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Pakaraimaea Dipterocarpacea
The Ectomycorrhizal Fungal Community in a Neotropical Forest Dominated by the Endemic Dipterocarp Pakaraimaea dipterocarpacea Matthew E. Smith1*, Terry W. Henkel2, Jessie K. Uehling2, Alexander K. Fremier3, H. David Clarke4, Rytas Vilgalys5 1 Department of Plant Pathology, University of Florida, Gainesville, Florida, United States of America, 2 Department of Biological Sciences, Humboldt State University, Arcata, California, United States of America, 3 Department of Fish and Wildlife Resources, University of Idaho, Moscow, Idaho, United States of America, 4 Department of Biology, University of North Carolina Asheville, Asheville, North Carolina, United States of America, 5 Department of Biology, Duke University, Durham, North Carolina, United States of America Abstract Ectomycorrhizal (ECM) plants and fungi can be diverse and abundant in certain tropical ecosystems. For example, the primarily paleotropical ECM plant family Dipterocarpaceae is one of the most speciose and ecologically important tree families in Southeast Asia. Pakaraimaea dipterocarpacea is one of two species of dipterocarp known from the Neotropics, and is also the only known member of the monotypic Dipterocarpaceae subfamily Pakaraimoideae. This Guiana Shield endemic is only known from the sandstone highlands of Guyana and Venezuela. Despite its unique phylogenetic position and unusual geographical distribution, the ECM fungal associations of P. dipterocarpacea are understudied throughout the tree’s range. In December 2010 we sampled ECM fungi on roots of P. dipterocarpacea and the co-occurring ECM tree Dicymbe jenmanii (Fabaceae subfamily Caesalpinioideae) in the Upper Mazaruni River Basin of Guyana. Based on ITS rDNA sequencing we documented 52 ECM species from 11 independent fungal lineages. Due to the phylogenetic distance between the two host tree species, we hypothesized that P. -
Closterium Thailandicum N
Tropical palynofloras from Middle Miocene Chiang Muan basin, Phayao, Thailand Wickanet Songtham1, Benjavun Ratanasthien2 and Dallas C. Mildenhall3 1 Bureau of Geological Survey, Department of Geological Resources, Rama VI Road, Ratchathevee, Bangkok 10400, Thailand 2 Department of Geological Sciences, Faculty of Science, Chiang Mai University, Chiang Mai 50200 Thailand 3 Institute of Geological and Nuclear Sciences, Lower Hutt, P.O. Box 30-368 New Zealand Á¦¼´µ °¡¦¦Å¤oÁ ¦°µÂ°o Án ¸¥¤nª ´®ª¡³Á¥µ´ ª·Á« ¦¦¦¤1, ÁȪ¦¦ ¦´Á¸¥¦2 ¨³ Dallas C. Mildenhall3 1 ε´¦¸ª¥µ· ¦¤¦´¡¥µ¦¦¸ ¡¦³¦µ¤¸É 6 ¦µÁª¸ ¦»Á¡¤®µ¦ 10400 2 £µª·µ¦ª¸ ·¥µ ³ª·¥µ«µ¦r ¤®µª·¥µ¨´¥Á¸¥Ä®¤n ´®ª´Á¥Ä®¤¸ n 50200 3 Institute of Geological and Nuclear Sciences, Lower Hutt, P.O. Box 30-368 New Zealand ABSTRACT Sporomorphs from sediments of Middle Miocene Chiang Muan basin include abundant Crassoretitriletes vanraadshoovenii, Actinastrum bansaense n. sp., and Closterium thailandicum n. sp., and common Dipterocarpaceae, Lagerstroemia, Ilexpollenites, Botryococcus, Myrtaceidites, and Combretum with rare forms of Florschuetzia, Homonoia, Calophyllum, Striatriletes susannae, and Mimosoideae. There are abundant Laevigatosporites haardtii fern spores in some horizons with various forms of as yet unidentified tricolporate and tricolpate pollen. The sporomorphs, representing tropical palynofloras derived from tropical monsoon forests, accumulated mainly in lacustrine depositional environments. Origins and distributions of the families Dipterocarpaceae and Myrtaceae are discussed and new criteria elucidating their paleophytogeographic histories in relation to northern Thailand are proposed. ´¥n° Á¦¼´µ °¨³°°Á¦ °¦r ¨³µ®¦nµ¥µ³°¤´¥Å¤Ã°¸°¨µµÂ°nÁ¸¥ ¤nªÃÁnoª¥°¦r ° Crassoretitriletes vanraadshoovenii µ®¦nµ¥Êεº Actinastrum bansaense n. -
Phylogeny of the Tropical Tree Family Dipterocarpaceae Based on Nucleotide Sequences of the Chloroplast Rbcl Gene1
