGE,p LAURA W. PARFREY,q JAN PAWLOWSKI,r SONJA RUECKERT,s LAURA SHADWICK,t CONRAD L. SCHOCH,u ALEXEY SMIRNOVv and FREDERICK W. SPIEGELt aDepartment of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada, and bDepartment of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and cDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA, and dBiology Center and Faculty of Sciences, Institute of Parasitology, University of South Bohemia, Cˇeske´ Budeˇjovice, Czech Republic, and eZoology Department, Natural History Museum, London, SW7 5BD, United Kingdom, and fWadsworth Center, New York State Department of Health, Albany, New York, 12201, USA, and gDepartment of Biochemistry, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and hDepartment of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and iDepartment of Ecology, University of Kaiserslautern, 67663, Kaiserslautern, Germany, and jDepartment of Parasitology, Charles University, Prague, 128 43, Praha 2, Czech -
Adl S.M., Simpson A.G.B., Lane C.E., Lukeš J., Bass D., Bowser S.S
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. MITCHELL,l SHARON E. MOZLEY-STANRIDGE,p LAURA W. PARFREY,q JAN PAWLOWSKI,r SONJA RUECKERT,s LAURA SHADWICK,t CONRAD L. SCHOCH,u ALEXEY SMIRNOVv and FREDERICK W. SPIEGELt aDepartment of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada, and bDepartment of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and cDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA, and dBiology Center and Faculty of Sciences, Institute of Parasitology, University of South Bohemia, Cˇeske´ Budeˇjovice, Czech Republic, and eZoology Department, Natural History Museum, London, SW7 5BD, United Kingdom, and fWadsworth Center, New York State Department of Health, Albany, New York, 12201, USA, and gDepartment of Biochemistry, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and hDepartment of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and iDepartment -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
PROF. SINA ADL (Orcid ID : 0000-0001-6324-6065) PROF. DAVID BASS (Orcid ID : 0000-0002-9883-7823) DR. CÉDRIC BERNEY (Orcid ID : 0000-0001-8689-9907) DR. PACO CÁRDENAS (Orcid ID : 0000-0003-4045-6718) DR. IVAN CEPICKA (Orcid ID : 0000-0002-4322-0754) DR. MICAH DUNTHORN (Orcid ID : 0000-0003-1376-4109) PROF. BENTE EDVARDSEN (Orcid ID : 0000-0002-6806-4807) DR. DENIS H. LYNN (Orcid ID : 0000-0002-1554-7792) DR. EDWARD A.D MITCHELL (Orcid ID : 0000-0003-0358-506X) PROF. JONG SOO PARK (Orcid ID : 0000-0001-6253-5199) DR. GUIFRÉ TORRUELLA (Orcid ID : 0000-0002-6534-4758) Article DR. VASILY V. ZLATOGURSKY (Orcid ID : 0000-0002-2688-3900) Article type : Original Article Corresponding author mail id: [email protected] Adl et al.---Classification of Eukaryotes Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla, David Bassb,c, Christopher E. Laned, Julius Lukeše,f, Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj, Matthew W. Brownk,l, Fabien Burkim, Paco Cárdenasn, Ivan Čepičkao, Ludmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s, Bente Edvardsent, Yana Eglitu, Laure Guillouv, Vladimír Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Sergey Karpovh, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,aa, Daniel J. G. Lahrab, Enrique Laraac,ad, Line Le Gallae, Denis H. Lynnaf,ag, David G. Mannah, Ramon Massana i Moleraq, Edward A. D. Mitchellac,ai , Christine Morrowaj, Jong Soo Parkak, Jan W. Pawlowskial, Martha J. Powellam, Daniel J. Richteran, Sonja Rueckertao, Lora Shadwickap, Satoshi Shimanoaq, Frederick W. Spiegelap, Guifré Torruella i Cortesar, Noha Youssefas, Vasily Zlatogurskyh,at, Qianqian Zhangau,av. -
New Phagotrophic Euglenoid Species (New Genus Decastava; Scytomonas
Available online at www.sciencedirect.com ScienceDirect European Journal of Protistology 56 (2016) 147–170 New phagotrophic euglenoid species (new genus Decastava; Scytomonas saepesedens; Entosiphon oblongum), Hsp90 introns, and putative euglenoid Hsp90 pre-mRNA insertional editing a,∗ a b,† Thomas Cavalier-Smith , Ema E. Chao , Keith Vickerman a Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK b Division of Environmental and Evolutionary Biology, University of Glasgow, Glasgow C12 8QQ, UK Received 22 February 2016; received in revised form 29 July 2016; accepted 3 August 2016 Available online 28 August 2016 Abstract We describe three new phagotrophic euglenoid species by light microscopy and 18S rDNA and Hsp90 sequencing: Scytomonas saepesedens; Decastava edaphica; Entosiphon oblongum. We studied Scytomonas and Decastava ultrastructure. Scytomonas saepesedens feeds when sessile with actively beating cilium, and has five pellicular strips with flush joints and Calycimonas-like microtubule-supported cytopharynx. Decastava, sister to Keelungia forming new clade Decastavida on 18S rDNA trees, has 10 broad strips with cusp-like joints, not bifurcate ridges like Ploeotia and Serpenomonas (phylogenetically and cytologically distinct genera), and Serpenomonas-like feeding apparatus (8–9 unreinforced microtubule pairs loop from dorsal jaw support to cytostome). Hsp90 and 18S rDNA trees group Scytomonas with Petalomonas and show Entosiphon as the earliest euglenoid branch. Basal euglenoids have rigid longitudinal strips; derived clade Spirocuta has spiral often slideable strips. Decastava Hsp90 genes have introns. Decastava/Entosiphon Hsp90 frameshifts imply insertional RNA editing. Petalomonas is too heterogeneous in pellicle structure for one genus; we retain Scytomonas (sometimes lumped with it) and segregate four former Petalomonas as new genus Biundula with pellicle cross section showing 2–8 smooth undulations and typified by Biundula (=Petalomonas) sphagnophila comb. -
Investigations of the Biology of Peranema Trichophorum (Euglenineae) by Y
279 Investigations of the Biology of Peranema trichophorum (Euglenineae) By Y. T. CHEN (University of Pekifig; from the Botany School, Cambridge, England) SUMMARY The feeding apparatus of Peranema trichophorum, consisting of cytostome and rod- organ, is independent of the reservoir system; the latter is the same in structure and function as that of other Euglenineae. There are two flagella, one directed forward, the other backward and adherent to the ventral body surface. The anterior flagellum is longer and thicker than the adherent one. Both flagella are composed of a central core and an outer sheath. Electron micrographs suggest that the core consists of many longitudinal fibrils, and the sheath of many short fibrils radiating from the core, giving the whole flagellum the appearance of a test-tube brush. Treatment with certain protein- dispersing agents cause the unfixed anterior flagellum to dissociate into three fibrils. Peranema multiplies freely on a diet of living yeast-cells; dead yeast is not suitable. Euglena viridis, E. gracilis, and certain other unicellular algae can also serve as food. Egg-yolk, and especially milk, can be used to maintain bacteria-free pure cultures. Casein is suitable in combination with soil-extract or beef-extract, but never as good as milk. With the latter the individuals are larger and more numerous than with yeast as food, although the cultures decline earlier. Clear liquid media of many various kinds did not support growth: particulate food seems to be essential. Peranema is capable of ingesting a great variety of living organisms provided these are motionless. Small organisms are swallowed whole; larger ones are either engulfed or cut open by the rod-organ and their contents sucked out.