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Isolation and Identification of Cold-Adapted Fungi in the Fox Permafrost Tunnel, Alaska Mark P. Waldrop United States Geological Survey, Geologic Division, Menlo Park, CA, USA Richard White III United States Geological Survey, Geologic Division, Menlo Park, CA, USA Thomas A. Douglas Cold Regions Research and Engineering Laboratory, Fort Wainwright, AK, USA Abstract Permafrost microbiology is important for understanding biogeochemical processes, paleoecology, and life in extreme environments. Within the Fox, Alaska, permafrost tunnel, fungi grow on tunnel walls despite below freezing (-3°C) temperatures for the past 15,000 years. We collected fungal mycelia from ice, Pleistocene roots, and frozen loess. We identified the fungi by PCR, amplifying the ITS region of rRNA and searching for related sequences. The fungi within the tunnel were predominantly one genus, Geomyces, a cold-adapted fungi, and has likely “contaminated” the permafrost tunnel from outside. We were unable to obtain DNA or fungal isolates from the frozen loess, indicating fungal survival in permafrost soils can be strongly restricted. Geomyces can degrade complex carbon compounds, but we are unable to determine whether this is occurring. Results from this study suggest Geomyces may be an important colonizer species of other permafrost environments. Keywords: Fox tunnel; fungi; Geomyces; ice wedge; loess; permafrost. Introduction starts to melt and then sublimate. Therefore, when a hole is drilled, moisture is liberated, and fungal growth at these sites The permafrost tunnel near Fox, Alaska, was constructed should be possible. in the early 1960s to examine mining, tunneling, and Our research objective was to determine the identity of the construction techniques in permafrost. -
<I>Geomyces Destructans</I> Sp. Nov. Associated with Bat White-Nose
MYCOTAXON Volume 108, pp. 147–154 April–June 2009 Geomyces destructans sp. nov. associated with bat white-nose syndrome A. Gargas1, M.T. Trest2, M. Christensen3 T.J. Volk4 & D.S. Blehert5* [email protected] Symbiology LLC Middleton, WI 53562 USA [email protected] Department of Botany, University of Wisconsin — Madison Birge Hall, 430 Lincoln Drive, Madison, WI 53706 USA [email protected] 1713 Frisch Road, Madison, WI 53711 USA [email protected] Department of Biology, University of Wisconsin — La Crosse 3024 Crowley Hall, La Crosse, WI 54601 USA [email protected] U.S. Geological Survey — National Wildlife Health Center 6006 Schroeder Road, Madison, WI 53711 USA Abstract — We describe and illustrate the new species Geomyces destructans. Bats infected with this fungus present with powdery conidia and hyphae on their muzzles, wing membranes, and/or pinnae, leading to description of the accompanying disease as white-nose syndrome, a cause of widespread mortality among hibernating bats in the northeastern US. Based on rRNA gene sequence (ITS and SSU) characters the fungus is placed in the genus Geomyces, yet its distinctive asymmetrically curved conidia are unlike those of any described Geomyces species. Key words — Ascomycota, Helotiales, Pseudogymnoascus, psychrophilic, systematics Introduction Bat white-nose syndrome (WNS) was first documented in a photograph taken at Howes Cave, 52 km west of Albany, NY USA during winter, 2006 (Blehert et al. 2009). As of March 2009, WNS has been confirmed by gross and histologic examination of bats at caves and mines in Massachusetts, New Jersey, Vermont, West Virginia, New Hampshire, Connecticut, Virginia, and Pennsylvania. -
25 Chrysosporium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Universidade do Minho: RepositoriUM 25 Chrysosporium Dongyou Liu and R.R.M. Paterson contents 25.1 Introduction ..................................................................................................................................................................... 197 25.1.1 Classification and Morphology ............................................................................................................................ 197 25.1.2 Clinical Features .................................................................................................................................................. 198 25.1.3 Diagnosis ............................................................................................................................................................. 