Biodeterioration Risk Threatens the 3100 Year Old Staircase of Hallstatt (Austria): Possible Involvement of Halophilic Microorganisms
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Prokaryotic Biodiversity of Halophilic Microorganisms Isolated from Sehline Sebkha Salt Lake (Tunisia)
Vol. 8(4), pp. 355-367, 22 January, 2014 DOI: 10.5897/AJMR12.1087 ISSN 1996-0808 ©2014 Academic Journals African Journal of Microbiology Research http://www.academicjournals.org/AJMR Full Length Research Paper Prokaryotic biodiversity of halophilic microorganisms isolated from Sehline Sebkha Salt Lake (Tunisia) Abdeljabbar HEDI1,2*, Badiaa ESSGHAIER1, Jean-Luc CAYOL2, Marie-Laure FARDEAU2 and Najla SADFI1 1Laboratoire Microorganismes et Biomolécules Actives, Faculté des Sciences de Tunis, Université de Tunis El Manar 2092, Tunisie. 2Laboratoire de Microbiologie et de Biotechnologie des Environnements Chauds UMR180, IRD, Université de Provence et de la Méditerranée, ESIL case 925, 13288 Marseille cedex 9, France. Accepted 7 February, 2013 North of Tunisia consists of numerous ecosystems including extreme hypersaline environments in which the microbial diversity has been poorly studied. The Sehline Sebkha is an important source of salt for food. Due to its economical importance with regards to its salt value, a microbial survey has been conducted. The purpose of this research was to examine the phenotypic features as well as the physiological and biochemical characteristics of the microbial diversity of this extreme ecosystem, with the aim of screening for metabolites of industrial interest. Four samples were obtained from 4 saline sites for physico-chemical and microbiological analyses. All samples studied were hypersaline (NaCl concentration ranging from 150 to 260 g/L). A specific halophilic microbial community was recovered from each site and initial characterization of isolated microorganisms was performed by using both phenotypic and phylogenetic approaches. The 16S rRNA genes from 77 bacterial strains and two archaeal strains were isolated and phylogenetically analyzed and belonged to two phyla Firmicutes and gamma-proteobacteria of the domain Bacteria. -
Thermolongibacillus Cihan Et Al
Genus Firmicutes/Bacilli/Bacillales/Bacillaceae/ Thermolongibacillus Cihan et al. (2014)VP .......................................................................................................................................................................................... Arzu Coleri Cihan, Department of Biology, Faculty of Science, Ankara University, Ankara, Turkey Kivanc Bilecen and Cumhur Cokmus, Department of Molecular Biology & Genetics, Faculty of Agriculture & Natural Sciences, Konya Food & Agriculture University, Konya, Turkey Ther.mo.lon.gi.ba.cil’lus. Gr. adj. thermos hot; L. adj. Type species: Thermolongibacillus altinsuensis E265T, longus long; L. dim. n. bacillus small rod; N.L. masc. n. DSM 24979T, NCIMB 14850T Cihan et al. (2014)VP. .................................................................................. Thermolongibacillus long thermophilic rod. Thermolongibacillus is a genus in the phylum Fir- Gram-positive, motile rods, occurring singly, in pairs, or micutes,classBacilli, order Bacillales, and the family in long straight or slightly curved chains. Moderate alka- Bacillaceae. There are two species in the genus Thermo- lophile, growing in a pH range of 5.0–11.0; thermophile, longibacillus, T. altinsuensis and T. kozakliensis, isolated growing in a temperature range of 40–70∘C; halophile, from sediment and soil samples in different ther- tolerating up to 5.0% (w/v) NaCl. Catalase-weakly positive, mal hot springs, respectively. Members of this genus chemoorganotroph, grow aerobically, but not under anaer- are thermophilic (40–70∘C), halophilic (0–5.0% obic conditions. Young cells are 0.6–1.1 μm in width and NaCl), alkalophilic (pH 5.0–11.0), endospore form- 3.0–8.0 μm in length; cells in stationary and death phases ing, Gram-positive, aerobic, motile, straight rods. are 0.6–1.2 μm in width and 9.0–35.0 μm in length. -
Isolation and Diversity of Sediment Bacteria in The
