CHM251 Organic Chemistry I Feb 2014
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S.T.E.T.Women's College, Mannargudi Semester Iii Ii M
S.T.E.T.WOMEN’S COLLEGE, MANNARGUDI SEMESTER III II M.Sc., CHEMISTRY ORGANIC CHEMISTRY - II – P16CH31 UNIT I Aliphatic nucleophilic substitution – mechanisms – SN1, SN2, SNi – ion-pair in SN1 mechanisms – neighbouring group participation, non-classical carbocations – substitutions at allylic and vinylic carbons. Reactivity – effect of structure, nucleophile, leaving group and stereochemical factors – correlation of structure with reactivity – solvent effects – rearrangements involving carbocations – Wagner-Meerwein and dienone-phenol rearrangements. Aromatic nucleophilic substitutions – SN1, SNAr, Benzyne mechanism – reactivity orientation – Ullmann, Sandmeyer and Chichibabin reaction – rearrangements involving nucleophilic substitution – Stevens – Sommelet Hauser and von-Richter rearrangements. NUCLEOPHILIC SUBSTITUTION Mechanism of Aliphatic Nucleophilic Substitution. Aliphatic nucleophilic substitution clearly involves the donation of a lone pair from the nucleophile to the tetrahedral, electrophilic carbon bonded to a halogen. For that reason, it attracts to nucleophile In organic chemistry and inorganic chemistry, nucleophilic substitution is a fundamental class of reactions in which a leaving group(nucleophile) is replaced by an electron rich compound(nucleophile). The whole molecular entity of which the electrophile and the leaving group are part is usually called the substrate. The nucleophile essentially attempts to replace the leaving group as the primary substituent in the reaction itself, as a part of another molecule. The most general form of the reaction may be given as the following: Nuc: + R-LG → R-Nuc + LG: The electron pair (:) from the nucleophile(Nuc) attacks the substrate (R-LG) forming a new 1 bond, while the leaving group (LG) departs with an electron pair. The principal product in this case is R-Nuc. The nucleophile may be electrically neutral or negatively charged, whereas the substrate is typically neutral or positively charged. -
Review 0103 - 5053 $6.00+0.00
http://dx.doi.org/10.5935/0103-5053.20150045 J. Braz. Chem. Soc., Vol. 26, No. 5, 837-850, 2015. Printed in Brazil - ©2015 Sociedade Brasileira de Química Review 0103 - 5053 $6.00+0.00 Recent Syntheses of Frog Alkaloid Epibatidine Ronaldo E. de Oliveira Filho and Alvaro T. Omori* Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, 09210-580 Santo André-SP, Brazil Many natives from Amazon use poison secreted by the skin of some colorful frogs (Dendrobatidae) on the tips of their arrows to hunt. This habit has generated interest in the isolation of these toxins. Among the over 500 isolated alkaloids, the most important is undoubtedly (-)-epibatidine. First isolated in 1992, by Daly from Epipedobates tricolor, this compound is highly toxic (LD50 about 0.4 µg per mouse). Most remarkably, its non-opioid analgesic activity was found to be about 200 times stronger than morphine. Due to its scarcity, the limited availability of natural sources, and its intriguing biological activity, more than 100 synthetic routes have been developed since the epibatidine structure was assigned. This review presents the recent formal and total syntheses of epibatidine since the excellent review published in 2002 by Olivo et al.1 Mainly, this review is summarized by the method used to obtain the azabicyclic core. Keywords: epibatidine, organic synthesis, azanorbornanes H Cl H 1. Introduction N N O N N At an expedition to Western Ecuador in 1974, Daly and Myers isolated traces of an alkaloid with potential biological (–)-Epibatidine(1) Epiboxidine(1a) activity from the skin of the species Epipedobastes tricolor. -
Chem. Pharm. Bull. 68(1): 1-33 (2020)
