Research Article Enzymatic Extraction, Purification, and Characterization of Polysaccharides from Penthorum Chinense Pursh: Natural Antioxidant and Anti-Inflammatory

Total Page:16

File Type:pdf, Size:1020Kb

Research Article Enzymatic Extraction, Purification, and Characterization of Polysaccharides from Penthorum Chinense Pursh: Natural Antioxidant and Anti-Inflammatory Hindawi BioMed Research International Volume 2018, Article ID 3486864, 13 pages https://doi.org/10.1155/2018/3486864 Research Article Enzymatic Extraction, Purification, and Characterization of Polysaccharides from Penthorum chinense Pursh: Natural Antioxidant and Anti-Inflammatory Li-mei Lin ,1,2 Ling-jia Zhao ,1,2 Jing Deng,1,2 Su-hui Xiong ,1,2 Jie Tang,1,2 Ya-mei Li,1,2 Bo-hou Xia ,1,2 and Duan-fang Liao1,2 College of Pharmacy, Hunan University of Chinese Medicine, Changsha , China Collaborative Innovation Center for the Protection and Utilization of Chinese Herbal Medicine Resources in Hunan Province, Hunan University of Chinese Medicine, Changsha , China Correspondence should be addressed to Bo-hou Xia; [email protected] Received 26 August 2018; Accepted 8 November 2018; Published 27 November 2018 Academic Editor: Jane Hanrahan Copyright © 2018 Li-mei Lin et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Penthorum chinense Pursh (PCP) is a kind of functional food or medicine for liver protection. In the present work, Plackett-Burman design, steepest ascent method, and response surface methodology (RSM) were employed to obtain maximum total sugar yield. Te experimental yield of 6.91% indicated a close agreement with the predicted yield of 7.00% of the model under optimized conditions. Te major polysaccharide fraction (PCPP-1a) from PCPP was purifed and identifed as acidic polysaccharides with a high content of uronic acid (FT-IR, UV, HPGPC). PCPP had similar monosaccharide profle with PCPP-1a but was rich in galacturonic acid 2+ (HPLC). Both of PCPP and PCPP-1a possessed strong hydroxyl radical scavenging, DPPH radical scavenging, and Fe chelating activities. Moreover, they were revealed to show strong anti-infammatory activities by inhibiting NO, TNF-�,andIL-1� release compared to LPS treatment in RAW264.7 cells. Tese data suggest that the polysaccharides from PCP could be potential natural products for treating ROS and infammatory-related diseases. 1. Introduction that PCP exhibited antioxidant, hypoglycemic, antiprolif- erative, and anticomplement activities [19–22]. According Polysaccharide, a crucial biomacromolecule in living organ- to the preparation process of previous studies, the water- isms, is one of the most abundant storage carbohydrates solubleconstituentswerethemainfocus[23].Amongthem, of plants [1]. Botanical polysaccharides were involved in favonoids, favonoid glycosides, and other phenolic contents multiple bioactivities such as antioxidation, immunomodula- accounted for the major constituents [19, 22, 24]. Unfor- tion, antidiabetic, and anticancer [2–5]. Moreover, botanical tunately, studies on the extraction, characterization, and polysaccharides have attracted increasing attention for their bioactivities of Penthorum chinense Pursh polysaccharides health-related benefts and therapeutic use with relatively high security [6, 7]. Terefore, they have immense potential (PCPP) are limited. industrial applications in pharmaceuticals [8], cosmetics [9], Accordingly, this study was frst designed to optimize foods [10], and materials [11]. the extraction process of PCPP using design of experiment Penthorum chinense Pursh (PCP, Saxifragaceae) mostly (DOE). Te crude PCPP was then purifed by DEAE-52 distributed in China (Miao ethnomedicine), eastern Russia, cellulose and Sephadex G-150. Moreover, chemical analysis Japan, and Korea [12–16]. It has been used traditionally as (HPLC, HPGPC, and FT-IR), antioxidant activities, and anti- functional food or traditional Chinese medicine for treating infammatory efects of PCPP and its purifed fractions were liver disease [17, 18]. Recently, several studies indicated further characterized. 