bioRxiv preprint doi: https://doi.org/10.1101/638304; this version posted May 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Isolation and Diversity of Sediment Bacteria in the 2 Hypersaline Aiding Lake, China 3 4 Tong-Wei Guan, Yi-Jin Lin, Meng-Ying Ou, Ke-Bao Chen 5 6 7 Institute of Microbiology, Xihua University, Chengdu 610039, P. R. China. 8 9 Author for correspondence: 10 Tong-Wei Guan 11 Tel/Fax: +86 028 87720552 12 E-mail: [email protected] 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 bioRxiv preprint doi: https://doi.org/10.1101/638304; this version posted May 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 29 Abstract A total of 343 bacteria from sediment samples of Aiding Lake, China, were isolated using 30 nine different media with 5% or 15% (w/v) NaCl. The number of species and genera of bacteria recovered 31 from the different media significantly varied, indicating the need to optimize the isolation conditions. 32 The results showed an unexpected level of bacterial diversity, with four phyla (Firmicutes, 33 Actinobacteria, Proteobacteria, and Rhodothermaeota), fourteen orders (Actinopolysporales, 34 Alteromonadales, Bacillales, Balneolales, Chromatiales, Glycomycetales, Jiangellales, Micrococcales, 35 Micromonosporales, Oceanospirillales, Pseudonocardiales, Rhizobiales, Streptomycetales, and 36 Streptosporangiales), including 17 families, 41 genera, and 71 species. -
Reorganising the Order Bacillales Through Phylogenomics
Systematic and Applied Microbiology 42 (2019) 178–189 Contents lists available at ScienceDirect Systematic and Applied Microbiology jou rnal homepage: http://www.elsevier.com/locate/syapm Reorganising the order Bacillales through phylogenomics a,∗ b c Pieter De Maayer , Habibu Aliyu , Don A. Cowan a School of Molecular & Cell Biology, Faculty of Science, University of the Witwatersrand, South Africa b Technical Biology, Institute of Process Engineering in Life Sciences, Karlsruhe Institute of Technology, Germany c Centre for Microbial Ecology and Genomics, University of Pretoria, South Africa a r t i c l e i n f o a b s t r a c t Article history: Bacterial classification at higher taxonomic ranks such as the order and family levels is currently reliant Received 7 August 2018 on phylogenetic analysis of 16S rRNA and the presence of shared phenotypic characteristics. However, Received in revised form these may not be reflective of the true genotypic and phenotypic relationships of taxa. This is evident in 21 September 2018 the order Bacillales, members of which are defined as aerobic, spore-forming and rod-shaped bacteria. Accepted 18 October 2018 However, some taxa are anaerobic, asporogenic and coccoid. 16S rRNA gene phylogeny is also unable to elucidate the taxonomic positions of several families incertae sedis within this order. Whole genome- Keywords: based phylogenetic approaches may provide a more accurate means to resolve higher taxonomic levels. A Bacillales Lactobacillales suite of phylogenomic approaches were applied to re-evaluate the taxonomy of 80 representative taxa of Bacillaceae eight families (and six family incertae sedis taxa) within the order Bacillales. -
Cultivation-Dependant Assessment, Diversity, and Ecology of Haloalkaliphilic Bacteria in Arid Saline Systems of Southern Tunisia
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 648141, 15 pages http://dx.doi.org/10.1155/2013/648141 Research Article Cultivation-Dependant Assessment, Diversity, and Ecology of Haloalkaliphilic Bacteria in Arid Saline Systems of Southern Tunisia Darine El Hidri,1,2 Amel Guesmi,1 Afef Najjari,2 Hanen Cherif,1 Besma Ettoumi,2 Chadlia Hamdi,1 Abdellatif Boudabous,1 and Ameur Cherif1,2 1 Laboratory of Microorganisms and Active Biomolecules, Faculty of Sciences of Tunis, University of Tunis El Manar, 2092 Tunis, Tunisia 2 LR Biotechnology and Bio-Geo Resources Valorization, Higher Institute for Biotechnology, Biotechpole Sidi Thabet, University of Manouba, 2020 Ariana, Tunisia Correspondence should be addressed to Ameur Cherif; [email protected] Received 30 April 2013; Revised 31 August 2013; Accepted 14 September 2013 Academic Editor: George Tsiamis Copyright © 2013 Darine El Hidri et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Haloalkaliphiles are polyextremophiles adapted to grow at high salt concentrations and alkaline pH values. In this work, we isolated 122 haloalkaliphilic bacteria upon enrichments of 23 samples from 5 distinct saline systems of southern Tunisia, growing optimally in media with 10% salt and at pH 10. The collection was classified into 44 groups based on the amplification of the 16S–23S rRNA internal transcribed spacers (ITS-PCR). Phylogenetic analysis and sequencing of the 16S rRNA genes allowed the identification of 13 genera and 20 distinct species. Three gram-positive isolates showing between 95 and 96% of 16S rRNA sequence homology with Bacillus saliphilus could represent new species or genus. -
