Coincident Two Mutations and One Single Nucleotide Polymorphism of the PTCH1 Gene in a Family with Naevoid Basal Cell Carcinoma Syndrome
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Hedgehog Signaling Is Evolutionarily Conserved Cilium-Independent
Downloaded from genesdev.cshlp.org on August 14, 2009 - Published by Cold Spring Harbor Laboratory Press Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved Miao-Hsueh Chen, Christopher W. Wilson, Ya-Jun Li, et al. Genes Dev. 2009 23: 1910-1928 Access the most recent version at doi:10.1101/gad.1794109 Supplemental http://genesdev.cshlp.org/content/suppl/2009/07/23/23.16.1910.DC1.html Material References This article cites 97 articles, 47 of which can be accessed free at: http://genesdev.cshlp.org/content/23/16/1910.full.html#ref-list-1 Email alerting Receive free email alerts when new articles cite this article - sign up in the box at the service top right corner of the article or click here To subscribe to Genes & Development go to: http://genesdev.cshlp.org/subscriptions Copyright © 2009 by Cold Spring Harbor Laboratory Press Downloaded from genesdev.cshlp.org on August 14, 2009 - Published by Cold Spring Harbor Laboratory Press Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved Miao-Hsueh Chen,1,3 Christopher W. Wilson,1,3 Ya-Jun Li,1 Kelvin King Lo Law,2 Chi-Sheng Lu,1 Rhodora Gacayan,1 Xiaoyun Zhang,2 Chi-chung Hui,2 and Pao-Tien Chuang1,4 1Cardiovascular Research Institute, University of California at San Francisco, San Francisco, California 94158, USA; 2Program in Developmental and Stem Cell Biology, The Hospital for Sick Children, and Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5G 1L7, Canada A central question in Hedgehog (Hh) signaling is how evolutionarily conserved components of the pathway might use the primary cilium in mammals but not fly. -
Genetic Mutations Underlying Phenotypic Plasticity in Basosquamous Carcinoma Audris Chiang1,2,7, Caroline Z
See related commentary on pg 2258 ORIGINAL ARTICLE Genetic Mutations Underlying Phenotypic Plasticity in Basosquamous Carcinoma Audris Chiang1,2,7, Caroline Z. Tan1,7, Franc¸ois Kuonen1, Luqman M. Hodgkinson1, Felicia Chiang3, Raymond J. Cho4, Andrew P. South5,JeanY.Tang1, Anne Lynn S. Chang1, Kerri E. Rieger1,6, Anthony E. Oro1 and Kavita Y. Sarin1 Basosquamous carcinoma (BSC) is an aggressive skin neoplasm with the features of both basal cell carcinoma (BCC) and squamous cell carcinoma (SCC). While genetic drivers of BCC and SCC development have been extensively characterized, BSC has not been well studied, and it remains unclear whether these tumors orig- inally derive from BCC or SCC. In addition, it is unknown which molecular pathways mediate the reprog- ramming of tumor keratinocytes toward basaloid or squamatized phenotypes. We sought to characterize the genomic alterations underlying sporadic BSC to elucidate the derivation of these mixed tumors. We identifed frequent Hedgehog (Hh) pathway mutations in BSCs, implicating Hh deregulation as the primary driving event in BSC. Principal component analysis of BCC and SCC driver genes further demonstrate the genetic similarity between BCC and BSC. In addition, 45% of the BSCs harbor recurrent mutations in the SWI/SNF complex gene, ARID1A, and evolutionary analysis revealed that ARID1A mutations occur after PTCH1 but before SCC driver mutations, indicating that ARID1A mutations may bestow plasticity enabling squamatization. Finally, we demonstrate mitogen-activated protein kinase pathway activation and the loss of Hh signaling associated with the squamatization of BSCs. Overall, these results support the genetic derivation of BSCs from BCCs and highlight potential factors involved in modulating tumor reprogramming between basaloid and squamatized phenotypes. -
Recent Advances in Signaling Pathways Comprehension As Carcinogenesis Triggers in Basal Cell Carcinoma