Vol. 68, No. 1 Chem. Pharm. Bull. 68, 1–33 (2020) 1 Review Development of New Synthetic Reactions Using Hetero-Heavy Atoms and Their Application to Synthesis of Biofunctional Molecules Shinya Harusawa Osaka University of Pharmaceutical Sciences; 4–20–1 Nasahara, Takatsuki, Osaka 569–1094, Japan. Received July 30, 2019 Novel reactions using hetero-heavy atoms (P, S, Si, Se, and Sn) were developed and applied to the syn- thesis of biofunctional molecules and some medicine-candidates, in which the following items are covered. 1) Development of introduction of C1-unit using cyanophosphates (CPs). 2) Carbene-generation under neutral condition from CPs and its application to organic synthesis. 3) [3,3]Sigmatropic rearrangement-ring expan- sion reactions of medium-sized cyclic thionocarbonates containing a sulfur atom and their application to natural product synthesis. 4) Stereoselective synthesis of novel β-imidazole C-nucleosides via diazafulvene intermediates and their application to investigating ribozyme reaction mechanism. 5) Developments of novel histamine H3- and H4-receptor ligands using new synthetic methods involving Se or Sn atoms. Key words cyanophosphate; carbene; sigmatropic rearrangement; ribozyme; histamine H3 receptor; antagonist 1. Introduction with DEPC to afford α-amino nitriles, the function of which is Organic synthesis has reached a high degree of perfection. easily converted into α-amino acids2) (Chart 2, Eq. 1); modi- However, reactions occurring within a living organism are fied Strecker synthesis for the preparation of α-amino nitriles much more mild, and more highly efficient, with specific- using DEPC from carbonyl compounds and amines in tetra- ity and selectivity. Thus, new efficient synthetic methods and hydrofuran (THF) under mild reaction conditions (Eq. -
Seminar 1 1. Classification and Nomenclature of Organic Compounds
Seminar_1 1. Classification and nomenclature of organic compounds. 2. Reaction mechanism 3. Saturated hydrocarbons (alkanes and cycloalkanes). TEST - Alkanes and Cycloalkanes 1. Classification and nomenclature of organic compounds. General Classification of Organic compounds Classification by functional group Base Name or Hydrocarbon name Chain Primary suffix Generic name C–C –ane Alkane C=C –ene Alkene CºC –yne Alkyne If the parent chain contains two, three or more double or triple bonds, then the following suffixes are used : Bond Two Three Double bond –diene –triene Triple bond –diyne –triyne The root word and the primary suffix together are known as Base Name or Hydrocarbon name. Formula IUPAC name( Base name) CH 4 Methane (Meth+ane) CH 3(CH 2)3CH 3 Pentane (Pent+ane) CH 3(CH 2)23 CH 3 Pentacosane (Pentacos+ane) CH 2 = CH 2 Ethene (Eth+ene) CH 3CH 2CH = CH 2 Butene (But + ene) CH 3CH 2CH=CH 2 Butene (But+ene) CH 3(CH 2)12 CH=CH 2 Pentadecene (Pentadec+ene) CH ≡CH Ethyne (Eth+yne) CH 3(CH 2)6C≡CH Nonyne (Non+yne) CH 3C≡CH Propyne (Prop+yne) 2. Reaction mechanism CATEGORIES OF ORGANIC REACTIONS Virtually all organic reactions fall into one of four categories: They are either substitutions, additions (cycloaddition), eliminations, or rearrangements, Ox/Red . (S) Substitutions are the characteristic reactions of saturated compounds such as alkanes and alkyl halides, and of aromatic compounds (even though they are unsaturated). In a substitution, one group replaces another. For example, methyl chloride reacts with sodiumhydroxide to produce methyl alcohol and sodium chloride: In this reaction a hydroxide ion from sodium hydroxide replaces the chlorine of methyl chloride. -
Mechanisms 1) Free Radical Substitution – Alkane
Mechanisms 1) Free radical substitution – Alkane à halogenoalkane Initiation: Propagation: Termination: Overall: 2) Ozone depletion • UV light breaks the C – Cl bond releasing chlorine radical . CFCl3F à CCl2F + Cl • This chlorine radical catalyses the decomposition of ozone with the chlorine radical coming out unchanged (and available for more ozone decomposition). Cl + O3 à ClO + O2 . ClO + O3 à Cl + 2O2 Overall 2O3(g) à 3O2(g) 3) Nucleophilic substitution of halogenoalkanes a) With aqueous hydroxide, OH- Hydrolysis – forming alcohols • This reaction converts a halogenoalkane to an alcohol Reagents: Aqueous sodium hydroxide Conditions: Reflux Hydrolysis: Splitting a molecule apart by using water molecules b) With ethanolic potassium cyanide, KCN – forming nitriles • This reaction converts a halogenoalkane to an alkyl nitrile • This is a key reaction in chemical synthesis as the carbon chain length is increased