199 25.2 Methods ........................................................................................................................................................................... 199 25.2.1 Sample Preparation .............................................................................................................................................. 199 25.2.2 Detection Procedures ........................................................................................................................................... 199 25.3 Conclusion .......................................................................................................................................................................200 -
Microscopic Fungi Isolated from the Domica Cave System (Slovak Karst National Park, Slovakia)
International Journal of Speleology 38 (1) 71-82 Bologna (Italy) January 2009 Available online at www.ijs.speleo.it International Journal of Speleology Official Journal of Union Internationale de Spéléologie Microscopic fungi isolated from the Domica Cave system (Slovak Karst National Park, Slovakia). A review Alena Nováková1 Abstract: Novakova A. 2009. Microscopic fungi isolated from the Domica Cave system (Slovak Karst National Park, Slovakia). A review. International Journal of Speleology, 38 (1), 71-82. Bologna (Italy). ISSN 0392-6672. A broad spectrum, total of 195 microfungal taxa, were isolated from various cave substrates (cave air, cave sediments, bat droppings and/or guano, earthworm casts, isopods and diplopods faeces, mammalian dung, cadavers, vermiculations, insect bodies, plant material, etc.) from the cave system of the Domica Cave (Slovak Karst National Park, Slovakia) using dilution, direct and gravity settling culture plate methods and several isolation media. Penicillium glandicola, Trichoderma polysporum, Oidiodendron cerealis, Mucor spp., Talaromyces flavus and species of the genus Doratomyces were isolated frequently during our study. Estimated microfungal species diversity was compared with literature records from the same substrates published in the past. Keywords: Domica Cave system, microfungi, air, sediments, bat guano, invertebrate traces, dung, vermiculations, cadavers Received 29 April 2008; Revised 15 September 2008; Accepted 15 September 2008 INTRODUCTION the obtained microfungal spectrum with records of Microscopic fungi are an important part of cave previously published data from the Baradla Cave and microflora and occur in various substrates in caves, other caves in the world. such as cave sediments, vermiculations, bat droppings and/or guano, decaying organic material, etc. Their DESCRIPTION OF STUDIED CAVES widespread distribution contributes to their important The Domica Cave system is located on the south- role in the feeding strategies of cave fauna. -
Biosafety Measures for Working with Pseudogymnoascus Destructans in the Laboratory and Use Or Storage of Potentially Contaminated Materials
Biosafety Measures for Working with Pseudogymnoascus destructans in the Laboratory and Use or Storage of Potentially Contaminated Materials The emergent disease of bats, white-nose syndrome (WNS), has caused one of the most precipitous declines documented among North American wildlife. This disease is caused by the recently described fungal pathogen Pseudogymnoascus (formerly Geomyces) destructans. Because of the grave threat this fungus presents to populations of hibernating bats, precautions must be taken when working with P. destructans in the laboratory to prevent accidental release of the fungus into the environment. The following guidelines apply to all members of the WNS Diagnostic Laboratory Network. Other laboratories that work with P. destructans or that maintain specimens that may harbor viable fungus may use these guidelines to develop appropriate institutional standards for preventing accidental release of a Biosafety Level-2 (BSL-2) fungal pathogen of animals. Based upon biological risk assessment, work in the laboratory with viable P. destructans should be restricted to BSL-2 or higher. Adherence to this guidance will ensure that in accordance with the manual Biosafety in Microbiological and Biomedical Laboratories (BMBL) 5th Edition, appropriate procedures, mechanical controls, and containment equipment are in place to facilitate biosecure work with the fungus and to prevent accidental release. Use of a biosafety cabinet. Fungi such as P. destructans readily produce aerosolizeable, environmentally resistant, and long-lived spores (reproductive structures). Therefore, all manipulations of potentially viable P. destructans (fungal cultures, carcasses, unfixed tissue samples, wing swabs, environmental samples, fungal tape lifts) in the laboratory should be restricted to a certified Class I or Class II biosafety cabinet. -
