A Powerful Framework for the Chemical Design of Molecular Nanomagnets Yan Duan†,1,2, Joana T
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Coordination Chemistry (See Chapter 20, H&S 3Rd Ed.)
Coordination Chemistry (see Chapter 20, H&S 3rd Ed.) Transition metal elements, particularly ions, have a strong tendency to form compounds with Lewis bases. Why? Lewis base: electron pair donor egs. H2O, NH3 n+ Lewis acid: electron pair acceptor egs. M , BH3 ‘low lying’ empty orbitals: lower in energy than HOMO of Lewis case Lewis acidity enhanced by positive charge so TM ions are good Lewis bases 2+ 3+ familiar examples: AlCl3, BF3 from main group and M , M in TM series Type of bonding in these compounds? ‘coordinative’ or ‘dative’ bonds to form Lewis base ‘adducts’ L→M TM-Lewis base ‘adducts’ are often referred to as (i) TM ‘complexes’ OR (ii) coordination complexes NB: still polar covalent bonds – this just defines where the pair of electrons came from Some more definitions: ligand: molecule or ion that can act as a Lewis base to a metal - egs. Cl , PR3, ROR (R = generic term for an alkyl) donor atoms: atoms that are in direct contact with the metal ion O in R2O→M denticity: number of donor atoms per ligand; range from 1 to >6 unidentate bidentate tridentate O H O H2N NH2 2 O O water en diglyme N O O O N N O O N porphin 15-C-5 tetradentate pentadentate chelate: multidentate ligands forms rings; M tend to be very stable, OO especially 5 and 6 member chelate rings acac ‘bite’ or ‘bite angle’: a measure of the span or size of a chelate ligand; depends on M-L distance M OO acac coordination complex MLn generic terms commonly used: L neutral Lewis base (electron pair donor) X anionic donor (eg. -
Naming Coordination Compounds
Naming Coordination Compounds Author: Kit Mao Department of Chemistry, Washington University St. Louis, MO 63130 For information or comments on this tutorial, please contact K. Mao at [email protected]. Please click here for a pdf version of this tutorial. A coordination complex is a substance in which a metal atom or ion accepts electrons from (and thus associates with) a group of neutral molecules or anions called ligands. A complex can be an anion, a cation ion, or a neutral molecule. Coordination compounds are neutral substances (i.e. uncharged) in which at least one ion is present as a complex. You will learn more about coordination compounds in the lab lectures for experiment 5 in this course. The coordination compounds are named in the following way. (At the end of this tutorial, there are additional examples that demonstrate how coordination compounds are named.) A. When naming coordination compounds, always name the cation before the anion. This rule holds regardless of whether the complex ion is the cation or the anion. (This is just like naming an ionic compound.) B. In naming the complex ion: 1. Name the ligands first, in alphabetical order, and then name the metal atom or ion. Note: The metal atom or ion is written before the ligands in the chemical formula. 2. The names of some common ligands are listed in Table 1. · Anionic ligands end in “-o.” For anions that end in “-ide”(e.g. chloride, hydroxide), “-ate” (e.g. sulfate, nitrate), and “-ite” (e.g. nirite), change the endings as follows: -ide ® -o; e.g., chloride ® chloro and hydroxide ® hydroxo -ate ® -ato; e.g., sulfate ® sulfato and nitrate ® nitrato -ite ® -ito; e.g., nitrite ® nitrito · For neutral ligands, the common name of the molecule is used (e.g. -
624 — 632 [1974] ; Received January 9, 1974)
