A Unified Theory of Early Visual Representa- Tions from Retina to Cortex Through Anatomi- Cally Constrained Deep Cnns
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Visual Physiology
Visual Physiology Perception and Attention Graham Hole Problems confronting the visual system: Retinal image contains a huge amount of information - which must be processed quickly. Retinal image is dim, blurry and distorted. Light levels vary enormously. Solutions: Enhance the important information (edges and contours). Process relative intensities, not absolute light levels. Use two systems, one for bright light and another for twilight (humans). The primary visual pathways: The right visual field is represented in the left hemisphere. The left visual field is represented in the right hemisphere The eye: 50% of light entering the eye is lost by absorption & scattering (diffraction). The rest strikes retinal photoreceptors. Photoreceptors: Rod Outer Segment Cone The retina contains two kinds of photoreceptors, rods and cones. Inner Segment Pedicle Why are two kinds of photoreceptor needed? 2 S Surface Luminance (cd/m ) c o t o White paper in starlight 0.05 p i c White paper in moonlight 0.5 White paper in artificial light 250 P ho t Computer monitor, TV 100 o p i White paper in sunlight 30,000 c Ambient light levels can vary hugely, by a factor of 10,000,000. Pupil diameter can vary retinal illumination by only a factor of 16. Rods respond at low (scotopic) light levels. Cones respond at high (photopic) light levels. Differences between rods and cones: Sensitivity Number Retinal distribution Visual Pigment Number and distribution of receptors: There are about 120 million rods, and 8 million cones. Cones are concentrated in central vision, around the fovea. Rods cover the entire retina, with the exception of the fovea. -
A Linear Systems View to the Concept of Strfs Mounya Elhilali(1)
A linear systems view to the concept of STRFs Mounya Elhilali (1) , Shihab Shamma (2,3) , Jonathan Z Simon (2,3,4) , Jonathan B. Fritz (3) (1) Department of Electrical & Computer Engineering, Johns Hopkins University (2) Department of Electrical & Computer Engineering, University of Maryland, College Park (3)Institute for Systems Research, University of Maryland, College Park (4)Department of Biology, University of Maryland, College Park 1. Introduction A key requirement in the study of sensory nervous systems is the ability to characterize effectively neuronal response selectivity. In the visual system, striving for this objective yielded remarkable progress in understanding the functional organization of the visual cortex and its implications to perception. For instance, the discovery of ordered feature representations of retinal space, color, ocular dominance, orientation, and motion direction in various cortical fields has catalyzed extensive studies into the anatomical bases of this organization, its developmental course, and the changes it undergoes during learning or following injury. In the primary auditory cortex (A1), response selectivity of the neurons (also called their receptive fields ) is ordered topographically according to the frequency they are most tuned to, an organization inherited from the cochlea. Beyond their tuning, however, A1 responses and receptive fields exhibit a bewildering variety of dynamics, frequency bandwidths, response thresholds, and patterns of excitatory and inhibitory regions. All this has been learned over decades of testing with a large variety of acoustic stimuli (tones, clicks, noise, and natural sounds) and response measures (tuning curves, rate-level functions, and binaural maps). A response measure that has proven particularly useful beyond the feature- specific measures enumerated earlier is the notion of a generalized spatiotemporal , or equivalently for the auditory system, the spectro-temporal receptive field (STRF). -
The Neocognitron As a System for Handavritten Character Recognition: Limitations and Improvements