25 Chrysosporium
25 Chrysosporium Dongyou Liu and R.R.M. Paterson contents 25.1 Introduction ..................................................................................................................................................................... 197 25.1.1 Classification and Morphology ............................................................................................................................ 197 25.1.2 Clinical Features .................................................................................................................................................. 198 25.1.3 Diagnosis ............................................................................................................................................................. 199 25.2 Methods ........................................................................................................................................................................... 199 25.2.1 Sample Preparation .............................................................................................................................................. 199 25.2.2 Detection Procedures ........................................................................................................................................... 199 25.3 Conclusion .......................................................................................................................................................................200 References .................................................................................................................................................................................200 -
Real-Time PCR for Geomyces Destructans Bat White-Nose Syndrome
In Press at Mycologia, preliminary version published on September 6, 2012 as doi:10.3852/12-242 Short title: Real-time PCR for Geomyces destructans Bat white-nose syndrome: a real-time TaqMan polymerase chain reaction test targeting the intergenic spacer region of Geomyces destructans Laura K. Muller US Geological Survey. National Wildlife Health Center, 6006 Schroeder Road, Madison, Wisconsin 53711 Jeffrey M. Lorch Molecular and Environmental Toxicology Center, University of Wisconsin at Madison, Medical Sciences Center, 1300 University Avenue, Madison, Wisconsin 53706 Daniel L. Lindner1 US Forest Service, Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 Michael O’Connor1 Wisconsin Veterinary Diagnostic Laboratory, 445 Easterday Lane, Madison, Wisconsin 53706 Andrea Gargas Symbiology LLC, Middleton, Wisconsin 53562 USA David S. Blehert2 US Geological Survey, National Wildlife Health Center, 6006 Schroeder Road, Madison, Wisconsin 53711 Copyright 2012 by The Mycological Society of America. Abstract: The fungus Geomyces destructans is the causative agent of white-nose syndrome (WNS), a disease that has killed millions of North American hibernating bats. We describe a real-time TaqMan PCR test that detects DNA from G. destructans by targeting a portion of the multicopy intergenic spacer region of the rRNA gene complex. The test is highly sensitive, consistently detecting as little as 3.3 fg genomic DNA from G. destructans. The real-time PCR test specifically amplified genomic DNA from G. destructans but did not amplify target sequence from 54 closely related fungal isolates (including 43 Geomyces spp. isolates) associated with bats. The test was qualified further by analyzing DNA extracted from 91 bat wing skin samples, and PCR results matched histopathology findings. -
Curriculum Vitae (PDF)