American Journal of Botany 86(8): 1182±1190. 1999. PHYLOGENY OF THE TROPICAL TREE FAMILY DIPTEROCARPACEAE BASED ON NUCLEOTIDE SEQUENCES OF THE CHLOROPLAST RBCL GENE1 S. DAYANANDAN,2,6 PETER S. ASHTON,3 SCOTT M. WILLIAMS,4 AND RICHARD B. PRIMACK2 2Biology Department, Boston University, Boston, Massachusetts 02215; 3Harvard University Herbaria, 22 Divinity Avenue, Cambridge, Massachusetts 02138; and 4Division of Biomedical Sciences, Meharry Medical College, 1005 D. B. Todd, Jr. Boulevard, Nashville, Tennessee 37208 The Dipterocarpaceae, well-known trees of the Asian rain forests, have been variously assigned to Malvales and Theales. The family, if the Monotoideae of Africa (30 species) and South America and the Pakaraimoideae of South America (one species) are included, comprises over 500 species. Despite the high diversity and ecological dominance of the Dipterocar- paceae, phylogenetic relationships within the family as well as between dipterocarps and other angiosperm families remain poorly de®ned. We conducted parsimony analyses on rbcL sequences from 35 species to reconstruct the phylogeny of the Dipterocarpaceae. The consensus tree resulting from these analyses shows that the members of Dipterocarpaceae, including Monotes and Pakaraimaea, form a monophyletic group closely related to the family Sarcolaenaceae and are allied to Malvales. The present generic and higher taxon circumscriptions of Dipterocarpaceae are mostly in agreement with this molecular phylogeny with the exception of the genus Hopea, which forms a clade with Shorea sections Anthoshorea and Doona. Phylogenetic placement of Dipterocarpus and Dryobalanops remains unresolved. Further studies involving repre- sentative taxa from Cistaceae, Elaeocarpaceae, Hopea, Shorea, Dipterocarpus, and Dryobalanops will be necessary for a comprehensive understanding of the phylogeny and generic limits of the Dipterocarpaceae. -
New Species and Distribution Records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a Key to the Lowland Neotropical Taxa
fungal biology 116 (2012) 1263e1274 journal homepage: www.elsevier.com/locate/funbio New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa Jessie K. UEHLINGa,*,1, Terry W. HENKELa, M. Catherine AIMEb, Rytas VILGALYSc, Matthew E. SMITHd aDepartment of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA bDepartment of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA cDepartment of Biology, Duke University, Durham, NC 27708, USA dDepartment of Plant Pathology, University of Florida, Gainesville, FL 32611, USA article info abstract Article history: Three new and one previously described species of Clavulina (Clavulinaceae, Cantharel- Received 4 April 2012 lales, Basidiomycota) are reported from the central Guiana Shield region from tropical rain- Received in revised form forests dominated by ectomycorrhizal trees of the leguminous genus Dicymbe (Fabaceae 19 September 2012 subfam. Caesalpinioideae). We provide morphological, DNA sequence, habitat, and fruiting Accepted 21 September 2012 occurrence data for each species. The new species conform to a generic concept of Clavu- Available online 7 November 2012 lina that includes coralloid, branched basidiomata with amphigenous hymenia, basidia Corresponding Editor: with two or 2À4 incurved sterigmata and postpartal septa present or absent, and smooth, H. Thorsten Lumbsch hyaline, guttulate basidiospores. Placements of the new species in Clavulina were corrobo- rated with DNA sequence data from the internal transcribed spacer and large subunit of Keywords: the nuclear ribosomal repeat, and their infrageneric relationships were examined with Cantharelloid clade phylogenetic analyses based on DNA from the region coding for the second largest subunit Coral fungi of DNA-dependent RNA polymerase II (rpb2). -
Karyomorphology and Its Evolution in Dipterocarpaceae (Malvales)
© 2020 The Japan Mendel Society Cytologia 85(2): 141–149 Karyomorphology and Its Evolution in Dipterocarpaceae (Malvales) Kazuo Oginuma1*, Shawn Y. K. Lum2 and Hiroshi Tobe3 1 The Community Center for the Advancement of Education and Research at the University of Kochi, 5–15 Eikokuji-cho, Kochi 780–8515, Japan 2 Asian School of the Environment, Nanyang Technological University, Singapore 639798 3 Department of Botany, Graduate School of Science, Kyoto University, Kyoto 606–8502, Japan Received January 16, 2020; accepted February 9, 2020 Summary Previous chromosome information is restricted to Dipterocarpoideae, one of the two