1 1 Original Article 2 After continents divide: comparative phylogeography of reef fishes from the Red 3 Sea and Indian Ocean 4 Joseph D. DiBattista1*, Michael L. Berumen2,3, Michelle R. Gaither4, Luiz A. 5 Rocha4, Jeff A. Eble5, J. Howard Choat6, Matthew T. Craig7, Derek J. Skillings1 6 and Brian W. Bowen1 7 1Hawai‘i Institute of Marine Biology, Kāne‘ohe, HI 96744, USA, 2Red Sea 8 Research Center, King Abdullah University of Science and Technology, Thuwal, 9 Saudi Arabia, 3 Biology Department, Woods Hole Oceanographic Institution, 10 Woods Hole, MA 02543 USA, 4Section of Ichthyology, California Academy of 11 Sciences, San Francisco, CA 94118, USA, 5Department of Biology, University of 12 West Florida, Pensacola, FL 32514, USA, 6School of Marine and Tropical 13 Biology, James Cook University, Townsville, QLD 4811, Australia, 7Department 14 of Marine Sciences and Environmental Studies, University of San Diego, San 15 Diego, CA 92110, USA 16 17 *Correspondence: Joseph D. DiBattista, Hawai‘i Institute of Marine Biology, P.O. 18 Box 1346, Kāne‘ohe, HI 96744, USA. 19 E-mail:
[email protected] 2 20 Running header: Phylogeography of Red Sea reef fishes 21 22 23 24 25 26 27 28 29 30 31 32 ABSTRACT 33 Aim The Red Sea is a biodiversity hotspot characterized by unique marine fauna 34 and high endemism. This sea began forming approximately 24 million years ago 35 with the separation of the African and Arabian plates, and has been characterized 36 by periods of desiccation, hypersalinity and intermittent connection to the Indian 3 37 Ocean. We aim to evaluate the impact of these events on the genetic architecture 38 of the Red Sea reef fish fauna.