Journal of Clinical Medicine Review Recent Advances in Signaling Pathways Comprehension as Carcinogenesis Triggers in Basal Cell Carcinoma Mircea Tampa 1,2, Simona Roxana Georgescu 1,2,*, Cristina Iulia Mitran 3, Madalina Irina Mitran 3, Clara Matei 1, Cristian Scheau 4 , Carolina Constantin 5,6 and Monica Neagu 5,6,7 1 Department of Dermatology, “Carol Davila” University of Medicine and Pharmacy, 050474 Bucharest, Romania; [email protected] (M.T.); [email protected] (C.M.) 2 Department of Dermatology, “Victor Babes” Clinical Hospital for Infectious Diseases, 030303 Bucharest, Romania 3 Department of Microbiology, “Carol Davila” University of Medicine and Pharmacy, 050474 Bucharest, Romania; [email protected] (C.I.M.); [email protected] (M.I.M.) 4 Department of Physiology, “Carol Davila” University of Medicine and Pharmacy, 050474 Bucharest, Romania; [email protected] 5 Immunology Department, “Victor Babes” National Institute of Pathology, 050096 Bucharest, Romania; [email protected] (C.C.); [email protected] (M.N.) 6 Colentina Clinical Hospital, 020125 Bucharest, Romania 7 Faculty of Biology, University of Bucharest, 76201 Bucharest, Romania * Correspondence: [email protected] Received: 18 July 2020; Accepted: 16 September 2020; Published: 18 September 2020 Abstract: Basal cell carcinoma (BCC) is the most common malignant skin tumor. BCC displays a different behavior compared with other neoplasms, has a slow evolution, and metastasizes very rarely, but sometimes it causes an important local destruction. Chronic ultraviolet exposure along with genetic factors are the most important risk factors involved in BCC development. Mutations in the PTCH1 gene are associated with Gorlin syndrome, an autosomal dominant disorder characterized by the occurrence of multiple BCCs, but are also the most frequent mutations observed in sporadic BCCs. -
Loss of the PTCH1 Tumor Suppressor Defines a New
Banerjee et al. J Transl Med (2019) 17:246 https://doi.org/10.1186/s12967-019-1995-z Journal of Translational Medicine RESEARCH Open Access Loss of the PTCH1 tumor suppressor defnes a new subset of plexiform fbromyxoma Sudeep Banerjee1,2, Christopher L. Corless3, Markku M. Miettinen4, Sangkyu Noh1, Rowan Ustoy1, Jessica L. Davis3, Chih‑Min Tang1, Mayra Yebra1, Adam M. Burgoyne5 and Jason K. Sicklick1* Abstract Background: Plexiform fbromyxoma (PF) is a rare gastric tumor often confused with gastrointestinal stromal tumor. These so‑called “benign” tumors often present with upper GI bleeding and gastric outlet obstruction. It was recently demonstrated that approximately one‑third of PF have activation of the GLI1 oncogene, a transcription factor in the hedgehog (Hh) pathway, via a MALAT1‑GLI1 fusion protein or GLI1 up‑regulation. Despite this discovery, the biology of most PFs remains unknown. Methods: Next generation sequencing (NGS) was performed on formalin‑fxed parafn‑embedded (FFPE) samples of PF specimens collected from three institutions (UCSD, NCI and OHSU). Fresh frozen tissue from one tumor was utilized for in vitro assays, including quantitative RT‑PCR and cell viability assays following drug treatment. Results: Eight patients with PF were identifed and 5 patients’ tumors were analyzed by NGS. An index case had a mono‑allelic PTCH1 deletion of exons 15–24 and a second case, identifed in a validation cohort, also had a PTCH1 gene loss associated with a suspected long‑range chromosome 9 deletion. Building on the role of Hh signaling in PF, PTCH1, a tumor suppressor protein, functions upstream of GLI1. Loss of PTCH1 induces GLI1 activation and down‑ stream gene transcription. -
Understanding the Application: NGS Panel Testing for Hereditary Cancer Syndromes and Cancer Targeted Therapy
Understanding the Application: NGS Panel Testing for Hereditary Cancer Syndromes and Cancer Targeted Therapy Felicitas L. Lacbawan, MD, FCAP, FACMG Medical Director, Genetics Quest Diagnostics Nichols Institute, San Juan Capistrano, CA USA February 9, 2016 [email protected] http://www.cancer.org/acs/groups/content/@editorial/documents/document/acspc-044552.pdf 2 http://www.nature.com/onc/journal/v23/n38/full/1207714a.html Hereditary Cancers About 5% to 10% of all cancers Inheriting a gene mutation or pathogenic variant does not necessarily mean that a person will develop cancer, but it increases his/her risk Most common hereditary cancers are: Breast cancer Ovarian cancer Colorectal cancer Prostate cancer Understanding if cancer is due to an inherited pathogenic variant/mutation can help clarify future risks of developing cancer and help determine