Reagents: Potassium cyanide dissolved in ethanol Conditions: Reflux c) With excess ethanolic ammonia, NH3 – forming amines • This reaction converts a halogenoalkane to amines Reagents: Excess ethanolic ammonia Conditions: Reflux The Mechanism 4) Elimination of halogenoalkanes With ethanolic potassium hydroxide, reflux – forming alkenes Reagents: KOH dissolved in ethanol Conditions: Reflux Substitution vs elimination Substitution Elimination Aqueous conditions – substitution Ethanolic conditions – Elimination predominates predominates OH- behaves as a nucleophile OH- behaves as a base (accepting a proton) 50 : 50 mixture of water -
Chapter 1 the Allylic Trihaloacetimidate
c01.tex 7/18/05 12:41 PM Page 1 CHAPTER 1 THE ALLYLIC TRIHALOACETIMIDATE REARRANGEMENT LARRY E. OVERMAN University of California, Irvine, Irvine, California 92697 NANCY E. CARPENTER University of Minnesota, Morris, Morris, Minnesota 56267 CONTENTS PAGE ACKNOWLEDGMENTS . 3 INTRODUCTION . 3 MECHANISM . 4 Thermal Rearrangements . 4 Metal-Catalyzed Rearrangements . 6 SCOPE & LIMITATIONS . 9 Preparation and Stability of Allylic Trihaloacetimidates . 9 Preparation of Allylic Trichloroacetimidates . 9 Preparation of Allylic Trifluoroacetimidates . 10 Stability of Allylic Trihaloacetimidates . 11 Thermal Rearrangements of Allylic Trihaloacetimidates . 12 Reaction Conditions:Temperature, Solvent, and Additives . 12 Scope . 14 The Halogen Substituents . 15 Carbon Skeleton . 16 Cyclic Substrates . 18 Substituent Effects and Problematic Substituents . 20 Regioselectivity . 22 Stereochemistry . 22 Chiral Secondary Imidates: Chirality Transfer . 22 Diastereoselectivity Arising from Stereocenters Outside the Pericyclic Arena . 23 Geometry of the New Double Bond . 24 Catalyzed Rearrangements of Allylic Trihaloacetimidates . 25 General Conditions . 26 Scope . 27 Stereoselectivity . 29 [email protected] [email protected] Organic Reactions, Vol. 66, Edited by Larry E. Overman et al. © 2005 Organic Reactions, Inc. Published by John Wiley & Sons, Inc. 1 c01.tex 7/18/05 12:41 PM Page 2 2 ORGANIC REACTIONS Chiral Secondary Imidates:Chirality Transfer . 29 Chiral Primary Imidates:Diastereoselectivity . 29 Asymmetric Catalysis . 31 APPLICATIONS TO SYNTHESIS . 33 Overview . 33 Preparation of Allylic Amines . 33 Other Direct Uses of Allylic Trihaloacetamides . 38 Applications in the Total Synthesis of Natural Products . 39 (Ϯ)-Acivicin . 39 (ϩ)-Lactacystin . 40 (Ϯ)-Pancratistatin . 40 COMPARISON WITH OTHER METHODS . 41 Other Allylic Rearrangements . 41 Other Routes to Allylic Amines . 43 Amination of Allylic Electrophiles . 43 C-H Activation . -
Organic Chemistry-II (Reaction Mechanism-1) MODULE No
____________________________________________________________________________________________________ Subject Chemistry Paper No and Title Paper 5: Organic Chemistry-II (Reaction Mechanism-I) Module No and Title Module 1: Types of Organic Reactions Module Tag CHE_P5_M1_e-Text CHEMISTRY PAPER No. 5: Organic Chemistry-II (Reaction Mechanism-1) MODULE No. 1: Types of Organic Reactions ____________________________________________________________________________________________________ TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction 3. Types of Organic Reactions 3.1 Substitution Reactions 3.2 Addition Reactions 3.3 Elimination Reactions 3.4. Rearrangement Reactions 3.5 Oxidation and Reduction Reactions 4. Summary CHEMISTRY PAPER No. 5: Organic Chemistry-II (Reaction Mechanism-1) MODULE No. 1: Types of Organic Reactions ____________________________________________________________________________________________________ 1. Learning Outcomes After studying this module, you shall be able to • Know the various types of organic reactions • Learn the difference between each type of reaction • Identify the reaction types depending upon reactants and conditions • Analyze organic reactions 2. Introduction An organic reaction is a change in structure or functional group leading to formation of a new substance. The compound undergoing a change in structure or functional group is called a reactant or substrate. The knowledge of organic reactions helps in the synthesis of useful chemical compounds such as polymers, dyes, drugs, perfumes, cosmetics, -
Radical Pathway for Reductive Dehalogenation and Nucleophilic Substitution of Hetaryl Halides