CURRICULUM VITAE Steven J. Taylor April 2020 Colorado Springs, Colorado 80903 [email protected] Cell: 217-714-2871 EDUCATION: Ph.D. in Zoology May 1996. Department of Zoology, Southern Illinois University, Carbondale, Illinois; Dr. J. E. McPherson, Chair. M.S. in Biology August 1987. Department of Biology, Texas A&M University, College Station, Texas; Dr. Merrill H. Sweet, Chair. B.A. with Distinction in Biology 1983. Hendrix College, Conway, Arkansas. PROFESSIONAL AFFILIATIONS: • Associate Research Professor, Colorado College (Fall 2017 – April 2020) • Research Associate, Zoology Department, Denver Museum of Nature & Science (January 1, 2018 – December 31, 2020) • Research Affiliate, Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign (16 February 2018 – present) • Department of Entomology, University of Illinois at Urbana-Champaign (2005 – present) • Department of Animal Biology, University of Illinois at Urbana-Champaign (March 2016 – July 2017) • Program in Ecology, Evolution, and Conservation Biology (PEEC), School of Integrative Biology, University of Illinois at Urbana-Champaign (December 2011 – July 2017) • Department of Zoology, Southern Illinois University at Carbondale (2005 – July 2017) • Department of Natural Resources and Environmental Sciences, University of Illinois at Urbana- Champaign (2004 – 2007) PEER REVIEWED PUBLICATIONS: Swanson, D.R., S.W. Heads, S.J. Taylor, and Y. Wang. A new remarkably preserved fossil assassin bug (Insecta: Heteroptera: Reduviidae) from the Eocene Green River Formation of Colorado. Palaeontology or Papers in Palaeontology (Submitted 13 February 2020) Cable, A.B., J.M. O’Keefe, J.L. Deppe, T.C. Hohoff, S.J. Taylor, M.A. Davis. Habitat suitability and connectivity modeling reveal priority areas for Indiana bat (Myotis sodalis) conservation in a complex habitat mosaic. -
Beneficial Forest Mgmt. Practices for WNS Affected Bats
Beneficial Forest Management Practices for WNS-affected Bats Voluntary Guidance for Land Managers and Woodland Owners in the Eastern United States May 2018 Please cite this document as: Johnson, C.M. and R.A. King, eds. 2018. Beneficial Forest Management Practices for WNS-affected Bats: Voluntary Guidance for Land Managers and Woodland Owners in the Eastern United States. A product of the White-nose Syndrome Conservation and Recovery Working Group established by the White-nose Syndrome National Plan (www.whitenosesyndrome.org). 39 pp. BACKGROUND This document was prepared and reviewed by a diverse group of volunteers from universities, federal and state agencies, and non-governmental organizations functioning as a subgroup of the Conservation and Recovery Working Group (CRWG), which was established via A National Plan for Assisting States, Federal Agencies, and Tribes in Managing White-Nose Syndrome in Bats (a.k.a. the “National Plan”; USFWS 2011a (available at www.whitenosesyndrome.org). The need for beneficial forest management practices (BFMPs) for bats and forest management was identified by the CRWG and conceptualized during the 2013 White-Nose Syndrome Workshop held in Boise, Idaho. This document contains detailed information, including a glossary of bat and forest management- related terms (defined terms are underlined and are linked to the glossary) and citations for pertinent scientific literature to help land managers and others interested in gaining a deeper understanding of the underlying science and related issues that were considered when developing the BFMPs. An abbreviated and condensed version of these BFMPs is being planned and will be available as a user-friendly brochure at https://www.whitenosesyndrome.org when completed. -
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Title Antimicrobial activities and diversity of sponge derived microbes Author(s) Flemer, Burkhardt Publication date 2013 Original citation Flemer, B. 2013. Antimicrobial activities and diversity of sponge derived microbes. PhD Thesis, University College Cork. Type of publication Doctoral thesis Rights © 2013, Burkhardt Flemer http://creativecommons.org/licenses/by-nc-nd/3.0/ Embargo information No embargo required Item downloaded http://hdl.handle.net/10468/1192 from Downloaded on 2017-02-12T12:58:08Z University College Cork Coláiste na hOllscoile Corcaigh Antimicrobial activities and diversity of sponge derived microbes A thesis presented to the National University of Ireland for the degree of Doctor of Philosophy Burkhardt Flemer, Dipl. Ing. (FH) National University of Ireland, Cork Department of Microbiology January 2013 Head of Department: Professor Gerald F. Fitzgerald Supervisors: Professor Alan Dobson, Professor Fergal O’Gara This thesis is dedicated to my family, my inspiration DECLARATION 4 ABSTRACT 5 CHAPTER 1 8 INTRODUCTION BODY PLAN OF MARINE SPONGES 9 Demosponges 9 MICROBIAL SPONGE ASSOCIATES 10 