options for cancer screening and prevention, possibly therapy 5 Lifetime Cancer Risks for Common Cancers Cancer Risk (%) Cancer Type http://seer.cancer.gov/ Lifetime Risks: Breast Cancer “Red Flags” for Inherited Susceptibility to Cancer Cancer in 2 or more closely related relatives Multiple generations affected Early age at diagnosis Multiple primary tumors Bilateral or rare cancers Constellation of tumors consistent with a specific cancer syndrome Certain ethnic backgrounds (e.g. Ashkenazi Jewish ancestry) 8 Assessing Patient’s Family History Ovarian, 52 Breast, 42 Breast, 45 9 Cost per Genome Decreasing Dramatically Diagnostic Applications of Sequencing -
Bio 102 Practice Problems Genetic Code and Mutation
Bio 102 Practice Problems Genetic Code and Mutation Multiple choice: Unless otherwise directed, circle the one best answer: 1. Choose the one best answer: Beadle and Tatum mutagenized Neurospora to find strains that required arginine to live. Based on the classification of their mutants, they concluded that: A. one gene corresponds to one protein. B. DNA is the genetic material. C. "inborn errors of metabolism" were responsible for many diseases. D. DNA replication is semi-conservative. E. protein cannot be the genetic material. 2. Choose the one best answer. Which one of the following is NOT part of the definition of a gene? A. A physical unit of heredity B. Encodes a protein C. Segement of a chromosome D. Responsible for an inherited characteristic E. May be linked to other genes 3. A mutation converts an AGA codon to a TGA codon (in DNA). This mutation is a: A. Termination mutation B. Missense mutation C. Frameshift mutation D. Nonsense mutation E. Non-coding mutation 4. Beadle and Tatum performed a series of complex experiments that led to the idea that one gene encodes one enzyme. Which one of the following statements does not describe their experiments? A. They deduced the metabolic pathway for the synthesis of an amino acid. B. Many different auxotrophic mutants of Neurospora were isolated. C. Cells unable to make arginine cannot survive on minimal media. D. Some mutant cells could survive on minimal media if they were provided with citrulline or ornithine. E. Homogentisic acid accumulates and is excreted in the urine of diseased individuals. 5. -
Antibiotic Resistance by High-Level Intrinsic Suppression of a Frameshift Mutation in an Essential Gene
Antibiotic resistance by high-level intrinsic suppression of a frameshift mutation in an essential gene Douglas L. Husebya, Gerrit Brandisa, Lisa Praski Alzrigata, and Diarmaid Hughesa,1 aDepartment of Medical Biochemistry and Microbiology, Biomedical Center, Uppsala University, Uppsala SE-751 23, Sweden Edited by Sankar Adhya, National Institutes of Health, National Cancer Institute, Bethesda, MD, and approved January 4, 2020 (received for review November 5, 2019) A fundamental feature of life is that ribosomes read the genetic (unlikely if the DNA sequence analysis was done properly), that the code in messenger RNA (mRNA) as triplets of nucleotides in a mutants carry frameshift suppressor mutations (15–17), or that the single reading frame. Mutations that shift the reading frame gen- mRNA contains sequence elements that promote a high level of ri- erally cause gene inactivation and in essential genes cause loss of bosomal shifting into the correct reading frame to support cell viability viability. Here we report and characterize a +1-nt frameshift mutation, (10). Interest in understanding these mutations goes beyond Mtb and centrally located in rpoB, an essential gene encoding the beta-subunit concerns more generally the potential for rescue of mutants that ac- of RNA polymerase. Mutant Escherichia coli carrying this mutation are quire a frameshift mutation in any essential gene. We addressed this viable and highly resistant to rifampicin. Genetic and proteomic exper- by isolating a mutant of Escherichia coli carrying a frameshift mutation iments reveal a very high rate (5%) of spontaneous frameshift suppres- in rpoB and experimentally dissecting its genotype and phenotypes. sion occurring on a heptanucleotide sequence downstream of the mutation. -
Why Are Frameshift Homologs Widespread Within and Across Species?