Some ab Initio Calculations on Indole, Isoindole, Benzofuran, and Isobenzofuran J. Koller and A. Ažman Chemical Institute “Boris Kidric” and Department of Chemistry, University of Ljubljana, P.O.B. 537, 61001 Ljubljana, Slovenia, Yugoslavia N. Trinajstić Institute “Rugjer Boskovic”, Zagreb, Croatia, Yugoslavia (Z. Naturforsch. 29 a. 624 — 632 [1974] ; received January 9, 1974) Ab initio calculations in the framework of the methodology of Pople et al. have been performed on indole, isoindole, benzofuran. and isobenzofuran. Several molecular properties (dipole moments, n. m. r. chemical shifts, stabilities, and reactivities) correlate well with calculated indices (charge densities, HOMO-LUMO separation). The calculations failed to give magnitudes of first ionization potentials, although the correct trends are reproduced, i. e. giving higher values to more stable iso mers. Some of the obtained results (charge densities, dipole moments) parallel CNDO/2 values. Introduction as positional isomers 4 because they formally differ Indole (1), benzofuran (3) and their isoconju only in the position of a heteroatom. Their atomic gated isomers: isoindole (2) and isobenzofuran (4) skeletal structures and a numbering of atoms are are interesting heteroaromatic molecules1-3 denoted given in Figure 1. 13 1 HtKr^nL J J L / t hü H 15 U (3) U) Fig. 1. Atomic skeletal structures and numbering of atoms for indole (1), isoindole (2), benzofuran (3), and isobenzofuran (4). Reprint requests to Prof. Dr. N. Trinajstic, Rudjer Boskovic Institute, P.O.B. 1016, 41001 Zagreb I Croatia, Yugoslavia. Dieses Werk wurde im Jahr 2013 vom Verlag Zeitschrift für Naturforschung This work has been digitalized and published in 2013 by Verlag Zeitschrift in Zusammenarbeit mit der Max-Planck-Gesellschaft zur Förderung der für Naturforschung in cooperation with the Max Planck Society for the Wissenschaften e.V. -
Bridging Ligands
Chapter 9 Coordination Chemistry I: Structure and Isomers 9-1 History 9-2 Nomenclature 9-3 Isomerism 9-4 Coordination Numbers and Structure History What is coordination compound? Coordniantion compounds include compound composed of a metal atom or ion and one or more ligands that formally donate electrons to the metal. More specifically, a transition metal surrounded by neutral molecules or anions with a definite geometry. What is ligand? Ligand can be a atom, ion, and molecules. History Prussian blue (German: Preußischblau or Berliner Blau, in English Berlin blue) is a dark blueWhatpigment is coordinationused in paints and compound? formerly in blueprints. Prussian blue wasCoordination discovered complexesby accident were by pai knownnter Heinrich - although Diesbach not understood in Berlin in 1704-5,in which any sense is why - it since is also the known beginning as Berlin of chemistry, blue. (Diesbach e.g. Prussian was attempting to createblue a paint, Aureolin with ,aand red copperhue.) It vitriolhas several. different chemical names, these being iron(III) ferrocyanide, ferric ferrocyanide, iron(III) hexacyanoferrate(II), and ferricThe hexacyanoferrate. key breakthrough Commonly occurred when and c Alfredonveniently Werner it isproposed, simply called "PB. inter alia, that Co(III) bears six ligands in an octahedral geometry. Aureolin (sometimes called Cobalt Yellow) is a pigment used in oil and watercolor painting. Its color index name is PY40 (40th entry on list of yellow pigments). It was first made in 1851 and its chemical composition is potassium cobaltinitrite. Copper(II) sulfate ("sulphate" in most Commonwealth nations) is the chemical compound with the formula CuSO4. This salt exists as a series of compounds that differ in their degree of hydration. -