subfamilies of Dipterocarpaceae, and no chromosome information is available for another subfamily Monotoideae. Here we present the first karyomorphology of Marquesia macroura (2n=22) (Monotoideae), as well as of four species (2n=22) of four genera in tribe Dipterocarpeae and five species (2n=14) of tribe Shoreae in Dipterocarpoideae. Comparisons within Dipterocarpaceae and with Sarcolaenaceae (2n=22) sister to Dipetrocarpaceae in the light of phylogenetic relationships show that the basic chromosome number x=11 is plesiomorphic and x=7 apomor- phic in Dipterocapaceae. Based on available information, tribe Shoreae (x=7) has a uniform karyotype where all chromosomes have a centromere at median position, while the rest of the family (x=11) have a diverse karyotype in terms of the frequency of chromosomes with a centromere at median, submedian and subterminal position. We discussed the meaning of lability of karyotype in chromosome evolution. Keywords Basic chromosome number, Chromosome evolution, Dipterocarpaceae, Karyomorphology. Dipterocarpaceae (Malvales) are a family of 16 gen- x=10, and five genera Dryobalanops, Hopea, Neobala- era and 680 species distributed in tropical regions of nocarpus, Parashorea and Shorea of tribe Shoreae all the Old World, especially in the rain forests of Malesia have x=7. -
Historical Biogeography and Diversification of the Cosmopolitan Ectomycorrhizal Mushroom Family Inocybaceae
Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae P. Brandon Matheny1*, M. Catherine Aime2, Neale L. Bougher3, Bart Buyck4, Dennis E. Desjardin5, Egon Horak6, Bradley R. Kropp7, D. Jean Lodge8, Kasem Soytong9, James M. Trappe10 and David S. Hibbett11 ABSTRACT Aim The ectomycorrhizal (ECM) mushroom family Inocybaceae is widespread in north temperate regions, but more than 150 species are encountered in the tropics and the Southern Hemisphere. The relative roles of recent and ancient biogeographical processes, relationships with plant hosts, and the timing of divergences that have shaped the current geographic distribution of the family are investigated. location Africa, Australia, Neotropics, New Zealand, north temperate zone, Palaeotropics, Southeast Asia, South America, south temperate zone. Methods We reconstruct a phylogeny of the Inocybaceae with a geological timeline using a relaxed molecular clock. Divergence dates of lineages are estimated statistically to test vicariance-based hypotheses concerning relatedness of disjunct ECM taxa. A series of internal maximum time constraints is used to evaluate two different calibrations. Ancestral state reconstruction is used to infer ancestral areas and ancestral plant partners of the family. Results The Palaeotropics are unique in containing representatives of all major clades of Inocybaceae. Six of the seven major clades diversified initially during the Cretaceous, with subsequent radiations probably during the early Palaeogene. Vicariance patterns cannot be rejected that involve area relationships for Africa- Australia, Africa-India and southern South America-Australia. Northern and southern South America, Australia and New Zealand are primarily the recipients of immigrant taxa during the Palaeogene or later. Angiosperms were the earliest hosts of Inocybaceae. -
ABSTRACTS 117 Systematics Section, BSA / ASPT / IOPB
Systematics Section, BSA / ASPT / IOPB 466 HARDY, CHRISTOPHER R.1,2*, JERROLD I DAVIS1, breeding system. This effectively reproductively isolates the species. ROBERT B. FADEN3, AND DENNIS W. STEVENSON1,2 Previous studies have provided extensive genetic, phylogenetic and 1Bailey Hortorium, Cornell University, Ithaca, NY 14853; 2New York natural selection data which allow for a rare opportunity to now Botanical Garden, Bronx, NY 10458; 3Dept. of Botany, National study and interpret ontogenetic changes as sources of evolutionary Museum of Natural History, Smithsonian Institution, Washington, novelties in floral form. Three populations of M. cardinalis and four DC 20560 populations of M. lewisii (representing both described races) were studied from initiation of floral apex to anthesis using SEM and light Phylogenetics of Cochliostema, Geogenanthus, and microscopy. Allometric