A RADICAL PATHWAY FOR REDUCTIVE DEHALOGENATION AND NUCLEOPHILIC SUBSTITUTION OF HETARYL HALIDES By TERENCE MILLER OESTREICH A DISSERTATION PRESENTED TO THE GRADUATE COUNCIL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1973 To My Wife, Martha ACKNOWLEDGEMENT The author will always be indebted to Dr. John A. Zoltewicz, Chairman of his Supervisory Committee, for his perceptive guidance and patient support during the course of this research. Appreciation is also extended to the other members of his Committee: Dr. Merle A. Battiste, Dr. Richard D. Dresdner, Dr. Paul Tarrant, and Dr. Robert B. Bennett. Special gratitude is due his wife, Martha, for her unfailing support and understanding during the disap- pointments and achievements of these years. The friendship and assistance of other members of his research group will always be remembered. Thanks are extended to his wife, Martha, and Mrs. Judi Nielsen for their help in preparing the manuscript, Financial support from the Chemistry Department of the University of Florida and from the National Science Foundation is gratefully acknowledged. TABLE OF CONTENTS Page ACKNOWLEDGEMENT iii LIST OF TABLES vi LIST OF FIGURES viii ABSTRACT xi CHAPTER 1 INTRODUCTION 1 2. ALKOXIDE ION PROMOTED REDUCTIVE DEHALOGENATION OF HETARYL HAL IDES 5 Results 5 Discussion 37 3. ALKOXIDE ION PROMOTED NUCLEOPHILIC SUBSTITUTION OF HETARYL HALIDES 52 Results 52 Discussion 80 4. AMIDE ION PROMOTED NUCLEOPHILIC SUBSTITUTION OF 4-HALOISOQUINOLINES 91 Results 91 Discussion 104 5. COVALENT AMINATION AND ANIONIC SIGMA COMPLEXES OF ISOQUINOLINE DERIVATIVES 110 Results 110 Discussion 118 6. -
Free Radical and Ionic Reactions of (Benzoylmethyl)Mercurials Shekhar V
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1991 Free radical and ionic reactions of (Benzoylmethyl)mercurials Shekhar V. Kulkarni Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Kulkarni, Shekhar V., "Free radical and ionic reactions of (Benzoylmethyl)mercurials " (1991). Retrospective Theses and Dissertations. 10048. https://lib.dr.iastate.edu/rtd/10048 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfihn master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps. -
Toward a Symphony of Reactivity: Cascades Involving Catalysis and Sigmatropic Rearrangements
NIH Public Access Author Manuscript Angew Chem Int Ed Engl. Author manuscript; available in PMC 2014 May 22. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Angew Chem Int Ed Engl. 2014 March 3; 53(10): 2556–2591. doi:10.1002/anie.201302572. Toward a Symphony of Reactivity: Cascades Involving Catalysis and Sigmatropic Rearrangements Amanda C. Jones*, Chemistry Department, Wake Forest University Box 7486, Winston Salem, NC 27109 (USA) Jeremy A. May, Department of Chemistry, University of Houston Houston, TX 77204-5003 (USA) Richmond Sarpong, and Department of Chemistry, University of California Berkeley, CA 94720 (USA) Brian M. Stoltz Department of Chemistry and Chemical Engineering, California Institute of Technology MC 101-20, Pasadena CA 91125 (USA) [email protected] Abstract Catalysis and synthesis are intimately linked in modern organic chemistry. The synthesis of complex molecules is an ever evolving area of science. In many regards, the inherent beauty associated with a synthetic sequence can be linked to a certain combination of the creativity with which a sequence is designed and the overall efficiency with which the ultimate process is performed. In synthesis, as in other endeavors, beauty is very much in the eyes of the beholder.[**] It is with this in mind that we will attempt to review an area of synthesis that has fascinated us and that we find extraordinarily beautiful, namely the combination of catalysis and sigmatropic rearrangements in consecutive and cascade sequences. Keywords homogeneous catalysis; sigmatropic reactions; tandem reactions 1. Introduction The development of tandem processes has had a profound impact on organic synthesis and synthetic planning. -
Organic Chemistry (Hons.)
