Mice – Biology and Husbandry
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Biology Assessment Plan Spring 2019
Biological Sciences Department 1 Biology Assessment Plan Spring 2019 Task: Revise the Biology Program Assessment plans with the goal of developing a sustainable continuous improvement plan. In order to revise the program assessment plan, we have been asked by the university assessment committee to revise our Students Learning Outcomes (SLOs) and Program Learning Outcomes (PLOs). Proposed revisions Approach: A large community of biology educators have converged on a set of core biological concepts with five core concepts that all biology majors should master by graduation, namely 1) evolution; 2) structure and function; 3) information flow, exchange, and storage; 4) pathways and transformations of energy and matter; and (5) systems (Vision and Change, AAAS, 2011). Aligning our student learning and program goals with Vision and Change (V&C) provides many advantages. For example, the V&C community has recently published a programmatic assessment to measure student understanding of vision and change core concepts across general biology programs (Couch et al. 2019). They have also carefully outlined student learning conceptual elements (see Appendix A). Using the proposed assessment will allow us to compare our student learning profiles to those of similar institutions across the country. Revised Student Learning Objectives SLO 1. Students will demonstrate an understanding of core concepts spanning scales from molecules to ecosystems, by analyzing biological scenarios and data from scientific studies. Students will correctly identify and explain the core biological concepts involved relative to: biological evolution, structure and function, information flow, exchange, and storage, the pathways and transformations of energy and matter, and biological systems. More detailed statements of the conceptual elements students need to master are presented in appendix A. -
Mouse Models of Human Cancer
INVITATION ORGANIZERS The German-Israeli Cooperation in Cancer Research was Scientific Program Committee founded in 1976 and is the longest lasting scientific coop- Ministry of Science, DKFZ: Prof. Dr. Hellmut Augustin Technology and Space eration between Germany and Israel. To date 159 projects Israel: Prof. Dr. Eli Pikarsky, Prof. Dr. Varda Rotter have been funded. Beyond this, the cooperation has led to friendships between scientists of both countries and other partners (www.dkfz.de/israel). German-Israeli Cooperation in Cancer Research In 2013, the 6th German-Israeli Cancer Research School will DKFZ: Prof. Dr. Peter Angel take place in the Negev Desert in Israel. The focus will be on Israel: Dr. Ahmi Ben-Yehudah, Nurit Topaz mouse models of human cancer. Prominent Israeli and Ger- man scientists will present their latest advances in cancer Administrative Coordinator research. Dr. Barbara Böck Advanced preclinical tumor models have emerged as a criti- Scientific Coordinator of the Helmholtz Alliance cal bottleneck for both, the advancement of basic tumor Preclinical Comprehensive Cancer Center (PCCC) biology and for translational research. Aimed at overcom- ing this bottleneck, the speakers will highlight recent de- velopments in the field of mouse cancer models that better Contact Address MOST mimic the pathogenesis, the course and the response to Nurit Topaz therapy of human tumors. Ministry of Science, Technology and Space The format of the school will include lectures in the morn- P.O.Box 49100 ing and the late afternoon, framed by social activities. Dur- Jerusalem 91490, Israel ing the poster sessions, the participants are expected to phone: +972 2 5411157, fax: +972 2 5825725 give short presentations, highlighting their research proj- e-mail: [email protected] ects. -
DOMESTIC RATS and MICE Rodents Expose Humans to Dangerous
DOMESTIC RATS AND MICE Rodents expose humans to dangerous pathogens that have public health significance. Rodents can infect humans directly with diseases such as hantavirus, ratbite fever, lymphocytic choriomeningitis and leptospirosis. They may also serve as reservoirs for diseases transmitted by ectoparasites, such as plague, murine typhus and Lyme disease. This chapter deals primarily with domestic, or commensal, rats and mice. Domestic rats and mice are three members of the rodent family Muridae, the Old World rats and mice, which were introduced into North America in the 18th century. They are the Norway rat (Rattus norvegicus), the roof rat (Rattus rattus) and the house mouse (Mus musculus). Norway rats occur sporadically in some of the larger cities in New Mexico, as well as some agricultural areas. Mountain ranges as well as sparsely populated semidesert serve as barriers to continuous infestation. The roof rat is generally found only in the southern Rio Grande Valley, although one specimen was collected in Santa Fe. The house mouse is widespread in New Mexico, occurring in houses, barns and outbuildings in both urban and rural areas. I. IMPORTANCE Commensal rodents are hosts to a variety of pathogens that can infect humans, the most important of which is plague. Worldwide, most human plague cases result from bites of the rat flea, Xenopsylla cheopis, during epizootics among Rattus spp. In New Mexico, the commensal rodent species have never been found infected with plague; here, the disease is prevalent among wild rodents (especially ground squirrels) and their fleas. Commensal rodents consume and contaminate foodstuffs and animal feed. -