bioRxiv preprint doi: https://doi.org/10.1101/067736; this version posted August 25, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. The shiftability of the protein coding genes 1 Why are frameshift homologs widespread within and across species? 2 Xiaolong Wang*1, Quanjiang Dong2, Gang Chen1, Jianye Zhang1, Yongqiang Liu1, Jinqiao 3 Zhao1, Haibo Peng1, Yalei Wang1, Yujia Cai1, Xuxiang Wang1, Chao Yang1 4 1. College of Life Sciences, Ocean University of China, Qingdao, 266003, P. R. China 5 2. Qingdao Municipal Hospital, Qingdao, Shandong, 266003, P. R. China 6 Abstract 7 Frameshifted coding genes presumably yield truncated and dysfunctional proteins. 8 We report that frameshift homologs, including frameshift orthologs and frameshift 9 paralogs, are actually widespread within and across species. We proposed that protein 10 coding genes have a ca-0.5 quasi-constant shiftability: given any protein coding 11 sequence, at least 50% of the amino acids remain conserved in a frameshifted protein 12 sequence. In the natural genetic code, amino acid pairs assigned to frameshift codon 13 substitutions are more conserved than those to random codon substitutions, and the 14 frameshift tolerating ability of the natural genetic code ranks among the best 6% of all 15 compatible genetic codes. Hence, the shiftability of protein coding genes was mainly 16 predefined by the standard genetic code, while additional sequence-level shiftability 17 was achieved through biased usages of codons and codon pairs. We concluded that 18 during early evolution the genetic code was symmetrically optimized for tolerate 19 frameshifts, so that protein coding genes were endowed an inherent ability to tolerate 20 frameshifting in both forward and backward directions. -
Point Mutations Underlying NF1 and NF2 and Increased Risk of Malignancy
Central Annals of Otolaryngology and Rhinology Mini Review *Corresponding author Andrea L.O. Hebb, MSc, PhD, RN, Maritime Lateral Skull Base Clinic, Otolaryngology, Neurosurgery and the Point Mutations Underlying NF1 Stereotactic Radiotherapy Group QEII Health Science Centre, Halifax, Canada; Email: [email protected] and NF2 and Increased Risk of Submitted: 12 February 2020 Accepted: 25 February 2020 Published: 27 February 2020 Malignancy ISSN: 2379-948X Copyright 1 2 3,4 3,4 Myles Davidson , Haupt TS , Morris DP , Shoman NM , © 2020 Davidson M, et al. 2,4 1,2,4 Walling SA , and Hebb ALO * OPEN ACCESS 1Department of Psychology, Saint Mary’s University, Canada 2Division of Neurosurgery, Dalhousie University, Canada Keywords 3 Division of Otolaryngology, Dalhousie University, Canada • Neurofibromatosis 4 Maritime Lateral Skull Base Clinic, Otolaryngology, Neurosurgery and the Stereotactic • Missense mutation Radiotherapy Group QEII Health Science Centre, Canada • Frameshift mutation • Nonsense mutation Abstract • KRAS gene • Colorectal cancer Neurofibromatosis Type-1 and Neurofibromatosis Type-2 are autosomal dominant • Acoustic neuroma tumor suppressor disorders that result from inherited or spontaneous mutations in • Vestibular schwannoma their respective genes. Neurofibromatosis Type-1 has been attributed to a non-sense • Meningioma mutation in chromosome 17 and Neurofibromatosis Type-2 a point mutation in its gene on chromosome 22. The following discussion briefly reviews point and frameshift mutations and explores the relationship between point mutations and development of malignancies in patients with Neurofibromatosis Type-1 and Neurofibromatosis Type-2. INTRODUCTION producing phenylalanine hydroxylase, the majority of which are missense mutations [4]. A point mutation is the change of one base for another in the DNA sequence. -
Challenges in Reporting Pathogenic/Potentially
www.nature.com/scientificreports OPEN Challenges in reporting pathogenic/ potentially pathogenic variants in 94 cancer predisposing genes - in pediatric patients screened with NGS panels Adela Chirita-Emandi 1,2,6*, Nicoleta Andreescu1,2,6, Cristian G. Zimbru1,3, Paul Tutac1,2, Smaranda Arghirescu4,5, Margit Serban5 & Maria Puiu1,2 The beneft of reporting unsolicited fndings in Next Generation Sequencing (NGS) related to cancer genes in children may have implications for family members, nevertheless, could also cause distress. We aimed to retrospectively investigate germline variants in 94 genes implicated in oncogenesis, in patients referred to NGS testing for various rare genetic diseases and reevaluate the utility of reporting diferent classes of pathogenicity. We used in silico prediction software to classify variants and conducted manual review to examine unsolicited fndings frequencies in 145 children with rare diseases, that underwent sequencing - using a 4813 gene panel. The anonymized reanalysis revealed 18250 variants, of which 126 were considered after fltering. Six pathogenic variants (in