ORGANIC CHEMISTRY SYLLABUS CHEMISTRY HONS. DEPARTMENT OF CHEMISTRY ST. XAVIER ’S COLLEGE (A UTONOMOUS ) KOLKATA -700 016 Semester-I (36-38 Lectures) A) General Introduction and Bonding Features in Organic Molecules (12 lectures) IUPAC and trivial names, DBE, Hybridization, formation of σ and π-bonds, p π-d π bonds, bond distance, bond angles, shapes of molecules, strain due to valence shell electron pair repulsion, bond stretching, angular distortion, steric effects, inductive effects, bond energy, bond polarity & bond polarizability. Resonance, Steric inhibition of resonance, hyperconjugation, bond moment, dipole moment, orbital pictures of ethylene, acetylene, allene, formaldehyde and carbene. π - orbital pictures of dienes, enynes, enones, vinylcyanide; π- MO diagrams of butadiene, 1,3,5-hexatriene, benzene: HOMO & LUMO in the g.s & e.s; Aromaticity, Huckel’s (4n+2) rule, anti-aromaticity, application of Huckel’s rule to benzenoid and non- benzenoid compounds. B) Stereochemistry of Acyclic Compounds (12-13 lectures) Representation of molecules in Fischer, flying wedge, Saw-horse and Newman formulae and their inter-translations. Chirality, elements of Symmetry, simple axis,plane of symmetry, centre of symmetry, alternating axis of symmetry. Asymmetry & disymmetry, optical activity, specific rotation, molar rotation. Enantiomerism & Diastereoisomerism, Stereogenic centres, systems with chiral centres, Stereogenic centres involving C=C, C=N; D/L, R/S, E/Z, syn/ anti, cis/trans, meso/dl, threo/erythro nomenclature. Isomerism involving two like/unlike stereogenic centres (ABA and ABA types), pseudo-asymmetric centres, stereogenicity, chirotopicity, achirotopicity; C) Reaction Mechanism, Tautomerism, Organic Acid-Base Reaction & Kinetics of Organic Reactions (12-13 lectures) Bond Cleavage & Bond Formation- heterolytic & homolytic Bond Cleavage at stereogenic (single) and non-stereogenic centres, racemization, formation of racemic products.Structure, stability, formation and fates of electrophiles, nucleophiles, radicals. -
Organic Chemistry
Learn Chemistry Starter for Ten 5. Organic Chemistry Developed by Dr Kristy Turner, RSC School Teacher Fellow 2011-2012 at the University of Manchester, and Dr Catherine Smith, RSC School Teacher Fellow 2011-2012 at the University of Leicester This resource was produced as part of the National HE STEM Programme www.rsc.org/learn-chemistry Registered Charity Number 207890 5. ORGANIC CHEMISTRY 5.1 General and mechanism 5.1.1 Functional groups 5.1.2 Nomenclature 5.1.3 Formulae 5.1.4 Isomerism 5.1.5 Mechanisms and curly arrows 5.1.6 Electrophiles and nucleophiles 5.2 Alkanes and alkenes 5.2.1 Fractional distillation and cracking 5.2.2 Air pollution 5.2.3 Greenhouse effect 5.2.4 Alkanes 5.2.5 Alkanes summary 5.2.6 Free-radical mechanisms 5.2.7 Ozone layer 5.2.8 Electrophilic additions 1 5.2.9 Electrophilic additions 2 5.2.10 Isomerism 5.2.11 Polymers from alkenes 5.3 Haloalkanes and alcohols 5.3.1 Substitution reactions 5.3.2 Haloalkanes – substitution vs elimination 5.3.3 Alcohols 5.3.4 Alcohols as intermediates 5.3.5 Oxidation of alcohols 5.3.6 Biofuels 5.4 Synthetic schemes 5.4.1 Synthetic scheme 1 5.4.2 Synthetic scheme 2 5.4.3 Synthetic scheme 3 5.1.1 Functional groups In each of the speech bubbles write the general name for the functional group ringed. (In the structures below the rings are shown in a ’skeletal’ form. Where you can see a corner then there is a carbon with the appropriate number of hydrogens) 2.