Ecology of Bacillaceae
Ecology of Bacillaceae INES MANDIC-MULEC,1 POLONCA STEFANIC,1 and JAN DIRK VAN ELSAS2 1University of Ljubljana, Biotechnical Faculty, Department of Food Science and Technology, Vecna pot 111, 1000 Ljubljana, Slovenia; 2Department of Microbial Ecology, Centre for Ecological and Evolutionary Studies, University of Groningen, Linneausborg, Nijenborgh 7, 9747AG Groningen, Netherlands ABSTRACT Members of the family Bacillaceae are among the been found in soil, sediment, and air, as well as in un- most robust bacteria on Earth, which is mainly due to their ability conventional environments such as clean rooms in the to form resistant endospores. This trait is believed to be the Kennedy Space Center, a vaccine-producing company, key factor determining the ecology of these bacteria. and even human blood (1–3). Moreover, members of However, they also perform fundamental roles in soil ecology (i.e., the cycling of organic matter) and in plant health and the Bacillaceae have been detected in freshwater and growth stimulation (e.g., via suppression of plant pathogens and marine ecosystems, in activated sludge, in human and phosphate solubilization). In this review, we describe the high animal systems, and in various foods (including fer- functional and genetic diversity that is found within the mented foods), but recently also in extreme environ- Bacillaceae (a family of low-G+C% Gram-positive spore-forming ments such as hot solid and liquid systems (compost bacteria), their roles in ecology and in applied sciences related and hot springs, respectively), salt lakes, and salterns (4– to agriculture. We then pose questions with respect to their 6). Thus, thermophilic genera of the family Bacillaceae ecological behavior, zooming in on the intricate social behavior that is becoming increasingly well characterized for some dominate the high-temperature stages of composting members of Bacillaceae. -
Research Article Potential for Plant Growth Promotion of Rhizobacteria Associated with Salicornia Growing in Tunisian Hypersaline Soils
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 248078, 13 pages http://dx.doi.org/10.1155/2013/248078 Research Article Potential for Plant Growth Promotion of Rhizobacteria Associated with Salicornia Growing in Tunisian Hypersaline Soils Francesca Mapelli,1 Ramona Marasco,1 Eleonora Rolli,1 Marta Barbato,1 Hanene Cherif,2 Amel Guesmi,2 Imen Ouzari,2 Daniele Daffonchio,1 and Sara Borin1 1 DeFENS,DepartmentofFood,EnvironmentandNutritionalSciences(DeFENS),UniversityofMilan,ViaCeloria2, 20133 Milan, Italy 2 Laboratory of Microorganisms and Active Biomolecules, University of Tunis El Manar, Campus Universitaire, 2092 Tunis, Tunisia Correspondence should be addressed to Sara Borin; [email protected] Received 15 March 2013; Revised 30 April 2013; Accepted 3 May 2013 Academic Editor: George Tsiamis Copyright © 2013 Francesca Mapelli et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Soil salinity and drought are among the environmental stresses that most severely affect plant growth and production around the world. In this study the rhizospheres of Salicornia plants and bulk soils were collected from Sebkhet and Chott hypersaline ecosystems in Tunisia. Depiction of bacterial microbiome composition by Denaturing Gradient Gel Electrophoresis unveiled the occurrence of a high bacterial diversity associated with Salicornia root system. A large collection of 475 halophilic and halotolerant bacteria was established from Salicornia rhizosphere and the surrounding bulk soil, and the bacteria were characterized for the resistance to temperature, osmotic and saline stresses, and plant growth promotion (PGP) features. Twenty Halomonas strains showed resistance to a wide set of abiotic stresses and were able to perform different PGP activities in vitro at 5% NaCl, including ammonia and indole-3-acetic acid production, phosphate solubilisation, and potential nitrogen fixation. -
Halophilic Microorganisms in Deteriorated Historic Buildings: Insights Into Their Characteristics* Justyna Adamiak*, Anna Otlewska, Beata Gutarowska and Anna Pietrzak