The Neocognitron as a System for HandAvritten Character Recognition: Limitations and Improvements David R. Lovell A thesis submitted for the degree of Doctor of Philosophy Department of Electrical and Computer Engineering University of Queensland March 14, 1994 THEUliW^^ This document was prepared using T^X and WT^^. Figures were prepared using tgif which is copyright © 1992 William Chia-Wei Cheng (william(Dcs .UCLA. edu). Graphs were produced with gnuplot which is copyright © 1991 Thomas Williams and Colin Kelley. T^ is a trademark of the American Mathematical Society. Statement of Originality The work presented in this thesis is, to the best of my knowledge and belief, original, except as acknowledged in the text, and the material has not been subnaitted, either in whole or in part, for a degree at this or any other university. David R. Lovell, March 14, 1994 Abstract This thesis is about the neocognitron, a neural network that was proposed by Fuku- shima in 1979. Inspired by Hubel and Wiesel's serial model of processing in the visual cortex, the neocognitron was initially intended as a self-organizing model of vision, however, we are concerned with the supervised version of the network, put forward by Fukushima in 1983. Through "training with a teacher", Fukushima hoped to obtain a character recognition system that was tolerant of shifts and deformations in input images. Until now though, it has not been clear whether Fukushima's ap- proach has resulted in a network that can rival the performance of other recognition systems. In the first three chapters of this thesis, the biological basis, operational principles and mathematical implementation of the supervised neocognitron are presented in detail. -
Different Roles for Simple-Cell and Complex-Cell Inhibition in V1
The Journal of Neuroscience, November 12, 2003 • 23(32):10201–10213 • 10201 Behavioral/Systems/Cognitive Different Roles for Simple-Cell and Complex-Cell Inhibition in V1 Thomas Z. Lauritzen1,4 and Kenneth D. Miller1,2,3,4 1Graduate Group in Biophysics, 2Departments of Physiology and Otolaryngology, 3Sloan-Swartz Center for Theoretical Neurobiology, and 4W. M. Keck Center for Integrative Neuroscience, University of California, San Francisco, California 94143-0444 Previously, we proposed a model of the circuitry underlying simple-cell responses in cat primary visual cortex (V1) layer 4. We argued that the ordered arrangement of lateral geniculate nucleus inputs to a simple cell must be supplemented by a component of feedforward inhibition that is untuned for orientation and responds to high temporal frequencies to explain the sharp contrast-invariant orientation tuning and low-pass temporal frequency tuning of simple cells. The temporal tuning also requires a significant NMDA component in geniculocortical synapses. Recent experiments have revealed cat V1 layer 4 inhibitory neurons with two distinct types of receptive fields (RFs): complex RFs with mixed ON/OFF responses lacking in orientation tuning, and simple RFs with normal, sharp-orientation tuning (although, some respond to all orientations). We show that complex inhibitory neurons can provide the inhibition needed to explain simple-cell response properties. Given this complex cell inhibition, antiphase or “push-pull” inhibition from tuned simple inhibitory neurons acts to sharpen -
Development of Spatial Coarse-To-Fine Processing in the Visual Pathway
Development of spatial coarse-to-fine processing in the visual pathway Jasmine A. Nirody ∗ July 16, 2013 Abstract The sequential analysis of information in a coarse-to-fine manner is a fundamental mode of processing in the visual pathway. Spatial frequency (SF) tuning, arguably the most fundamental feature of spatial vision, provides particular intuition within the coarse-to-fine framework: low spatial frequencies convey global information about an image (e.g., general orientation), while high spatial frequencies carry more detailed information (e.g., edges). In this paper, we study the development of cortical spatial frequency tuning. As feedforward input from the lateral geniculate nucleus (LGN) has been shown to have significant influence on cortical coarse-to-fine processing, we present a firing-rate based thalamocortical model which includes both feedforward and feedback components. We analyze the relationship between various model parameters (including cortical feedback strength) and responses. We confirm the importance of the antagonistic relationship between the center and surround responses in thalamic relay cell receptive fields (RFs), and further characterize how specific structural LGN RF parameters affect cortical coarse-to-fine processing. Our results also indicate that the effect of cortical feedback on spatial frequency tuning is age-dependent: in particular, cortical feedback more strongly affects coarse-to-fine processing in kittens than in adults. We use our results to propose an experimentally testable hypothesis for the function of the extensive feedback in the corticothalamic circuit. 