Decapoda, Thalassinidea) III
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Abstracts of Technical Papers, Presented at the 104Th Annual Meeting, National Shellfisheries Association, Seattle, Ashingtw On, March 24–29, 2012
W&M ScholarWorks VIMS Articles 4-2012 Abstracts of Technical Papers, Presented at the 104th Annual Meeting, National Shellfisheries Association, Seattle, ashingtW on, March 24–29, 2012 National Shellfisheries Association Follow this and additional works at: https://scholarworks.wm.edu/vimsarticles Part of the Aquaculture and Fisheries Commons Recommended Citation National Shellfisheries Association, Abstr" acts of Technical Papers, Presented at the 104th Annual Meeting, National Shellfisheries Association, Seattle, ashingtW on, March 24–29, 2012" (2012). VIMS Articles. 524. https://scholarworks.wm.edu/vimsarticles/524 This Article is brought to you for free and open access by W&M ScholarWorks. It has been accepted for inclusion in VIMS Articles by an authorized administrator of W&M ScholarWorks. For more information, please contact [email protected]. Journal of Shellfish Research, Vol. 31, No. 1, 231, 2012. ABSTRACTS OF TECHNICAL PAPERS Presented at the 104th Annual Meeting NATIONAL SHELLFISHERIES ASSOCIATION Seattle, Washington March 24–29, 2012 231 National Shellfisheries Association, Seattle, Washington Abstracts 104th Annual Meeting, March 24–29, 2012 233 CONTENTS Alisha Aagesen, Chris Langdon, Claudia Hase AN ANALYSIS OF TYPE IV PILI IN VIBRIO PARAHAEMOLYTICUS AND THEIR INVOLVEMENT IN PACIFICOYSTERCOLONIZATION........................................................... 257 Cathryn L. Abbott, Nicolas Corradi, Gary Meyer, Fabien Burki, Stewart C. Johnson, Patrick Keeling MULTIPLE GENE SEGMENTS ISOLATED BY NEXT-GENERATION SEQUENCING -
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https://theses.gla.ac.uk/ Theses Digitisation: https://www.gla.ac.uk/myglasgow/research/enlighten/theses/digitisation/ This is a digitised version of the original print thesis. Copyright and moral rights for this work are retained by the author A copy can be downloaded for personal non-commercial research or study, without prior permission or charge This work cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Enlighten: Theses https://theses.gla.ac.uk/ [email protected] ASPECTS OF THE BIOLOGY OF THE SQUAT LOBSTER, MUNIDA RUGOSA (FABRICIUS, 1775). Khadija Abdulla Yousuf Zainal, BSc. (Cairo). A thesis submitted for the degree of Doctor of Philosophy to the Faculty of Science at the University of Glasgow. August 1990 Department of Zoology, University of Glasgow, Glasgow, G12 8QQ. University Marine Biological Station, Millport, Isle of Cumbrae, Scotland KA28 OEG. ProQuest Number: 11007559 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a com plete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest ProQuest 11007559 Published by ProQuest LLC(2018). -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Zootaxa: Systematics of the Genus Scleroplax Rathbun, 1893
Zootaxa 1344: 33–41 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1344 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Systematics of the genus Scleroplax Rathbun, 1893 (Crustacea: Brachyura: Pinnotheridae) ERNESTO CAMPOS Facultad de Ciencias, Universidad Autónoma de Baja California, Apartado Postal 2300, Ensenada, Baja California, 22800 México. E-mail: [email protected]; [email protected] Abstract The taxonomic status of the monotypic genus Scleroplax Rathbun, 1893, is evaluated and separated from other genera of the Pinnixa White, 1846, complex. Distinguishing characters of Scleroplax are a hard, subheptagonal and dorsally, highly convex carapace, and a third maxilliped with a propodus that extends to the end of the dactylus. The genera Scleroplax, Pinnixa, Austinixa Heard & Manning, 1997, Glassella Campos & Wicksten, 1997, Indopinnixa Manning & Morton, 1987, and Tetrias Rathbun, 1898, share a carapace than is wider than long and a distinct lateral exopod lobe on the third maxilliped, all of which may represent monophyletic characters. Updated information on the distribution and hosts of S. granulata Rathbun, 1893, indicate that the species now ranges from Vancouver Island, British Columbia, Canada to El Coyote estuary, Punta Abreojos, Baja California Sur, México. It inhabits burrows of the echiuroid Urechis caupo Fisher & MacGinitie, 1928, and the mud shrimps Neotrypaea californiensis (Dana, 1854), N. gigas (Dana, 1852) (new host record), Upogebia pugettensis (Dana, 1852), and occasionally U. macginiteorum Williams, 1986 (new host record). Key words: Crustacea, Brachyura, Pinnotheridae, Scleroplax, systematics, geographic distribution, new hosts Resumen El estatus taxonómico del género monotípico Scleroplax Rathbun, 1893, es evaluado y separado de otros géneros del complejo Pinnixa White, 1846. -