analyses were conducted on data derived an undescribed genus (Commelinaceae) using from floral organs. Sympatric populations of the species from morphology and DNA sequence data from 26S, 5S- Yosemite National Park were compared. Calyces of M. lewisii initi- NTS, rbcL, and trnL-F loci ate later than those of M. cardinalis relative to the inner whorls, and sepals are taller and more acute. Relative times of initiation of phylogenetic study was conducted on a group of three small petals, sepals and pistil are similar in both species. Petal shapes dif- genera of neotropical Commelinaceae that exhibit a variety fer between species throughout development. Corolla aperture of unusual floral morphologies and habits. Morphological A shape becomes dorso-ventrally narrow during development of M. characters and DNA sequence data from plastid (rbcL, trnL-F) and lewisii, and laterally narrow in M. -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
Lowland Vegetation of Tropical South America -- an Overview
Lowland Vegetation of Tropical South America -- An Overview Douglas C. Daly John D. Mitchell The New York Botanical Garden [modified from this reference:] Daly, D. C. & J. D. Mitchell 2000. Lowland vegetation of tropical South America -- an overview. Pages 391-454. In: D. Lentz, ed. Imperfect Balance: Landscape Transformations in the pre-Columbian Americas. Columbia University Press, New York. 1 Contents Introduction Observations on vegetation classification Folk classifications Humid forests Introduction Structure Conditions that suppport moist forests Formations and how to define them Inclusions and archipelagos Trends and patterns of diversity in humid forests Transitions Floodplain forests River types Other inundated forests Phytochoria: Chocó Magdalena/NW Caribbean Coast (mosaic type) Venezuelan Guayana/Guayana Highland Guianas-Eastern Amazonia Amazonia (remainder) Southern Amazonia Transitions Atlantic Forest Complex Tropical Dry Forests Introduction Phytochoria: Coastal Cordillera of Venezuela Caatinga Chaco Chaquenian vegetation Non-Chaquenian vegetation Transitional vegetation Southern Brazilian Region Savannas Introduction Phytochoria: Cerrado Llanos of Venezuela and Colombia Roraima-Rupununi savanna region Llanos de Moxos (mosaic type) Pantanal (mosaic type) 2 Campo rupestre Conclusions Acknowledgments Literature Cited 3 Introduction Tropical lowland South America boasts a diversity of vegetation cover as impressive -- and often as bewildering -- as its diversity of plant species. In this chapter, we attempt to describe the major types of vegetation cover in this vast region as they occurred in pre- Columbian times and outline the conditions that support them. Examining the large-scale phytogeographic regions characterized by each major cover type (see Fig. I), we provide basic information on geology, geological history, topography, and climate; describe variants of physiognomy (vegetation structure) and geography; discuss transitions; and examine some floristic patterns and affinities within and among these regions. -
A Handbook of the Dipterocarpaceae of Sri Lanka
YAYASAN TUMBUH-TUMBUHAN YANG BERGUNA FOUNDATION FOR USEFUL PLANTS OF TROPICAL ASIA VOLUME III A HANDBOOK OF THE DIPTEROCARPACEAE OF SRI LANKA YAYASAN TUMBUH-TUMBUHAN YANG BERGUNA FOUNDATION FOR USEFUL PLANTS OF TROPICAL ASIA VOLUME III A HANDBOOK OF THE DIPTEROCARPACEAE OF SRI LANKA A.J.G.H. KOSTERMANS Wildlife Heritage Trust of Sri Lanka A HAND BOOK OF THE DIPTEROCARPACEAE OF SRI LANKA A.J.G.H Kostermans Copyright © 1992 by the Wildlife Heritage Trust of Sri Lanka ISBN 955-9114-05-0 All rights reserved. No part of this work covered by the copyright hereon may be reproduced or used in any form or by any means — graphic, electronic or mechanical, including photocopying or information storage and retrieval systems — without permission of the publisher. Manufactured in the Republic of Indonesia Published by the Wildlife Heritage Trust of Sri Lanka, Colombo 8, Sri Lanka Printed by PT Gramedia, Jakarta under supervision of PT Gramedia Pustaka Utama (Publisher), Jakarta 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1 CONTENTS Preface 1 Acknowledgments 3 List of