Complexation
FACULTY OF PHARMACEUTICAL SCIENCES, RAMAUNIVERSITY, KANPUR B.PHARM 3rd SEM PHYSICAL PHARMACEUTICS-I BP302T MR. PEEYUSH Assistant professor Rama university, kanpur Complexation Overview Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes Methods of Analysis Method of Continuous Variation PH Titration Distribution Method Solubility Method Spectroscopy Learning Objectives 1. Define the three classes of complexes with pharmaceutically relevant examples. 2. Describe chelates, their physically properties, and what differentiates them from organic molecular complexes. 3. Describe the types of forces that hold together organic molecular complexes with examples. 4. Describe the forces in polymer–drug complexes used for drug delivery. 5. Discuss the pharmaceutical applications of cyclodextrins. 6. Describe the methods of analysis of complexes and determine their stoichiometric ratios and stability constants. Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes INTRODUCTION Complexes are compounds that result from donor–acceptor mechanisms between two or more chemical species. Complexes can be divided broadly into three classes depending the type of the acceptor substance: 1. Metal ion complexes 2. Organic molecular complexes 3. Inclusion complexes Intermolecular forces involved in the formation of complexes: 1. Van der Waals forces. 2. Hydrogen bonds (important in molecular complexes). 3. Coordinate covalence (important in metal complexes). 4. Charge transfer. 5. Hydrophobic interaction. Introduction Types of Complexes Metal Ion Complexes A. Inorganic type B. Chelates C. Olefin type D. Aromatic type II. Organic Molecular Complexes A. Quinhydrone type B. Picric acid type C. Caffeine and other drug complexes D. Polymer type III. Inclusion Compounds A. Channel lattice type B. Layer type C. Clathrates D. Monomolecular type E. -
Lovely Professional University, Punjab, India
Synthesis and Characterization of Isoindolinone derivatives as potential CNS active agents Project Report-1 Masters of Sciences In Chemistry (Hons.) By Kritika Chopra Registration No. 11615943 Under the guidance Of Dr. Gurpinder Singh Department of Chemistry Lovely Professional University, Punjab, India DECLARATION I hereby affirm that the dissertation entitled “Synthesis and Characterization of Isoindolinone derivatives as potential CNS active agents” submitted for the award of Master of Science in Chemistry and submitted to the Lovely Professional University is the original and authentic study that I have carried out from August 2017 to November 2017 under the supervision of Dr. Gurpinder Singh. It does not contain any unauthorized works of other scholars, those referred are properly cited. Name and Signature of the Student Kritika Chopra Reg. No.: 11615943 Certificate This is to certify that the pre-dissertation project entitled “Synthesis and Characterization of Isoindolinone derivatives as potential CNS active agents” submitted by Kritika Chopra to the Lovely Professional University, Punjab, India is a documentation of genuine literature review of coming research work approved under my guidance and is commendable of consideration for the honour of the degree of Master of Science in Chemistry of the University. Supervisor Dr. Gurpinder Singh Assistant Professor Acknowledgement This project report is the result of half of year of work whereby I have been accompanied and supported by many people. It is a pleasant aspect for me to express my gratitude for them all. I would like to thank my supervisor Dr. Gurpinder Singh, Department of Chemistry, Lovely Professional University. Madam guided me when ever, where ever it was needed. -