Upogebia Pugettensis Class: Malacostraca Order: Decapoda Section: Anomura, Paguroidea the Blue Mud Shrimp Family: Upogebiidae
Phylum: Arthropoda, Crustacea Upogebia pugettensis Class: Malacostraca Order: Decapoda Section: Anomura, Paguroidea The blue mud shrimp Family: Upogebiidae Taxonomy: Dana described Gebia (on either side of the mouth), two pairs of pugettensis in 1852 and this species was later maxillae and three pairs of maxillipeds. The redescribed as Upogebia pugettensis maxillae and maxillipeds attach posterior to (Stevens 1928; Williams 1986). the mouth and extend to cover the mandibles (Ruppert et al. 2004). Description Carapace: Bears two rows of 11–12 Size: The type specimen was 50.8 mm in teeth laterally (Fig. 1) in addition to a small length and the illustrated specimen (ovigerous distal spines (13 distal spines, 20 lateral teeth female from Coos Bay, Fig. 1) was 90 mm in on carapace shoulder, see Wicksten 2011). length. Individuals are often larger and reach Carapace with thalassinidean line extending sizes to 100 mm (range 75–112 mm) and from anterior to posterior margin (Wicksten northern specimens are larger than those in 2011). southern California (MacGinitie and Rostrum: Large, tridentate, obtuse, MacGinitie 1949; Wicksten 2011). rough and hairy (Schmitt 1921), the sides Color: Light blue green to deep olive brown bear 3–5 short conical teeth (Wicksten 2011). with brown fringes on pleopods and pleon. Rostral tip shorter than antennular peduncle. Individual color variable and may depend on Two short processes extending on either side feeding habits (see Fig. 321, Kozloff 1993; each with 0–2 dorsal teeth (Wicksten 2011). Wicksten 2011). Teeth: General Morphology: The body of decapod Pereopods: Two to five simple crustaceans can be divided into the walking legs. -
Systematics, Phylogeny, and Taphonomy of Ghost Shrimps (Decapoda): a Perspective from the Fossil Record
73 (3): 401 – 437 23.12.2015 © Senckenberg Gesellschaft für Naturforschung, 2015. Systematics, phylogeny, and taphonomy of ghost shrimps (Decapoda): a perspective from the fossil record Matúš Hyžný *, 1, 2 & Adiël A. Klompmaker 3 1 Geological-Paleontological Department, Natural History Museum Vienna, Burgring 7, 1010 Vienna, Austria; Matúš Hyžný [hyzny.matus@ gmail.com] — 2 Department of Geology and Paleontology, Faculty of Natural Sciences, Comenius University, Mlynská dolina, Ilkovičova 6, SVK-842 15 Bratislava, Slovakia — 3 Florida Museum of Natural History, University of Florida, 1659 Museum Road, PO Box 117800, Gaines- ville, FL 32611, USA; Adiël A. Klompmaker [[email protected]] — * Correspond ing author Accepted 06.viii.2015. Published online at www.senckenberg.de/arthropod-systematics on 14.xii.2015. Editor in charge: Stefan Richter. Abstract Ghost shrimps of Callianassidae and Ctenochelidae are soft-bodied, usually heterochelous decapods representing major bioturbators of muddy and sandy (sub)marine substrates. Ghost shrimps have a robust fossil record spanning from the Early Cretaceous (~ 133 Ma) to the Holocene and their remains are present in most assemblages of Cenozoic decapod crustaceans. Their taxonomic interpretation is in flux, mainly because the generic assignment is hindered by their insufficient preservation and disagreement in the biological classification. Fur- thermore, numerous taxa are incorrectly classified within the catch-all taxonCallianassa . To show the historical patterns in describing fos- sil ghost shrimps and to evaluate taphonomic aspects influencing the attribution of ghost shrimp remains to higher level taxa, a database of all fossil species treated at some time as belonging to the group has been compiled: 250 / 274 species are considered valid ghost shrimp taxa herein. -
Two New Paleogene Species of Mud Shrimp (Crustacea, Decapoda, Upogebiidae) from Europe and North America