HIGHTHROUGHPUT SEQUENCING AS A TOOL TO ESTIMATE SPONGE- 16 ASSOCIATED MICROBIOTA Studies employing pyrosequencing for the analysis of sponge-associated 17 microbiota ESTABLISHMENT AND MAINTENANCE OF SPONGE MICROBE 21 INTERACTIONS SYMBIONT FUNCTION 22 Carbon metabolism 23 Nitrogen metabolism 23 Sulphur metabolism 25 SPONGE ASSOCIATED FUNGI 26 DEEP SEA SPONGES 28 SECONDARY METABOLITES FROM MARINE SPONGES AND SPONGE 29 DERIVED MICROBES Potential of sponge-ass. MO for the production of bioactive metabolites 30 Bioactive natural products from marine sponges 32 POLYKETIDE SYNTHASES (PKS) AND NON RIBOSOMAL PEPTIDE 33 SYNTHASES (NRPS) NRPSs 33 PKSs 34 AIMS AND OVERVIEW OF THE PRESENTED STUDY 36 REFERENCES 36 CHAPTER 2 54 DIVERSITY AND ANTIMICROBIAL ACTIVITIES OF MICROBES FROM TWO IRISH MARINE SPONGES, SUBERITES CARNOSUS AND LEUCOSOLENIA SP. -
Cladosporium Mold
GuideClassification to Common Mold Types Hazard Class A: includes fungi or their metabolic products that are highly hazardous to health. These fungi or metabolites should not be present in occupied dwellings. Presence of these fungi in occupied buildings requires immediate attention. Hazard class B: includes those fungi which may cause allergic reactions to occupants if present indoors over a long period. Hazard Class C: includes fungi not known to be a hazard to health. Growth of these fungi indoors, however, may cause eco- nomic damage and therefore should not be allowed. Molds commonly found in kitchens and bathrooms: • Cladosporium cladosporioides (hazard class B) • Cladosporium sphaerospermum (hazard class C) • Ulocladium botrytis (hazard class C) • Chaetomium globosum (hazard class C) • Aspergillus fumigatus (hazard class A) Molds commonly found on wallpapers: • Cladosporium sphaerospermum • Chaetomium spp., particularly Chaetomium globosum • Doratomyces spp (no information on hazard classification) • Fusarium spp (hazard class A) • Stachybotrys chartarum, commonly called ‘black mold‘ (hazard class A) • Trichoderma spp (hazard class B) • Scopulariopsis spp (hazard class B) Molds commonly found on mattresses and carpets: • Penicillium spp., especially Penicillium chrysogenum (hazard class B) and Penicillium aurantiogriseum (hazard class B) • Aspergillus versicolor (hazard class A) • Aureobasidium pullulans (hazard class B) • Aspergillus repens (no information on hazard classification) • Wallemia sebi (hazard class C) • Chaetomium -
Managing the Spread of Pseudogymnoascus Destructans and Conserving Bats Threatened by White-Nose Syndrome in North America
Program and Abstracts—21st National Cave and Karst Management Symposium Managing the spread of Pseudogymnoascus Destructans and conserving Bats threatened by White-Nose Syndrome in North America Jeremy T. H. Coleman1, Jonathan D. Reichard1, Richard Geboy2, Christopher Servheen3*, Christina Kocer1, and Mike Armstrong4 U.S. Fish and Wildlife Service: 1 Hadley, Massachusetts; 2Bloomington, Indiana; 3 Missoula, Montana; 4Frankfort, Kentucky Bats in North America face numerous durations in the absence of bat hosts (Lorch challenges, including habitat loss, climate et al. 2013, Hoyt et al. 2014), and conspicu- change, environmental contamination, and ous longer distance jumps to heavily visited energy development, but none is as immediate caves before detection at large bat hibernac- a threat to multiple species as white-nose syn- ula close by. The fungus infects torpid bats drome, a fungal disease that is responsible for resulting in physiological and behavioral unparalleled rapid declines in bat populations. impacts, often leading to mortality. Popula- White-nose syndrome (WNS) was unknown tion declines exceeding 90% have been doc- to science before discovery in New York in umented in affected hibernacula during win- January 2007 (Blehert et al. 2009). Since that ter surveys (Turner et al. 2011), and corrob- time the disease has spread to at least 26 states orated by estimates of colony size and activ- and five Canadian provinces, and the fungus ity during summer. The international re- causing the disease, Pseudogymnoascus de- sponse to the disease has been rapid, and structans (Pd, Lorch et al. 2011), has been has resulted in considerable advances in our documented in three additional states: Minne- understanding of the pathogen and the dis- sota, Mississippi, and Oklahoma (see current ease to the extent that we are beginning to map: www.WhiteNoseSyndrome.org).