1 Introduction The mode of information processing in neural sensory systems has been the subject of many experimental and computational studies. It is intuitive that visual information is processed sequentially in a coarse-to-fine manner—when looking quickly at a scene, we process the general features before focusing on individual objects. -
How Simple Cells Are Made in a Nonlinear Network Model of the Visual Cortex
The Journal of Neuroscience, July 15, 2001, 21(14):5203–5211 How Simple Cells Are Made in a Nonlinear Network Model of the Visual Cortex D. J. Wielaard, Michael Shelley, David McLaughlin, and Robert Shapley Center for Neural Science and Courant Institute of Mathematical Sciences, New York University, New York, New York 10012 Simple cells in the striate cortex respond to visual stimuli in an of the dependence of membrane potential on synaptic conduc- approximately linear manner, although the LGN input to the tances, and computer simulations, reveal that the nonlinearity striate cortex, and the cortical network itself, are highly nonlin- of corticocortical inhibition cancels the nonlinear excitatory ear. Although simple cells are vital for visual perception, there input from the LGN. This interaction produces linearized re- has been no satisfactory explanation of how they are produced sponses that agree with both extracellular and intracellular in the cortex. To examine this question, we have developed a measurements. The model correctly accounts for experimental large-scale neuronal network model of layer 4C␣ in V1 of the results about the time course of simple cell responses and also macaque cortex that is based on, and constrained by, realistic generates testable predictions about variation in linearity with cortical anatomy and physiology. This paper has two aims: (1) position in the cortex, and the effect on the linearity of signal to show that neurons in the model respond like simple cells. (2) summation, caused by unbalancing the relative strengths of To identify how the model generates this linearized response in excitation and inhibition pharmacologically or with extrinsic a nonlinear network. -
The Hermann Grid Illusion Revisited
Perception, 2005, volume 34, pages 1375 ^ 1397 DOI:10.1068/p5447 The Hermann grid illusion revisited Peter H Schiller, Christina E Carvey Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; e-mail: [email protected] Received 12 October 2004, in revised form 12 January 2005; published online 23 September 2005 Abstract. The Hermann grid illusion consists of smudges perceived at the intersections of a white grid presented on a black background. In 1960 the effect was first explained by a theory advanced by Baumgartner suggesting the illusory effect is due to differences in the discharge characteristics of retinal ganglion cells when their receptive fields fall along the intersections versus when they fall along non-intersecting regions of the grid. Since then, others have claimed that this theory might not be adequate, suggesting that a model based on cortical mechanisms is necessary [Lingelbach et al, 1985 Perception 14(1) A7; Spillmann, 1994 Perception 23 691 ^ 708; Geier et al, 2004 Perception 33 Supplement, 53; Westheimer, 2004 Vision Research 44 2457 ^ 2465]. We present in this paper the following evidence to show that the retinal ganglion cell theory is untenable: (i) varying the makeup of the grid in a manner that does not materially affect the putative differ- ential responses of the ganglion cells can reduce or eliminate the illusory effect; (ii) varying the grid such as to affect the putative differential responses of the ganglion cells does not eliminate the illusory effect; and (iii) the actual spatial layout of the retinal ganglion cell receptive fields is other than that assumed by the theory. -
David H. Hubel 1926–2013