Bulletin of the Mizunami Fossil Museum, no. 33 (2006), p. 77–85, 2 pls., 1 fig. © 2006, Mizunami Fossil Museum Two new Paleogene species of mud shrimp (Crustacea, Decapoda, Upogebiidae) from Europe and North America Rene H. B. Fraaije1, Barry W. M. van Bakel1, John W. M. Jagt2, and Yvonne Coole3 1Oertijdmuseum De Groene Poort, Bosscheweg 80, NL-5283 WB Boxtel, the Netherlands <[email protected]> 2Natuurhistorisch Museum Maastricht, de Bosquetplein 6-7, NL-6211 KJ Maastricht, the Netherlands <[email protected]> 3St. Maartenslaan 88, NL-6039 BM Stramproy, the Netherlands Abstract Two new species of the mud shrimp genus Upogebia (Callianassoidea, Upogebiidae) are described; U. lambrechtsi sp. nov. from the lower Eocene (Ypresian) of Egem (northwest Belgium), and U. barti sp. nov. from the upper Oligocene (Chattian) of Washington State (USA). Both new species here described have been collected from small, ball-shaped nodules; they are relatively well preserved and add important new data on the palaeobiogeographic distribution of fossil upogebiids. Key words: Crustacea, Decapoda, Upogebiidae, Eocene, Oligocene, Belgium, USA, new species Introduction Jurassic species of Upogebia have been recorded, in stratigraphic order: On modern tidal flats, burrowing upogebiid shrimps constitute the dominant decapod crustacean group. For instance, in the 1 – Upogebia rhacheochir Stenzel, 1945 (p. 432, text-fig. 12; pl. intertidal zone of the northern Adriatic (Mediterranean, southern 42); Britton Formation (Eagle Ford Group), northwest of Dallas Europe) up to 200 individuals per square metre have been recorded (Texas, USA). Stenzel (1945, p. 408) dated the Britton (Dworschak, 1987). Worldwide, several dozens of species of Formation as early Turonian, but a late Cenomanian age is Upogebia and related genera are known, and their number is still more likely (compare Jacobs et al., 2005). -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
Biology of Mediterranean and Caribbean Thalassinidea (Decapoda)
Biology of Mediterranean and Caribbean Thalassinidea (Decapoda) Peter C. DWORSCHAK Dritte Zoologische Abteilung, Naturhistorisches Museum, Burgring 7, A 1014 Wien, Austria ([email protected]) Abstract Among burrowing organisms, the most complex and extensive burrow systems are found within the Thalassinidea. This group of decapods comprises some 520+ species in currently 11 families and 80+ genera. They live predominantly in very shallow waters, where they often occur in high densities and influence the whole sedimentology and geochemistry of the seabed. In this contribution I present results of studies on the biology of several Mediterranean (Upogebia pusilla, U. tipica, Pestarella tyrrhena, P. candida, Jaxea nocturna) and Caribbean (Axiopsis serratifrons, Neocallichirus grandimana, Glypturus acanthochirus, Corallianassa longiventris) species. Of special interest is the occurrence of debris-filled chambers in the burrows of two callianassid species, Pestarella tyrrhena and Corallianassa longiventris. The possible role of this introduced plant material for the nutrition of the shrimps is discussed. 1. Introduction The Thalassinidea are a group of mainly burrowing decapod shrimps. They have attracted increased attention in recent ecological studies on marine soft-bottom benthos, especially in terms of their influence on the whole sedimentology and geochemistry of the seabed (Ziebis et al., 1996a, b), their bioturbating activities (Rowden & Jones, 1993; Rowden et al., 1998a, b) and consequent effects on benthic community structure (Posey, 1986; Posey et al., 1991; Wynberg & Branch, 1994; Tamaki, 1994). They are of particular interest because they construct very complex and extensive burrow systems (Griffis & Suchanek, 1991; Nickell & Atkinson, 1995). This group of decapods comprises some 520+ species in currently 11 families and 80+ genera. -
Synopsis of the Family Callianassidae, with Keys to Subfamilies, Genera and Species, and the Description of New Taxa (Crustacea: Decapoda: Thalassinidea)