2 BioMed Research International Table 1: Experimental feld defnition for the Plackett-Burman design. Experimental values Symbol code Factors Low level (-) High level (+) ∘ X1 ( C) Extraction temperature 30 60 X2 (min) Extraction Time 10 30 X3 (ml/g) Liquid-to-solid ratio 10 30 X4 (W) Ultrasonic power 200 400 X5 (%) Enzyme concentration 2 4 X6 pH 4 5 2. Materials and Methods the signifcant factors from a multivariable system and considerably diminishes the number of experiments [26]. .. Materials. PCP was acquired from Gaoqiao natural Tis technique has been widely used to screen the signifcant herbal special market (Changsha, China). Te dried PCP factors prior to optimization [27]. A two-level (high and low) sample was pulverized by a disintegrator (HX-200A, China) PBD was tested for 6 selected factors (Table 1). Minitab 16.0 and passed through an 80-mesh screen (Harbin Ouerfu Filter (Minitab Inc., USA) was applied to create the design matrix Material Co., Ltd., China) to obtain the fnal powder. shown in Table 2. Te yield of PCPP was analyzed in triplicate 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bro- for each test and the averages were regarded as the responses. mide (MTT), Dextrans of diferent molecular weights, 2,2- diphenyl-1-picrylhydrazyl (DPPH), and lipopolysaccharide .. Steepest Ascent Method. Steepest ascent method based (LPS) were obtained from Sigma Chemical Co. (St. Louis, on steepest ascent lines was applied to get rapidly to the MO, USA). Total antioxidant capacity assay kit (ABTS, neighborhood of the optimum. Tis way established an FRAP) was obtained from Beyotime Biotechnology (Jiangsu, efective path through the center of the design based on the China). Dulbecco’s Modifed Eagle medium (DMEM) and results from the PBD [28]. fetal bovine serum (FBS) were acquired from Gibco (Grand In the present work, tests with defned intervals for each Island,NY,USA).DEAE-52,SephadexG-150,monosaccha- response were conducted by the path of steepest ascent. Te ride standards (glucose (Glc), galactose (Gal), ribose (Rib), obtained design and results are displayed in Table 3. Once mannose (Man), glucuronic acid (GlcUA), rhamnose (Rha), there is no further achieved improvement in the response, xylose (Xyl), galacturonic acid (GalUA), arabinose (Ara), and thepointwouldbethegeneralvicinityoftheoptimumand fucose (Fuc)), and cellulase were acquired from Sinopharm could be taken as the center point of central composite design Chemical Reagent Co., Ltd. (CCD). .. Preparation of PCP and Determination of the Yield. .. Response Surface Methodology (RSM). In order to under- Afer drying to a constant weight and homogenization, PCP ∘ stand the interactions among the factors and optimize the powder was extracted three times with 80% ethanol at 60 C, extraction conditions for PCPP, RSM via central composite each for 5 h, to remove lipids, amino acids, monosaccharide, design (CCD), which includes various processes such as oligosaccharides, and some colored materials [25]. Pretreated regression analysis and factorial design was applied [29]. In samples were centrifuged (4000 rpm, 20 min), and the pow- this study, a CCD experimental plan with two variables and der was vacuum-dried to a constant weight. Each dried and three levels was utilized to get the optimal conditions for pretreated sample (5 g) was extracted by ultrasound-assisted PCPP. Te three levels of the signifcant factors (enzyme enzymatic (cellulase) extraction method at the designated concentration and liquid-to-solid ratio) were set as -1, 0, extraction conditions. Extraction conditions were controlled and 1 for high, intermediate, and low values, respectively by varying the ratio of liquid-to-solid, enzyme concentration, (�=1.414). Te experiments were executed based on the pH value, ultrasonic power, time, and temperature. Extracts matrix established by the Design-Expert sof (Version 10). were centrifuged at 5000 rpm for 10 min. Te supernatant Te design matrix with coded and actual values of the was merged and precipitated by overnight incubation with factor for 13 experiments which were constructed with 5 ethanol (80%; v/v; fnal concentration). Te precipitation central point replications is manifested in Table 4. Once the was harvested by centrifugation (5000 rpm, 20 min) and ∘ experiments had been conducted, the PCPP yield (Response lyophilized at -50 C to acquire crude polysaccharides. Te variable) was ftted with a second-order model. Te basic percentage of the yield of polysaccharides (%) was estimated form of the equation appears as follows: using the formula �(%)=�1/�0 × 100%, where Y was the � � PCPP extraction yield (%), �1 was the polysaccharides of �=� + ∑ � � + ∑ � � 2 +∑ ∑ � � � +� extraction (g), and �0 represented dried sample weight (g). 0 � � �� � �� � � (1) �=1 �=1 �=1 �=�+1 .. Plackett-Burman Screening Designs. Plackett-Burman where Y is the predicted response (PCPP yield), �0 is design (PBD) is a highly fractional design which identifes the constant term, ��, ���,and��� are the regression term BioMed Research International 3 Table 2: Te Placket-Burman design variables (in coded levels) with PCPP yield as response. Variable levels Run X1 X2 X3 X4 X5 X6 Yield (%) ∘ ( C) (min) (mL/g) (W) (%) 1-1-1-1-1-1-10.97 2-111-11-12.81 3-1111-111.55 4 1 1 -1 1 -1 -1 1.35 51-11-1-1-11.91 611-111-13.02 7111-1114.23 8-1-1-11112.61 9 -1 1 -1 -1 -1 1 0.64 10 1-1-1-1112.75 11 -1 -1 1 1 1 -1 4.23 12 1 -1 1 1 -1 1 2.17 Efect 0.4353 -0.1729 0.9265 0.2737 1.8454 -0.0567 Coefcient 0.2177 -0.0865 0.4633 0.1368 0.9227 -0.0283 t-Value 1.70 -0.68 3.62 1.07 7.22 -0.22 p-value 0.149 0.529 0.015∗ 0.333 0.001∗ 0.833 2 2 Press = 5.65, R = 0.9332, and adj-R =0.8530.∗Identifed