David H. Hubel 1926–2013 A Biographical Memoir by Robert H. Wurtz ©2014 National Academy of Sciences. Any opinions expressed in this memoir are those of the author and do not necessarily reflect the views of the National Academy of Sciences. DAVID HUNTER HUBEL February 27, 1926–September 22, 2013 Elected to the NAS, 1971 David Hunter Hubel was one of the great neuroscientists of the 20th century. His experiments revolutionized our understanding of the brain mechanisms underlying vision. His 25-year collaboration with Torsten N. Wiesel revealed the beautifully ordered activity of single neurons in the visual cortex, how innate and learned factors shape its development, and how these neurons might be assem- bled to ultimately produce vision. Their work ushered in the current era of analyses of neurons at multiple levels of the cerebral cortex that seek to parse out the functional brain circuits underlying behavior. For these achieve- ments, David H. Hubel and Torsten N. Wiesel, along with Roger W. Sperry, shared the Nobel Prize for Physiology or Medicine in 1981. By Robert H. Wurtz Early life: growing up in Canada David Hubel was born on February 27 1926 in Windsor Ontario. Both of his parents were American citizens, born and raised in Detroit, but because he was born in Canada, he also held Canadian citizenship. His father was a chemical engineer, and his parents moved to Windsor because his father had a job with the Windsor Salt company. His mother, Elsie Hubel, was independent minded, with an interest in electricity and a regret that she had not attended college to study it. -
The Receptive-Field Organization of Simple Cells in Primary Visual Cortex of Ferrets Under Natural Scene Stimulation
4746 • The Journal of Neuroscience, June 1, 2003 • 23(11):4746–4759 The Receptive-Field Organization of Simple Cells in Primary Visual Cortex of Ferrets under Natural Scene Stimulation Darragh Smyth,1 Ben Willmore,2 Gary E. Baker,1 Ian D. Thompson,1 and David J. Tolhurst2 1Laboratory of Physiology, Oxford University, Oxford OX1 3PT, United Kingdom, and 2Department of Physiology, Cambridge University, Cambridge CB2 3EG, United Kingdom The responses of simple cells in primary visual cortex to sinusoidal gratings can primarily be predicted from their spatial receptive fields, as mapped using spots or bars. Although this quasilinearity is well documented, it is not clear whether it holds for complex natural stimuli. We recorded from simple cells in the primary visual cortex of anesthetized ferrets while stimulating with flashed digitized photographs of natural scenes. We applied standard reverse-correlation methods to quantify the average natural stimulus that invokes a neuronal response. Although these maps cannot be the receptive fields, we find that they still predict the preferred orientation of grating for each cell very well (r ϭ 0.91); they do not predict the spatial-frequency tuning. Using a novel application of the linear reconstruction method called regularized pseudoinverse, we were able to recover high-resolution receptive-field maps from the responses to a relatively small number of natural scenes. These receptive-field maps not only predict the optimum orientation of each cell (r ϭ 0.96) but also the spatial-frequency optimum (r ϭ 0.89); the maps also predict the tuning bandwidths of many cells. Therefore, our first conclusion is that the tuning preferences of the cells are primarily linear and constant across stimulus type. -
Learning the Invariance Properties of Complex Cells from Their Responses to Natural Stimuli
European Journal of Neuroscience, Vol. 15, pp. 475±486, 2002 ã Federation of European Neuroscience Societies Learning the invariance properties of complex cells from their responses to natural stimuli Wolfgang EinhaÈuser, Christoph Kayser, Peter KoÈnig and Konrad P. KoÈrding Institute of Neuroinformatics, University of ZuÈrich and ETH ZuÈrich, Winterthurerstr. 