United States Patent (19) 11 Patent Number: 5,348,854 Webster, Jr
US00534.8854A United States Patent (19) 11 Patent Number: 5,348,854 Webster, Jr. 45) Date of Patent: Sep. 20, 1994 54 METHOD FORDETECTINGPROKARYOTIC vol. 10, No. 2, "Overview of Automation and Identifi ORGANISMS cation,” pp. 18-20, William J. Martin (1979). 76 Inventor: John A. Webster, Jr., 5 Kenmar Dr., American Society for Microbiology News, vol. 49, No. 2, Bldg. 5, Apt. 21, Billerica, Mass. "Impact of Modern Taxonomy on Microbiology,” Don 01821 J. Brenner. International Code of Nomenclature of Bacteria and 21) Appl. No.: 21,551 Selected Statutes... Bacteriological Code, 1976 Revi 22 Filed: Mar. 2, 1987 sions; ASM, Washington, D.C. (1975). Arnot et al., Mol. Biochem. Parasitol. 3:47-56 (1981). Related U.S. Application Data Dunn et al., Cell 12:23-36 (1977). Mattei et al., Chem. Absts, vol. 86, No. 19, p. 267, Ab 63) Continuation of Ser. No. 695,223, Jan. 25, 1985, aban doned, Continuation-in-part of Ser. No. 305,498, Sep. stract No. 1362(e) (1977). 25, 1981, Pat. No. 4,717,653. Moseley, S. L. et al., J. Infect. Dis. 142:892-898 (1980). Acore, R. U., Current Topics in Microbiology and Im 51 Int. Cl. ............................................... C12Q 1/68 munobiology 64:105-128 (1974), edited by Springer, 52 U.S. C. .......................................... 435/6; 435/34; New York. 435/172.1; 435/810; 436/504; 436/545; 436/501; 436/804 Boros et al., Nucl. Acids Res, 6:1817-1830 (1979). 58) Field of Search .................. 435/6, 34, 172.1, 810; Saillard, Colette, J. N. Bove, "Methods in Mycro 436/504, 543, 545, 801, 501; 535/695, 223, 78, plasma,’ vol. -
Mice Are Here to Stay
Mice A re Here to Stay Wherever people live, there are mice. It would be difficult to find another animal that has adapted to the habitats created by humans as well as the house mouse has. It thus seemed obvious to Diethard Tautz at the Max Planck Institute for Evolutionary Biology in Plön that the species would make an ideal model system for investigating how evolution works. BIOLOGY & MEDICINE_Evolution Mice A re Here to Stay TEXT CORNELIA STOLZE he mice at the Max Planck mice themselves only within a range of can be a key factor in the emergence of Institute in Plön live in their 30 to 50 centimeters, they convey high- new species. For Tautz, the house very own house: they have ly complex messages. mouse is a model for the processes of 16 rooms where they can Diethard Tautz and his colleagues evolution: it would be difficult to find form their family clans and have discovered that house mice be- another animal species that lends itself T territories as they see fit. The experi- have naturally only when they live in so well to the study of the genetic ments Tautz and his colleagues carry a familiar environment and interact mechanisms of evolution. out to study such facets as the rodents’ with other members of their species. “Not only is this species extremely communication, behavior and partner- When animals living in the wild are adaptable, as demonstrated by its dis- ships sometimes take months. During captured, they lose their familiar envi- persal all over the globe, but we also this time, the mice are largely left to ronment: everything smells and tastes know its genome better than that of al- their own devices. -
Controlling House Mice Stephen M
® ® University of Nebraska–Lincoln Extension, Institute of Agriculture and Natural Resources Know how. Know now. G1105 (Revised March 2012) Controlling House Mice Stephen M. Vantassel, Project Coordinator—Wildlife Damage; Scott E. Hygnstrom, Extension Wildlife Damage Specialist; and Dennis M. Ferraro, Extension Educator are surprised to learn that house mice can be responsible for so This publication discusses ways to recognize and much noise. A musky odor can occur in areas with long-term control damage caused by house mice. presence by house mice. Finally, mice may be seen during their nocturnal travels, or less frequently, during daylight hours. House mice (Mus musculus) House Mouse Facts are highly adapted House mice are small rodents with relatively large ears and to human environ- small black eyes. They weigh about ½-1 ounce and usually are ments and can thrive light gray in color. An adult is about 5½- to 7½-inches long, under a variety of including the 3- to 4-inch tail. conditions (Figure Although house mice prefer cereal grains, they will eat 1). They are found in almost anything. An adult consumes only 1/10-ounce of food and around homes, per day by nibbling bits of food during its travels. Mice also farms, and urban cache food as supply permits. Mice maintain contact with walls lots, as well as open Figure 1. House mouse. Photo by Robert Timm. with their whiskers and guard hairs to guide them during their fields and agricultural lands. House mice are uncommon in nocturnal travels. Mice are capable of exponential population undisturbed areas away from farms or towns. -