illustrations 5 Introduction 8 History of taxonomy 19 Ecology and vegetation classification 22 Dipterocarpaceae and key to the genera 27 Species 29 References 137 Abbreviations 147 Collector's numbers 147 Index of vernacular names 149 Index of scientific names 149 PREFACE Since the publication of P. Ashton's revision of the Dipterocarpaceae of Sri Lanka in 1977 (reprinted in 1980), a fair number of changes have appeared in this family, a large number of new species has been published in periodicals not always easily accessible and, hence, we thought it appropriate to bring together in a single volume an up-to-date overview of the family in Sri Lanka. -
Rain Forests: Floristics - F
TROPICAL BIOLOGY AND CONSERVATION MANAGEMENT - Vol. IV - Rain Forests: Floristics - F. Z. Saiter, T. Wendt, D. M. Villela and M. T. Nascimento RAIN FORESTS: FLORISTICS F. Z. Saiter Instituto Estadual de Meio Ambiente e Recursos Hídricos, Espírito Santo, Brazil T. Wendt Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil D. M. Villela Universidade Estadual do Norte Fluminense, Rio de Janeiro, Brazil M. T. Nascimento Universidade Estadual do Norte Fluminense, Rio de Janeiro, Brazil Keywords: Tropical forests, floristic composition, biodiversity, monodominance, nutrient cycling. Contents 1. Introduction 2. Global distribution and main features of tropical rain forests 2.1. The Neotropical Rain Forest 2.2. The African Rain Forest 2.3. The Indo-Malayan and Australian Rain Forest 3. Floristic patterns 4. Biodiversity 4.1. Tropical Rain Forests are generally Rich in Species and Endemism 4.2. The Diversity in Local Scale 4.3. Diversity as a Result of Latitudinal Gradients 4.4. The Paradox of the Monodominant Forests 5. The tropical rain forests are dynamic 6. Nutrient cycling 6.1 An Overview 6.2. Environmental Conditions Which Drive Nutrient Cycling in the Rain Forests 6.3. FloristicUNESCO Composition, Diversity, Nutrient – Cycling EOLSS and Rain Forest Management 7. Conclusion and Outlook Glossary Bibliography Biographical SketchesSAMPLE CHAPTERS Summary The tropical rain forest is well-known for its megadiversity and some important ecological services, especially on climate regulation. This forest type occurs in all four major tropical zones (America, Africa, Indo-Malaya and Australia) and covers about seven percent of the Earth’s forest area. Floristic composition varies largely within and among the main phytogeographic regions. -
<I>Amanita</I> Subgen
VOLUME 3 JUNE 2019 Fungal Systematics and Evolution PAGES 1–12 doi.org/10.3114/fuse.2019.03.01 New species of Amanita subgen. Lepidella from Guyana K.S. Mighell1, T.W. Henkel1*, R.A. Koch2, A. Goss1, M.C. Aime2 1Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA 2Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA *Corresponding author: [email protected] Key words: Abstract: New species of Amanita subgen. Lepidella are described from Guyana. Amanita cyanochlorinosma sp. ectomycorrhizal fungi nov., Amanita fulvoalba sp. nov., and Amanita guyanensis sp. nov. represent the latest additions to the growing Guiana Shield body of newly described ectomycorrhizal fungi native to Dicymbe-dominated tropical rainforests. Macro- and monodominant forests micromorphological characters, habitat, and DNA sequence data for the ITS, nrLSU, rpb2, and ef1-α are provided Neotropics for each taxon, and b-tubulin for most. Distinctive morphological features warrant the recognition of the three new new taxa species and a molecular phylogenetic analysis of taxa acrossAmanita subgen. Lepidella corroborates their infrageneric systematics placements. taxonomy Effectively published online: 28 November 2018. INTRODUCTION from the tropics (Thongbai et al. 2016). Tropical Amanita species frequently occur in spatially restricted mono- or co-dominant Amanita (Amanitaceae, Agaricomycetes, Basidiomycota) is a stands of ECM host trees, and thus appear to have smaller Editor-in-Chief monophyleticProf. dr P.W. Crous, Westerdijk mushroom Fungal Biodiversity genus Institute, with P.O. cosmopolitan Box 85167, 3508 AD Utrecht, distribution The Netherlands. geographic ranges. They can, however, be a major component E-mail: [email protected] (Drehmel et al.