190, 8057 ZuÈrich, Switzerland Keywords: development, primary visual cortex, temporal continuity, unsupervised learning Abstract Neurons in primary visual cortex are typically classi®ed as either simple or complex. Whereas simple cells respond strongly to grating and bar stimuli displayed at a certain phase and visual ®eld location, complex cell responses are insensitive to small translations of the stimulus within the receptive ®eld [Hubel & Wiesel (1962) J. Physiol. (Lond.), 160, 106±154; Kjaer et al. (1997) J. Neurophysiol., 78, 3187±3197]. This constancy in the response to variations of the stimuli is commonly called invariance. Hubel and Wiesel's classical model of the primary visual cortex proposes a connectivity scheme which successfully describes simple and complex cell response properties. However, the question as to how this connectivity arises during normal development is left open. Based on their work and inspired by recent physiological ®ndings we suggest a network model capable of learning from natural stimuli and developing receptive ®eld properties which match those of cortical simple and complex cells. Stimuli are drawn from videos obtained by a camera mounted to a cat's head, so they should approximate the natural input to the cat's visual system. The network uses a competitive scheme to learn simple and complex cell response properties. Employing delayed signals to learn connections between simple and complex cells enables the model to utilize temporal properties of the input. -
Spatial Vision: from Spots to Stripes Clickchapter to Edit 3 Spatial Master Vision: Title Style from Spots to Stripes
3 Spatial Vision: From Spots to Stripes ClickChapter to edit 3 Spatial Master Vision: title style From Spots to Stripes • Visual Acuity: Oh Say, Can You See? • Retinal Ganglion Cells and Stripes • The Lateral Geniculate Nucleus • The Striate Cortex • Receptive Fields in Striate Cortex • Columns and Hypercolumns • Selective Adaptation: The Psychologist’s Electrode • The Development of Spatial Vision ClickVisual to Acuity: edit Master Oh Say, title Can style You See? The King said, “I haven’t sent the two Messengers, either. They’re both gone to the town. Just look along the road, and tell me if you can see either of them.” “I see nobody on the road,” said Alice. “I only wish I had such eyes,” the King remarked in a fretful tone. “To be able to see Nobody! And at that distance, too!” Lewis Carroll, Through the Looking Glass Figure 3.1 Cortical visual pathways (Part 1) Figure 3.1 Cortical visual pathways (Part 2) Figure 3.1 Cortical visual pathways (Part 3) ClickVisual to Acuity: edit Master Oh Say, title Can style You See? What is the path of image processing from the eyeball to the brain? • Eye (vertical path) . Photoreceptors . Bipolar cells . Retinal ganglion cells • Lateral geniculate nucleus • Striate cortex ClickVisual to Acuity: edit Master Oh Say, title Can style You See? Acuity: The smallest spatial detail that can be resolved. ClickVisual to Acuity: edit Master Oh Say, title Can style You See? The Snellen E test • Herman Snellen invented this method for designating visual acuity in 1862. • Notice that the strokes on the E form a small grating pattern. -
Primary Visual Cortex (V1, Area 17, Striate Cortex)
Primary Visual Cortex (V1, area 17, striate cortex) 1. Organization of early visual pathway 2. Circuitry of primary visual cortex a. layering, inputs, outputs b. cell types 3. RF properties of V1 neurons a. orientation selectivity b. simple cell and complex cell 4. Circuitry basis of the RFs 5. Retinotopic map 6. Functional architecture of V1 a. orientation columns b. ocular dominance columns c. hypercolumn d. horizontal connections Visual pathway from retina to V1 LGN V1 eye Circuitry -- inputs, outputs and layering 1 2/3 4A 4B 4 4Cα 4Cβ 5 6 M P (LGN) Input LGN → layer 4, layer 6 Layer 4 → layer 2/3 → layer 5 → layer 6 Output Layer 2/3, Layer 4B → other visual cortical areas Layer 5 → superior colliculus Layer 6 → LGN 1 two basic morphological types of cells Pyramidal cell Axons Stellate cell Pyramidal cells • large, pyramid shaped cell bodies • project to other areas, also connect to other local neurons • excitatory Non-pyramidal cells • small and stellate shape (spiny stellate or smooth stellate) • local interneurons • either excitatory (spiny, with many dendritic spines) or inhibitory (smooth, few spines) A top-down view diagram fixation point left visual field right visual field nasal left right nasal half half temporal half temporal half optic chiasm lateral LGN geniculate nucleus (LGN) V1 V1 axons from nasal retina cross → contralateral LGN axons from temporal retina stay → ipsilateral LGN left visual field → right LGN → right V1 right visual field → left LGN → left V1 studying RF properties of V1 neurons receptive field ---- part of the retina (visual field) in which light can evoke response from a cell.