2Jrb Lichtarge Lab 2006
Pages 1–5 2jrb Evolutionary trace report by report maker December 2, 2009 4.3.3 DSSP 4 4.3.4 HSSP 4 4.3.5 LaTex 4 4.3.6 Muscle 4 4.3.7 Pymol 4 4.4 Note about ET Viewer 4 4.5 Citing this work 4 4.6 About report maker 4 4.7 Attachments 5 1 INTRODUCTION From the original Protein Data Bank entry (PDB id 2jrb): Title: C-terminal domain of orf1p from mouse line-1 Compound: Mol id: 1; molecule: orf 1 protein; chain: a; fragment: residues 261-347; engineered: yes Organism, scientific name: Mus Musculus; CONTENTS 2jrb contains a single unique chain 2jrbA (65 residues long). This is an NMR-determined structure – in this report the first model in the 1 Introduction 1 file was used. 2 Chain 2jrbA 1 2.1 Q91V68 overview 1 2.2 Multiple sequence alignment for 2jrbA 1 2.3 Residue ranking in 2jrbA 1 2.4 Top ranking residues in 2jrbA and their position on 2 CHAIN 2JRBA the structure 1 2.1 Q91V68 overview 2.4.1 Clustering of residues at 25% coverage. 1 From SwissProt, id Q91V68, 100% identical to 2jrbA: 2.4.2 Possible novel functional surfaces at 25% Description: PORF1. coverage. 2 Organism, scientific name: Mus musculus domesticus (western 3 Notes on using trace results 3 European house mouse). 3.1 Coverage 3 Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Verte- 3.2 Known substitutions 3 brata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; 3.3 Surface 3 Rodentia; Sciurognathi; Muridae; Murinae; Mus. 3.4 Number of contacts 3 3.5 Annotation 3 3.6 Mutation suggestions 3 2.2 Multiple sequence alignment for 2jrbA 4 Appendix 3 For the chain 2jrbA, the alignment 2jrbA.msf (attached) with 45 4.1 File formats 3 sequences was used. -
Guidelines for the Euthanasia of Mouse and Rat Rodent Fetuses and Neonates
Guidelines for Euthanasia of Rodent Fetuses and Neonates The following guidelines and general references are suggested to assist NIH intramural Animal Care and Use Committees in reviewing proposals which involve the use of rodent fetuses or neonates.1-22 In all cases, the person performing the euthanasia must be fully trained in the appropriate procedures. The AVMA Guidelines for the Euthanasia of Animals: 2013 Edition states that “Scientific data indicate that mammalian embryos and fetuses are in a state of unconsciousness throughout pregnancy and birth.” It also states that “The precocious young of guinea pigs remain insentient and unconscious until 75% to 80% of the way through pregnancy and remain unconscious until after birth due to chemical inhibitors” and “embryos and fetuses cannot consciously experience feelings such as breathlessness or pain. Therefore, they also cannot suffer while dying in utero after the death of the dam, whatever the cause.” 2 There is also literature which indicates that there is the likelihood that pain may be perceived relative to the neural development in mouse, rat and hamster fetuses over 15 days, and in guinea pig fetuses over 35 days and that behavioral responses to sensory stimulation do occur. 18-22 1. Fetuses - Mouse, Rat, Hamster, and Guinea Pig Fetuses to Birth: When fetuses (mouse, rat & hamster > E15, or guinea pigs > E35) are required for study, euthanasia of individual fetuses may be induced by acceptable physical methods of euthanasia, such as decapitation with surgical scissors or cervical dislocation. Although physical methods are considered the most effective and humane because of the speed, intraplacental injection of pentobarbital may be justified for procedures which require preservation of anatomical and histological mouse fetal structures or avoid hypoxia associated with physical methods. -
FIELD MOUSE (Apodemus Sylvaticus)
HOUSE MOUSE (Mus Musculus) FIELD MOUSE (Apodemus Sylvaticus) OCCURRENCE British homes, offices, shops and public nutty brown on its upper parts and creamy buildings are regularly host to the two white on the underparts. common species of mice; the long tailed field mouse which enters buildings usually LIFE CYCLE to escape autumnal farming practices and the ensuing winter weather, and the house Mice become sexually mature at 2 months of mouse which as its name suggests is very age. Mice breed throughout the year but the keen to establish in our own built availability of food always limits the timing and environment. number of litters. The average litter size is 6 but litters of 8 - 9 are not uncommon. Mice APPEARANCE are born pink skinned, blind and wholly dependant on their mothers. The house mouse is between 75mm and 100mm (3-4") long with a trailing tail of FEEDING HABITS similar length. The fur is usually a grey/brown top coat with light grey Mice are sporadic feeders eating small underparts, the ears are large and both the quantities from many sources usually at night. hind and fore feet are small. The eyes, They generally prefer cold foodstuffs but they which are bright and self coloured black, will consume many kinds of foods of animal detect movement only, not detail or and vegetable origin. A healthy mouse needs colour. to consume about 10% of its own body weight daily to maintain good breeding conditions. An adult mouse of both species may weigh up to 30g (1oz). The field mouse differs Mice have a very limited feeding range from the house mouse in colour being a sometimes of only a few square metres and have the ability to sustain themselves on the moisture derived from their food, often contaminate food, and have the potential to taking little or no water directly. -