Vol. 63, No 2/2016 335–341 http://dx.doi.org/10.18388/abp.2015_1171 Regular paper Halophilic microorganisms in deteriorated historic buildings: insights into their characteristics* Justyna Adamiak*, Anna Otlewska, Beata Gutarowska and Anna Pietrzak Institute of Fermentation Technology and Microbiology, Lodz University of Technology, Łódź, Poland Historic buildings are constantly being exposed to nu- philic microorganisms have developed two mechanisms merous climatic changes such as damp and rainwater. which determine their tolerance to high salinity. On one Water migration into and out of the material’s pores can hand, they can accumulate inorganic ions (usually K+ lead to salt precipitation and the so-called efflorescence. and Cl–) at isotonic concentrations to the surrounding The structure of the material may be seriously threat- environment, but on the other hand, they can use the ened by salt crystallization. A huge pressure is produced so-called compatible solute strategy in osmo-adaptation, when salt hydrates occupy larger spaces, which leads at based on the uptake or synthesis of organic molecules the end to cracking, detachment and material loss. Halo- (e.g. sugars, polyols, amino acids, ectoine) (Madigan & philic microorganisms have the ability to adapt to high Oren, 1999; Xiang et al., 2008; Averhoff & Müller, 2010). salinity because of the mechanisms of inorganic salt They have adapted to grow in many different niches (KCl or NaCl) accumulation in their cells at concentra- (Laiz et al., 2000). Even though saline environment re- tions isotonic to the environment, or compatible solutes fers to water, considerable research has been carried out uptake or synthesis. In this study, we focused our atten- on halophiles inhabiting historic buildings (Rӧlleke et tion on the determination of optimal growth conditions al., 1998; Heyrman et al., 1999; Laiz et al., 2000, 2001; of halophilic microorganisms isolated from historical Piñar et al., 2001, 2014; Ripka et al., 2006; Ettenauer et buildings in terms of salinity, pH and temperature rang- al., 2014). -
Studies on the Biodiversity of Halophilic Microorganisms Isolated from El-Djerid Salt Lake (Tunisia) Under Aerobic Conditions
Hindawi Publishing Corporation International Journal of Microbiology Volume 2009, Article ID 731786, 17 pages doi:10.1155/2009/731786 Research Article Studies on the Biodiversity of Halophilic Microorganisms Isolated from El-Djerid Salt Lake (Tunisia) under Aerobic Conditions Abdeljabbar Hedi,1, 2 Najla Sadfi,1 Marie-Laure Fardeau,2 Hanene Rebib,1 Jean-Luc Cayol,2 Bernard Ollivier,2 and Abdellatif Boudabous1 1 Laboratoire Microorganismes et Biomol´ecules Actives, Facult´e des Sciences de Tunis, Universit´e de Tunis El Manar, 2092 Tunis, Tunisia 2 Laboratoire de Microbiologie et de Biotechnologie des Environnements Chauds, UMR180, IRD, Universit´es de Provence et de la M´editerran´ee, ESIL case 925, 13288 Marseille cedex 9, France Correspondence should be addressed to Jean-Luc Cayol, [email protected] Received 8 April 2009; Accepted 27 August 2009 Recommended by Thomas L. Kieft Bacterial and archaeal aerobic communities were recovered from sediments from the shallow El-Djerid salt lake in Tunisia, and their salinity gradient distribution was established. Six samples for physicochemical and microbiological analyses were obtained from 6 saline sites in the lake for physico-chemical and microbiological analyses. All samples studied were considered hypersaline with NaCl concentration ranging from 150 to 260 g/L. A specific halophilic microbial community was recovered from each site, and characterization of isolated microorganisms was performed via both phenotypic and phylogenetic approaches. Only one extreme halophilic organism, domain Archaea, was isolated from site 4 only, whereas organisms in the domain Bacteria were recovered from the five remaining sampling sites that contained up to 250 g/L NaCl. -
Saline Systems Biomed Central