Thioxopyrimidinecarbonitriles As Precursors for Linked and Fused
Available online a t www.scholarsresearchlibrary.com Scholars Research Library Archives of Applied Science Research, 2014, 6 (2):122-135 (http://scholarsresearchlibrary.com/archive.html) ISSN 0975-508X CODEN (USA) AASRC9 Thioxopyrimidinecarbonitriles as precursors for linked and fused pyrimidine derivatives: synthesis of imidazo-, pyrazoloimidazo-, triazoloimidazopyrimidines and pyrimidoimidazotriazepines aAbdelmoneim A. Makhlouf, bRasha A. M. Faty* and aAsmaa K. Mourad aFayoum University, Faculty of Science, Fayoum, Egypt bChemistry Department, Faculty of Science, Cairo University, Giza, Egypt _____________________________________________________________________________________________ ABSTRACT Alkylation of 6-aryl-4-oxo-2-thioxopyrimidine-5-carbonitriles ( 1a-c) afforded the key intermediates 2a-e, which underwent further alkylation at N-3 nitrogen atom, upon treatment with α-halofunctionalized compounds, namely: ethyl bromoacetate, chloroacetone, chloroacetylacetone, chloroacetonirile, or monobromomalononitrile to perform 2-alkylthio-6-aryl-5-cyano-4-oxo-3-substituted-3,4-dihydropyrimidines 7-9. Heating 7-9 with hydrazine hydrate produced imidazo[1,2-a]pyrimidine derivatives 10-15. Treatment of 10a with each of ethyl cyanoacetate, ethyl acetoacetate, or acetylacetone gave pyrazoloimidazopyrimidine derivatives 18a,b, 19 , respectively. Compound 10a reacted with carbon disulphide to give oxazoloimidazopyrimidine 20 . Reaction of the imidazopyrimidine derivative 15a with glacial acetic acid or thiourea afforded triazoloimidazopyrimidines 21,22 . Also, compound 15a underwent cycloaddition reaction upon treatment with either of phthalic anhydride or acrylonitrile to give 2-phenyl-4,12- dioxopyrimidino[2``,1``:2`,3`]imidazo[1`,5`:2,3][1,2,4]triazolo[1,5-b]isoindole-3-carbonitrile ( 23 ) or 8-amino-2- phenyl-4-oxo-7H-pyrimido[2`,1`:2,3]imidazo[1,5-b][1,2,4]triazepine-3-carbonitrile (24 ), respectively. -
Coordination Chemistry
P r i m e r Coordination Chemistry Bonds in introductory chemistry are typically classified Ligands can be monodentate or multidentate. according to whether they are ionic or covalent in Monodentate ligands like ammonia would coordinate to character. Coordinate covalent bonds are a third the metal via one coordination point while a mulitdentate classification. In this type of bond, a lone pair of electrons ligand would coordinate to the metal via two or more from one chemical species is donated to an empty orbital points. Ethylene diamine (NH2CH2CH2NH2) is an example on another chemical species to form the new bond. This of a bidentate ligand because it coordinates to the metal is different from a covalent bond because both electrons through each of the two amine groups (-NH2). come from one atom or molecule but are shared as in a typical covalent bond. Unlike an ionic bond, a coordinate The number of coordination points in a complex is covalent bond does not rely on formal electrostatic referred to as the coordination number. Coordination attraction between a cation and an anion to form. numbers of six and four are the most common and result Ammonia-borane complexes are an example of this type in geometries that are octahedral (6), tetrahedral (4), or of bonding (Figure 1). square planar (4) (Figure 3). Figure 1: Ammonia-borane complexes contain a Figure 3: Common geometries of coordination complexes coordinate covalent bond where the lone pair of with coordination numbers of 6 and 4. electrons on ammonia (NH ) are donated to an empty p 3 Coordination numbers and geometries vary dramatically, orbital on borane (BH ) to give NH BH . -