Recommended publications
  • Anatomy and Affinities of Penthorum Melanie Lynn Haskins
    University of Richmond UR Scholarship Repository Biology Faculty Publications Biology 2-1987 Anatomy and Affinities of Penthorum Melanie Lynn Haskins W. John Hayden University of Richmond, [email protected] Follow this and additional works at: http://scholarship.richmond.edu/biology-faculty-publications Part of the Botany Commons, Other Plant Sciences Commons, and the Plant Biology Commons Recommended Citation Haskins, Melanie Lynn, and W. John Hayden. "Anatomy and Affinities of Penthorum." American Journal of Botany 74, no. 2 (February 1987): 164-77. This Article is brought to you for free and open access by the Biology at UR Scholarship Repository. It has been accepted for inclusion in Biology Faculty Publications by an authorized administrator of UR Scholarship Repository. For more information, please contact [email protected]. Amer. J. Bot. 74(2): 164-177. 1987. ANATOMY AND AFFINITIES OF PENTHORUM' MELANIE L. HASKINS AND W. JOHN HAYDEN Department of Biology, University of Richmond, Richmond, Virginia 23173 ABSTRACT The genus Penthorum L. consists of two species of perennial herbs, P. sedoides of eastern North America and P. chinense ofeastern Asia. Pentho rum has long been considered intermediate between Crassulaceae and Saxifragaceae. An anatomical study of both species was undertaken to contribute to a better understanding of the relationships ofthese plants. Prominent anatomical features of Penthorum include: an aerenchymatous cortex and closely-spaced collateral vascular bundles of stems; one-trace unilacunar nodes; brochidodromous venation, rosoid teeth bearing hydathodes, and anomocytic stomata of leaves; angular vessel elements with many-barred scalariform perforation plates and alternate to scattered intervascular pits; thin-walled non­ septate fiber-tracheids; abundant homocellular erect uniseriate and biseriate rays; and absence of axial xylem parenchyma.
    [Show full text]
  • Antioxidant and Hepatoprotective Effect of Penthorum Chinense Pursh Extract Against T-BHP-Induced Liver Damage in L02 Cells
    Molecules 2015, 20, 6443-6453; doi:10.3390/molecules20046443 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Article Antioxidant and Hepatoprotective Effect of Penthorum chinense Pursh Extract against t-BHP-Induced Liver Damage in L02 Cells Yangyang Hu †, Shengpeng Wang †, Anqi Wang, Ligen Lin, Meiwan Chen * and Yitao Wang * State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau 999078, China; E-Mails: [email protected] (Y.H.); [email protected] (S.W.); [email protected] (A.W.); [email protected] (L.L.) † These authors contributed equally to this work. * Authors to whom correspondence should be addressed; E-Mails: [email protected] (M.C.); [email protected] (Y.W.); Tel.: +853-8822-4675 (M.C.); +853-8822-4691 (Y.W.); Fax: +853-2884-1358 (M.C. & Y.W.). Academic Editor: Derek J. McPhee Received: 13 February 2015 / Accepted: 26 March 2015 / Published: 10 April 2015 Abstract: Penthorum chinense Pursh (P. chinense), a traditional Chinese medicine used by the Chinese Miao minority, has been used to treat liver diseases for a long time. However, the mechanism behind the liver protective effects of P. chinense remains unclear so far. The aim of the present study was to investigate the hepatoprotective effect of P. chinense and its possible mechanism(s). Immortalized normal human normal liver L02 cells were used to evaluate the protective effect of P. chinense aqueous extract against tert-butyl hydroperoxide (t-BHP)-induced liver cell damage. Treatment with P. chinense aqueous extract significantly protected L02 cells from t-BHP-induced cytotoxicity, prevented t-BHP-induced reactive oxygen species (ROS) generation and decreased the percentage of apoptosis by inhibiting the mitochondrial apoptotic pathway.