BRCA1,BMPR1A,FANCA,FANCC,NBN genes) with cancer related phenotype and three unsolicited variants (in BRCA2,PALB2,RAD50 genes) were reported to patients. Additionally, three unsolicited variants in ATR, BLM (in two individuals), and FANCB genes presented potential cancer susceptibility, were not reported to patients. In retrospect, 4.8% (7/145) of individuals in our cohort had unsolicited NGS fndings related to cancer. More eforts are needed to create an updatable consensus in reporting variants in cancer predisposing genes, especially for children. Consent process is crucial to inform of both value and risk of additional genetic information. Next-Generation Sequencing (NGS) for large panels of genes or exomes are increasingly and successfully used in medical management for rare diseases and cancer. -
Review of the Molecular Genetics of Basal Cell Carcinoma; Inherited Susceptibility, Somatic Mutations, and Targeted Therapeutics
cancers Review Review of the Molecular Genetics of Basal Cell Carcinoma; Inherited Susceptibility, Somatic Mutations, and Targeted Therapeutics James M. Kilgour , Justin L. Jia and Kavita Y. Sarin * Department of Dermatology, Stanford University School of Medcine, Stanford, CA 94305, USA; [email protected] (J.M.K.); [email protected] (J.L.J.) * Correspondence: [email protected] Simple Summary: Basal cell carcinoma is the most common human cancer worldwide. The molec- ular basis of BCC involves an interplay of inherited genetic susceptibility and somatic mutations, commonly induced by exposure to UV radiation. In this review, we outline the currently known germline and somatic mutations implicated in the pathogenesis of BCC with particular attention paid toward affected molecular pathways. We also discuss polymorphisms and associated phenotypic traits in addition to active areas of BCC research. We finally provide a brief overview of existing non-surgical treatments and emerging targeted therapeutics for BCC such as Hedgehog pathway inhibitors, immune modulators, and histone deacetylase inhibitors. Abstract: Basal cell carcinoma (BCC) is a significant public health concern, with more than 3 million cases occurring each year in the United States, and with an increasing incidence. The molecular basis of BCC is complex, involving an interplay of inherited genetic susceptibility, including single Citation: Kilgour, J.M.; Jia, J.L.; Sarin, nucleotide polymorphisms and genetic syndromes, and sporadic somatic mutations, often induced K.Y. Review of the Molecular Genetics of Basal Cell Carcinoma; by carcinogenic exposure to UV radiation. This review outlines the currently known germline and Inherited Susceptibility, Somatic somatic mutations implicated in the pathogenesis of BCC, including the key molecular pathways Mutations, and Targeted affected by these mutations, which drive oncogenesis. -
The Cell Adhesion Molecule CHL1 Interacts with Patched-1 to Regulate
© 2017. Published by The Company of Biologists Ltd | Journal of Cell Science (2017) 130, 2606-2619 doi:10.1242/jcs.194563 RESEARCH ARTICLE The cell adhesion molecule CHL1 interacts with patched-1 to regulate apoptosis during postnatal cerebellar development Jelena Katic1, Gabriele Loers1, Jelena Tosic1, Melitta Schachner2,3,4,* and Ralf Kleene1 ABSTRACT differentiated neural cells (Holm et al., 1996; Chen et al., 1999; The immunoglobulin superfamily adhesion molecule close homolog of Hillenbrand et al., 1999; Buhusi et al., 2003; Jakovcevski et al., L1 (CHL1) plays important roles during nervous system development. 2007, 2009; Katic et al., 2014). Moreover, CHL1 regulates Here, we identified the hedgehog receptor patched-1 (PTCH1) as a neuritogenesis through different mechanisms (Chen et al., 1999; novel CHL1-binding protein and showed that CHL1 interacts with Hillenbrand et al., 1999; Jakovcevski et al., 2007, 2009; Katic et al., the first extracellular loop of PTCH1 via its extracellular domain. 2014). In search for novel binding partners for CHL1, we found that trans Colocalization and co-immunoprecipitation of CHL1 with PTCH1 PTCH1 and CHL1 associate in a heterophilic -interaction. The suggest an association of CHL1 with this major component of the 12-pass transmembrane protein PTCH1 is a cognate receptor for the hedgehog signaling pathway. The trans-interaction of CHL1 with PTCH1 three mammalian hedgehog family members sonic hedgehog promotes neuronal survival in cultures of dissociated cerebellar granule (SHH), desert hedgehog (DHH) and indian hedgehog (IHH), cells and of organotypic cerebellar slices. An inhibitor of the PTCH1- which act as morphogens and function as signaling molecules by regulated hedgehog signal transducer, smoothened (SMO), and binding to PTCH1 (for reviews and references therein, see Jenkins, inhibitors of RhoA and Rho-associated kinase (ROCK) 1 and 2 2009; Robbins et al., 2012; Briscoe and Thérond, 2013).