Heterocyclic Compounds
Lecture note- 3 Organic Chemistry CHE 502 HETEROCYCLIC COMPOUNDS Co-Coordinator – Dr. Shalini Singh DEPARTMENT OF CHEMISTRY UTTARAKHAND OPEN UNIVERSITY UNIT 4: HETEROCYCLIC COMPOUNDS- I CONTENTS 4.1 Objectives 4.2 Introduction 4.3 Classification of heterocyclic compounds 4.4 Nomenclature of heterocyclic compounds 4.5 Molecular orbital picture 4.6 Structure and aromaticity of pyrrole, furan, thiophene and pyridine 4.7 Methods of synthesis properties and chemical reactions of Pyrrole, Furan, Thiophene and Pyridine 4.8 Comparison of basicity of Pyridine, Piperidine and Pyrrole 4.9 Summary 4.10 Terminal Question 4.1 OBJECTIVES In this unit learner will be able to • Know about the most important simple heterocyclic ring systems containing heteroatom and their systems of nomenclature and numbering. • Understand and discuss the reactivity and stability of hetero aromatic compounds. • Study the important synthetic routes and reactivity for five and six member hetero aromatic compounds. • Understand the important physical and chemical properties of five and six member hetero aromatic compounds. • Know about the applications of these hetero aromatic compounds in the synthesis of important industrial and pharmaceutical compounds 4.2 INTRODUCTION Heterocyclic compound is the class of cyclic organic compounds those having at least one hetero atom (i.e. atom other than carbon) in the cyclic ring system. The most common heteroatoms are nitrogen (N), oxygen (O) and sulphur (S). Heterocyclic compounds are frequently abundant in plants and animal products; and they are one of the important constituent of almost one half of the natural organic compounds known. Alkaloids, natural dyes, drugs, proteins, enzymes etc. are the some important class of natural heterocyclic compounds. -
Essentials of Heterocyclic Chemistry-I Heterocyclic Chemistry
Baran, Richter Essentials of Heterocyclic Chemistry-I Heterocyclic Chemistry 5 4 Deprotonation of N–H, Deprotonation of C–H, Deprotonation of Conjugate Acid 3 4 3 4 5 4 3 5 6 6 3 3 4 6 2 2 N 4 4 3 4 3 4 3 3 5 5 2 3 5 4 N HN 5 2 N N 7 2 7 N N 5 2 5 2 7 2 2 1 1 N NH H H 8 1 8 N 6 4 N 5 1 2 6 3 4 N 1 6 3 1 8 N 2-Pyrazoline Pyrazolidine H N 9 1 1 5 N 1 Quinazoline N 7 7 H Cinnoline 1 Pyrrolidine H 2 5 2 5 4 5 4 4 Isoindole 3H-Indole 6 Pyrazole N 3 4 Pyrimidine N pK : 11.3,44 Carbazole N 1 6 6 3 N 3 5 1 a N N 3 5 H 4 7 H pKa: 19.8, 35.9 N N pKa: 1.3 pKa: 19.9 8 3 Pyrrole 1 5 7 2 7 N 2 3 4 3 4 3 4 7 Indole 2 N 6 2 6 2 N N pK : 23.0, 39.5 2 8 1 8 1 N N a 6 pKa: 21.0, 38.1 1 1 2 5 2 5 2 5 6 N N 1 4 Pteridine 4 4 7 Phthalazine 1,2,4-Triazine 1,3,5-Triazine N 1 N 1 N 1 5 3 H N H H 3 5 pK : <0 pK : <0 3 5 Indoline H a a 3-Pyrroline 2H-Pyrrole 2-Pyrroline Indolizine 4 5 4 4 pKa: 4.9 2 6 N N 4 5 6 3 N 6 N 3 5 6 3 N 5 2 N 1 3 7 2 1 4 4 3 4 3 4 3 4 3 3 N 4 4 2 6 5 5 5 Pyrazine 7 2 6 Pyridazine 2 3 5 3 5 N 2 8 N 1 2 2 1 8 N 2 5 O 2 5 pKa: 0.6 H 1 1 N10 9 7 H pKa: 2.3 O 6 6 2 6 2 6 6 S Piperazine 1 O 1 O S 1 1 Quinoxaline 1H-Indazole 7 7 1 1 O1 7 Phenazine Furan Thiophene Benzofuran Isobenzofuran 2H-Pyran 4H-Pyran Benzo[b]thiophene Effects of Substitution on Pyridine Basicity: pKa: 35.6 pKa: 33.0 pKa: 33.2 pKa: 32.4 t 4 Me Bu NH2 NHAc OMe SMe Cl Ph vinyl CN NO2 CH(OH)2 4 8 5 4 9 1 3 2-position 6.0 5.8 6.9 4.1 3.3 3.6 0.7 4.5 4.8 –0.3 –2.6 3.8 6 3 3 5 7 4 8 2 3 5 2 3-position 5.7 5.9 6.1 4.5 4.9 4.4 2.8 4.8 4.8 1.4 0.6 3.8 4 2 6 7 7 3 N2 N 1 4-position -