    [Show full text]
  • Redalyc.Genetic Analysis of Penthorum Chinense Pursh By
    Electronic Journal of Biotechnology E-ISSN: 0717-3458 [email protected] Pontificia Universidad Católica de Valparaíso Chile Mei, Zhiqiang; Zhang, Xianqin; Khan, Md. Asaduzzaman; Imani, Saber; Liu, Xiaoyan; Zou, Hui; Wei, Chunli; Fu, Junjiang Genetic analysis of Penthorum chinense Pursh by improved RAPD and ISSR in China Electronic Journal of Biotechnology, vol. 30, noviembre, 2017, pp. 6-11 Pontificia Universidad Católica de Valparaíso Valparaíso, Chile Available in: http://www.redalyc.org/articulo.oa?id=173353557003 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Electronic Journal of Biotechnology 30 (2017) 6–11 Contents lists available at ScienceDirect Electronic Journal of Biotechnology Research article Genetic analysis of Penthorum chinense Pursh by improved RAPD and ISSR in China Zhiqiang Mei a,1, Xianqin Zhang a,1, Md. Asaduzzaman Khan a,SaberImania,b, Xiaoyan Liu a, Hui Zou a,c, Chunli Wei a,d, Junjiang Fu a,c,d,e,⁎ a Key Laboratory of Epigenetics and Oncology, the Research Center for Preclinical Medicine, Southwest Medical University, Luzhou, Sichuan, China b Chemical Injuries Research Center, Baqiyatallah Medical Sciences University, Tehran, Iran c Hunan Normal University Medical College, Changsha, Hunan 410081, China d State Key Laboratory of Quality Research in Chinese Medicine, Macau University of Science and Technology, Macau, China e Judicial Authentication Center, Southwest Medical University, Luzhou, Sichuan 646000, China article info abstract Article history: Background: Penthorum chinense Pursh (P. chinense) is a well-known traditional Chinese medicine (TCM) plant, Received 13 April 2017 which has long been used for the prevention and treatment of hepatic diseases.
    [Show full text]
  • Globally Important Agricultural Heritage Systems (GIAHS) Application
    Globally Important Agricultural Heritage Systems (GIAHS) Application SUMMARY INFORMATION Name/Title of the Agricultural Heritage System: Osaki Kōdo‟s Traditional Water Management System for Sustainable Paddy Agriculture Requesting Agency: Osaki Region, Miyagi Prefecture (Osaki City, Shikama Town, Kami Town, Wakuya Town, Misato Town (one city, four towns) Requesting Organization: Osaki Region Committee for the Promotion of Globally Important Agricultural Heritage Systems Members of Organization: Osaki City, Shikama Town, Kami Town, Wakuya Town, Misato Town Miyagi Prefecture Furukawa Agricultural Cooperative Association, Kami Yotsuba Agricultural Cooperative Association, Iwadeyama Agricultural Cooperative Association, Midorino Agricultural Cooperative Association, Osaki Region Water Management Council NPO Ecopal Kejonuma, NPO Kabukuri Numakko Club, NPO Society for Shinaimotsugo Conservation , NPO Tambo, Japanese Association for Wild Geese Protection Tohoku University, Miyagi University of Education, Miyagi University, Chuo University Responsible Ministry (for the Government): Ministry of Agriculture, Forestry and Fisheries The geographical coordinates are: North latitude 38°26’18”~38°55’25” and east longitude 140°42’2”~141°7’43” Accessibility of the Site to Capital City of Major Cities ○Prefectural Capital: Sendai City (closest station: JR Sendai Station) ○Access to Prefectural Capital: ・by rail (Tokyo – Sendai) JR Tohoku Super Express (Shinkansen): approximately 2 hours ※Access to requesting area: ・by rail (closest station: JR Furukawa
    [Show full text]
  • Goji Who? Morphological and DNA Based Authentication of a “Superfood”
    fpls-09-01859 December 16, 2018 Time: 13:5 # 1 ORIGINAL RESEARCH published: 18 December 2018 doi: 10.3389/fpls.2018.01859 Goji Who? Morphological and DNA Based Authentication of a “Superfood” Sascha Wetters*, Thomas Horn and Peter Nick Molecular Cell Biology, Karlsruhe Institute of Technology, Karlsruhe, Germany “Goji” (Lycium barbarum and Lycium chinense) is a generic name for medical plants with a long historical background in the traditional Chinese medicine. With the emerging trend of “Superfoods” several years ago, Goji berries soon became an established product in European countries and not only are the most popular product of traditional Chinese medicine outside of China but to this day one of the symbols of the entire “Superfood” trend. However, since Goji is an umbrella term for different plant species that are closely related, mislabeling and adulterations (unconsciously or purposely) are possible. We carefully verified the identity of Goji reference plant material based on morphological traits, mainly floral structures of several inflorescences of each individual, Edited by: Jiang Xu, in order to create a robust background for the downstream applications that were used China Academy of Chinese Medical on those reference plants and additionally on commercial Goji products. We report Sciences, China morphological and molecular based strategies for the differentiation of Lycium barbarum Reviewed by: and Lycium chinense. The two different Goji species vary significantly in seed size, Rosemary White, Commonwealth Scientific with an almost double average seed area in Lycium chinense compared to Lycium and Industrial Research Organisation barbarum. Differences could be traced on the molecular level as well; using the psbA- (CSIRO), Australia Hugo J.