ZV-326 (pp 03-152) 02-01-2007 14:37 Pagina 3 Synopsis of the family Callianassidae, with keys to subfamilies, genera and species, and the description of new taxa (Crustacea: Decapoda: Thalassinidea) K. Sakai Sakai, K. Synopsis of the family Callianassidae, with keys to subfamilies, genera and species, and the description of new taxa (Crustacea: Decapoda: Thalassinidea). Zool. Verh. Leiden 326, 30.vii.1999: 1-152, figs 1-33.— ISSN 0024-1652/ISBN 90-73239-72-9. K. Sakai, Shikoku University, 771-1192 Tokushima, Japan, e-mail: [email protected]. Key words: Crustacea; Decapoda; Thalassinidae; Callianassidae; synopsis. A synopsis of the family Callianassidae is presented. Defenitions are given of the subfamilies and genera. Keys to the sufamilies, genera, as well as seperate keys to the species occurring in certain bio- geographical areas are provided. At least the synonymy, type-locality, and distribution of the species are listed. The following new taxa are described: Calliapaguropinae subfamily nov., Podocallichirus genus nov., Callianassa whitei spec. nov., Callianassa gruneri spec. nov., Callianassa ngochoae spec. nov., Neocallichirus kempi spec. nov. and Calliax doerjesti spec. nov. Contents Introduction ............................................................................................................................. 3 Systematics .............................................................................................................................. 7 Subfamily Calliapaguropinae nov. ..................................................................................... -
Biology and Ecological Energetics of the Supralittoral Isopod Ligia Dilatata
BIOLOGY AND ECOLOGICAL ENERGETICS OF THE SUPRALITTORAL ISOPOD LIGIA DILATATA Town Cape byof KLAUS KOOP University Submitted for the degree of Master of Science in the Department of Zoology at the University of Cape Town. 1979 \ The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University (i) TABLE OF CONTENTS Page No. CHAPTER 1 INTRODUCTION 1 CHAPTER 2 .METHODS 4 2.1 The Study Area 4 2.2 Temperature Town 6 2.3 Kelo Innut 7 - -· 2.4 Population Dynamics 7 Field Methods 7 Laboratory Methods Cape 8 Data Processing of 11 2.5 Experimental 13 Calorific Values 13 Lerigth-Mass Relationships 14 Food Preference, Feeding and Faeces Production 14 RespirationUniversity 16 CHAPTER 3 RESULTS AND .DISCUSSION 18 3.1 Biology of Ligia dilatata 18 Habitat and Temperature Regime 18 Kelp Input 20 Feeding and Food Preference 20 Reproduction 27 Sex Ratio 30 Fecundity 32 (ii) Page No. 3.2 Population Structure and Dynamics 35 Population Dynamics and Reproductive Cycle 35 Density 43 Growth and Ageing 43 Survivorship and Mortality 52 3.3 Ecological Energetics 55 Calorific Values 55 Length-Mass Relationships 57 Production 61 Standing Crop 64 Consumption 66 Egestion 68 Assimilation 70 Respiration 72 3.4 The Energy Budget 78 Population Consumption, Egestion and Assimilation 78 Population Respiration 79 Terms of the Energy Budget 80 CHAPTER 4 CONCLUSIONS 90 CHAPTER 5 ACKNOWLEDGEMENTS 94 REFERENCES 95 1 CHAPTER 1 INTRODUCTION Modern developments in ecology have emphasised the importance of energy and energy flow in biological systems. -
The Significance of Shore Height in Intertidal Macrobenthic Seagrass
AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS Aquatic Conserv: Mar. Freshw. Ecosyst. 21: 614–624 (2011) Published online 20 October 2011 in Wiley Online Library (wileyonlinelibrary.com). DOI: 10.1002/aqc.1234 The significance of shore height in intertidal macrobenthic seagrass ecology and conservation R. S. K. BARNESa,b,* and M. D. F. ELLWOODb aKnysna Field Laboratory, Department of Zoology and Entomology, Rhodes University, P.O. Box 1186, Knysna, RSA bDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK ABSTRACT 1. Benthic faunal assemblages of an intertidal seagrass bed were sampled at three shore heights (LWN, MLW, LWS) at the mouth, mid-point and head of the Steenbok Channel in South Africa’s premier seagrass site, the warm-temperate Knysna estuarine bay, Garden Route National Park. 2. Faunal abundance, species richness, species diversity, and proportion of rare species were relatively uniform along the Channel, as were faunal abundance, species diversity and proportion of rare species down the shore. Overall species richness per station, however, was significantly lower at LWN than at either MLW or LWS, although the distribution of species richness over the shore did not depart from random at one of the three sites. Overall faunal abundance and those of individual component species were dispersed patchily through the bed. 3. The nature of the faunal assemblages present, however, varied significantly throughout the bed, both along the Channel at each shore-height horizon, and down the shore at each site. LWN assemblages formed a unit distinct from those at MLW and LWS. Overall, the shore-height axis accounted for 47% and the along-shore axis 28% of total assemblage variation.