Coordination Complexes
Coordination Complexes Chapter 20 What we learn from Chap 20 • We begin the chapter with what is among the most important coordination complexes of all, iron in hemoglobin (magnesium in chlorophyll might be another). In Section 20.1, we introduce the coordinate covalent bond and reintroduce Lewis acids (central atom) and bases (ligands) as the bonding species in coordination complexes. We also discuss how carbon monoxide can replace oxygen in hemoglobin. Copyright © Houghton Mifflin Company. All rights reserved. 20 | 2 Copyright © Houghton Mifflin Company. All rights reserved. 20 | 3 CHAPTER OUTLINE I. Bonding in Coordination Complexes II. Ligands III. Coordination Number IV. Structure V. Isomers VI. Formulas and Names A. Formulas B. Nomenclature VII. Color and Coordination Compounds A. Transition Metals and Color B. Crystal-Field Theory C. Orbital Occupancy D. The Result of d Orbital Splitting E. Magnetism VIII. Chemical Reactions A. Ligand Exchange Reactions B. Electron Transfer Reactions Copyright © Houghton Mifflin Company. All rights reserved. 20 | 4 20.1 Coordination Complex • Central metal atom – transition metal. • Coordinate covalent bond • Ligand – anion or neutral compound ·· such as H2O: or :NH3. 2+ [Cu(NH3)] 3- [Fe(CN)6] Copyright © Houghton Mifflin Company. All rights reserved. 20 | 5 Complexes Protein Ferrodoxin Plastocyanin Wilkin’s catalysyst Copyright © Houghton Mifflin Company. All rights reserved. 20 | 6 20.2 Ligands • Lewis bases having a lone pair of e- to donate. • Bidentate ligands form two bonds to the metal. • Chelates are polydentate ligands. Copyright © Houghton Mifflin Company. All rights reserved. 20 | 7 Ligand Names Copyright © Houghton Mifflin Company. All rights reserved. 20 | 8 Ligands Copyright © Houghton Mifflin Company. -
IUPAC Nomenclature of Fused and Bridged Fused Ring Systems
Pure &App/. Chern., Vol. 70, No. 1, pp. 143-216, 1998. Printed in Great Britain. Q 1998 IUPAC INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY ORGANIC CHEMISTRY DIVISION COMMISSION ON NOMENCLATURE OF ORGANIC CHEMISTRY (111.1) NOMENCLATURE OF FUSED AND BRIDGED FUSED RING SYSTEMS (IUPAC Recommendations 1998) Prepared for publication by G. P. MOSS Department of Chemistry, Queen Mary and Westfield College, Mile End Road, London, El 4NS, UK Membership of the Working Party (1982-1997): A. T. Balaban (Romania), A. J. Boulton (UK), P. M. Giles, Jr. (USA), E. W. Godly (UK), H. Gutmann (Switzerland), A. K. Ikizler (Turkey), M. V. Kisakiirek (Switzerland), S. P. Klesney (USA), N. Lozac’h (France), A. D. McNaught (UK), G. P. Moss (UK), J. Nyitrai (Hungary), W. H. Powell (USA), Ch. Schmitz (France), 0. Weissbach (Federal Republic of Germany) Membership of the Commission on Nomenclature of Organic Chemistry during the preparation of this document was as follows: Titular Members: 0. Achmatowicz (Poland) 1979-1987; J. Blackwood (USA) 1996; H. J. T. Bos (Netherlands) 1987-1995, Vice-chairman, 1991- ; J. R. Bull (Republic of South Africa) 1987-1993; F. Cozzi (Italy) 1996- ; H. A. Favre (Canada) 1989-, Chairman, 1991- ; P. M. Giles, Jr. (USA) 1989-1995; E. W. Godly (UK) 1987-1993, Secretary, 1989-1993; D. Hellwinkel (Federal Republic of Germany) 1979-1987, Vice-Chainnan, 1981-1987; B. J. Herold (Portugal) 1994- ; K. Hirayama (Japan) 1975-1983; M. V. Kisakiirek (Switzerland) 1994, Vice-chairman, 1996- ; A. D. McNaught (UK) 1979-1987; G. P. Moss (UK) 1977-1987, Chairman, 1981-1987, Vice-chairman, 1979-1981; R.