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Saline Systems BioMed Central Research Open Access Endospores of halophilic bacteria of the family Bacillaceae isolated from non-saline Japanese soil may be transported by Kosa event (Asian dust storm) Akinobu Echigo*1,2, Miki Hino1, Tadamasa Fukushima1,2, Toru Mizuki1,2, Masahiro Kamekura3 and Ron Usami1,2 Address: 1Department of Applied Chemistry, Faculty of Engineering, Toyo University, 2100 Kujirai, Kawagoe, Saitama 350-8585, Japan, 2Bio-Nano Electronics Research Centre, Toyo University, 2100 Kujirai, Kawagoe, Saitama 350-8585, Japan and 3Noda Institute for Scientific Research, 399 Noda, Noda, Chiba 278-0037, Japan Email: Akinobu Echigo* - [email protected]; Miki Hino - [email protected]; Tadamasa Fukushima - [email protected]; Toru Mizuki - [email protected]; Masahiro Kamekura - [email protected]; Ron Usami - [email protected] * Corresponding author Published: 20 October 2005 Received: 11 July 2005 Accepted: 20 October 2005 Saline Systems 2005, 1:8 doi:10.1186/1746-1448-1-8 This article is available from: http://www.salinesystems.org/content/1/1/8 © 2005 Echigo et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Generally, extremophiles have been deemed to survive in the extreme environments to which they had adapted to grow. -
1 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Salimicrobium Salexigens Sp. Nov
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by idUS. Depósito de Investigación Universidad de Sevilla 1 2 Salimicrobium salexigens sp. nov., a moderately halophilic bacterium from salted 3 hides 4 5 Rafael R. de la Habaa, Pinar Yilmaza,b, Cristina Sanchez-Porroa, Meral Birbirb and 6 Antonio Ventosaa,* 7 8 aDepartment of Microbiology and Parasitology, Faculty of Pharmacy, University of 9 Sevilla, 41012 Sevilla, Spain 10 bDivision of Plant Diseases and Microbiology, Department of Biology, Faculty of 11 Science and Letters, Marmara University, 34722 Istanbul, Turkey 12 13 Running title: Salimicrobium salexigens sp. nov. 14 15 *Corresponding author. Tel: +34 954556765; fax: +34 954628162. 16 E-mail address: [email protected] (A. Ventosa). 17 18 19 20 21 Note: Nucleotide sequence data for the 16S rRNA gene are available in the 22 GenBank/EMBL/DDBL databases under the accession numbers: FR714935 (strain 23 29CMIT) and FR714936 (strain 53CMI). 24 25 1 26 Abstract 27 Two Gram-positive, moderately halophilic bacteria, designated strains 29CMIT 28 and 53CMI, were isolated from salted hides. Both strains were non-motile, strictly 29 aerobic cocci, growing in the presence of 3-25 % (w/v) NaCl (optimal growth at 7.5- 30 12.5 % [w/v] NaCl), between pH 5.0 and 10.0 (optimal growth at pH 7.5) and at 31 temperatures between 15 and 40 ºC (optimal growth at 37 ºC). Phylogenetic analysis 32 based on 16S rRNA gene sequence comparison showed that both strains showed a 33 similarity of 98.7 % and were closely related to species of the genus Salimicrobium, 34 within the phylum Firmicutes. -
16S Rrna Gene Sequence Analysis of Halophilic and Halotolerant Bacteria Isolated from a Hypersaline Pond in Sichuan, China
Ann Microbiol (2011) 61:375–381 DOI 10.1007/s13213-010-0137-x SHORT COMMUNICATION 16S rRNA gene sequence analysis of halophilic and halotolerant bacteria isolated from a hypersaline pond in Sichuan, China Jie Tang & Ai-ping Zheng & Eden S. P. Bromfield & Jun Zhu & Shuang-cheng Li & Shi-quan Wang & Qi-ming Deng & Ping Li Received: 12 April 2010 /Accepted: 27 September 2010 /Published online: 22 October 2010 # Springer-Verlag and the University of Milan 2010 Abstract One hundred and twenty bacterial isolates were Keywords Bacteria . Salt tolerance . Hypersaline . obtained from a hypersaline pond (c. 22% salinity) in Sichuan, China . 16S rRNA genes China. Bacteria were isolated from hypersaline water, sediment and soil samples using three culture media and an incubation temperature of 37°C. Of these isolates, 47 were Introduction selected and examined by phylogenetic analysis of 16S rRNA gene sequences and by tests of salt tolerance. The phyloge- Hypersaline environments are defined as those in which salt netic analysis placed the 47 bacterial isolates either in the concentrations exceed that of seawater (Grant 2004). They phylum Firmicutes or in the class Gammaproteobacteria and include artificial and naturally occurring solar salterns in arid showed that they were affiliated with the genera Salimi- areas such as hypersaline lakes and the Dead Sea, crobium, Halalkalibacillus, Virgibacillus, Alkalibacillus, underground brines originating from marine evaporite Marinococcus, Halobacillus, Halomonas, Idiomarina, Chro- deposits, hypersaline soils, and brines in deep ocean zones. mohalobacter and Halovibrio. All tested isolates were either Because water availability is limited by high salt concentra- halophilic or halotolerant and several were capable of growth tion, hypersaline environments are considered to be extreme in the presence of 30% (w/v) NaCl.