Is There a Mouse in the House? Eliminate Mice with IPM
PA IPM FACT SHEET SERIES Is There a Mouse in the House? Eliminate Mice with IPM Step 2: Prevention Keep Them Out • Look at the walls, ceilings, floors, and around pipes and wires on the inside of the house for holes and other points of en- try. These openings may have a dirty or oily marking around them. A mouse can fit through a hole about the size of a dime (or a pencil), and a rat can fit through a hole about the size of BIGSTOCKPHOTO.COM a quarter. • Look outside the house to determine how they may have got- ten in, especially around pipes and wires, and at the founda- What Is IPM? tion of the house. Integrated pest management (IPM) uses information about the • If possible, seal off/plug outdoor holes with rodent-proof ma- pest in order to choose methods of control that are safest and terials (copper mesh, hardware cloth, and silicone sealant). most effective. IPM methods include pest prevention, exclusion, and nonchemical tools first. If chemical pesticides are needed, • Install door sweeps under doors. Many mice come in the same products are chosen that pose the least risk to human health. way you do—through the doorway! With IPM, you start by asking, “Why is this pest here?” and try to remove the conditions allowing the pest to enter and live. Eliminate Their Needs. All pests look for food, water, and This approach solves pest problems rather than just treating the shelter. It is very important to remove access to these items to symptoms. -
Gene Regulation and the Genomic Basis of Speciation and Adaptation in House Mice (Mus Musculus)
Gene regulation and the genomic basis of speciation and adaptation in house mice (Mus musculus) By Katya L. Mack A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Professor Michael W. Nachman, Chair Professor Rasmus Nielsen Professor Craig T. Miller Fall 2018 Abstract Gene regulation and the genomic basis of speciation and adaptation in house mice (Mus musculus) by Katya Mack Doctor of Philosophy in Integrative Biology University of California, Berkeley Professor Michael W. Nachman, Chair Gene expression is a molecular phenotype that is essential to organismal form and fitness. However, how gene regulation evolves over evolutionary time and contributes to phenotypic differences within and between species is still not well understood. In my dissertation, I examined the role of gene regulation in adaptation and speciation in house mice (Mus musculus). In chapter 1, I reviewed theoretical models and empirical data on the role of gene regulation in the origin of new species. I discuss how regulatory divergence between species can result in hybrid dysfunction and point to areas that could benefit from future research. In chapter 2, I characterized regulatory divergence between M. m. domesticus and M. m. musculus associated with male hybrid sterility. The major model for the evolution of post-zygotic isolation proposes that hybrid sterility or inviability will evolve as a product of deleterious interactions (i.e., negative epistasis) between alleles at different loci when joined together in hybrids. As the regulation of gene expression is inherently based on interactions between loci, disruption of gene regulation in hybrids may be a common mechanism for post-zygotic isolation. -
Common Mammals of White Sands
National Park Service White Sands Department of the Interior White Sands National Monument Common Mammals of White Sands NPS historic photo of a coyote catching a mouse hile visiting White Sands National Monument, it is very unlikely that Wyou will see any of our resident mammals. They have adapted to the hot summers of the Tularosa Basin by hiding in their dens until it cools down, leaving behind only their footprints from their nightly hunting. Pallid bats can be found roosting in their food on the ground while many areas, such as the visitor center. walking around. Their large ears They are identified by their large ears help them to hear their prey’s and light-colored fur. These winged footsteps. They eat insects like mammals can eat insects in the air scorpions and crickets, but also like other bats, but locate most of lizards and rodents. Pallid Bat Antozous pallidus The Apache pocket mouse is an helps it blend with the sand. It is endemic subspecies to White Sands a favorite snack of the kit fox. The and is one of the few residents of the Apache pocket mouse extracts dunes. It is named for the large fur all of its water from the food it lined pockets in their cheeks that hold digests. It can go its entire life hundreds of seeds when the mouse without ever drinking water. forages. It is light in coloration, which Apache Pocket Mouse Perognathus flavescens Apachii The kangaroo rat has a few tricks monument, the kangaroo rat is 13 to help escape predators.