    [Show full text]
  • Genetic Analysis of Penthorum Chinense Pursh by Improved RAPD and ISSR in China
    Electronic Journal of Biotechnology 30 (2017) 6–11 Contents lists available at ScienceDirect Electronic Journal of Biotechnology Research article Genetic analysis of Penthorum chinense Pursh by improved RAPD and ISSR in China Zhiqiang Mei a,1, Xianqin Zhang a,1, Md. Asaduzzaman Khan a,SaberImania,b, Xiaoyan Liu a, Hui Zou a,c, Chunli Wei a,d, Junjiang Fu a,c,d,e,⁎ a Key Laboratory of Epigenetics and Oncology, the Research Center for Preclinical Medicine, Southwest Medical University, Luzhou, Sichuan, China b Chemical Injuries Research Center, Baqiyatallah Medical Sciences University, Tehran, Iran c Hunan Normal University Medical College, Changsha, Hunan 410081, China d State Key Laboratory of Quality Research in Chinese Medicine, Macau University of Science and Technology, Macau, China e Judicial Authentication Center, Southwest Medical University, Luzhou, Sichuan 646000, China article info abstract Article history: Background: Penthorum chinense Pursh (P. chinense) is a well-known traditional Chinese medicine (TCM) plant, Received 13 April 2017 which has long been used for the prevention and treatment of hepatic diseases. This study aimed to genetically Accepted 25 August 2017 characterize the varieties of P. chinense from different geographic localities of China by random amplification of Available online 7 September 2017 polymorphic DNA (RAPD)-PCR technique and verified with inter-simple sequence repeat (ISSR) markers. Results: The P. chinense samples were collected from nine different geographic localities. Previously improved RAPD Keywords: and ISSR markers were utilized for genetic analysis using DNA amplification. The genetic relationship dendrogram Alleles fi Chinese medicine was obtained by conducting cluster analysis to the similarity coef cient of improved RAPD and ISSR markers.
    [Show full text]
  • 44965893014.Pdf
    Revista de Biología Tropical ISSN: 0034-7744 ISSN: 2215-2075 Universidad de Costa Rica Mei, Zhiqiang; Khan, Md. Asaduzzaman; Fu, Junjiang Genetic authentication of Eclipta prostrate (Asteraceae) from Penthorum chinense (Penthoraceae) by Sequence Characterized Amplified Region (SCAR) markers Revista de Biología Tropical, vol. 68, no. 1, 2020, January-March, pp. 180-188 Universidad de Costa Rica DOI: 10.15517/RBT.V68I1.37046 Available in: http://www.redalyc.org/articulo.oa?id=44965893014 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative Genetic authentication of Eclipta prostrate (Asteraceae) from Penthorum chinense (Penthoraceae) by Sequence Characterized Amplified Region (SCAR) markers Zhiqiang Mei1, Md. Asaduzzaman Khan1 & Junjiang Fu2* 1. The Research Center for Preclinical Medicine, Southwest Medical University, Luzhou, Sichuan 646000, China; [email protected], [email protected] 2. Key Laboratory of Epigenetics and Oncology, The Research Center for Preclinical Medicine, Southwest Medical University, Zhongshan Road, Luzhou, Sichuan 646000, China; [email protected], [email protected] * Correspondance Received 28-IV-2019. Corrected 14-XI-2019. Accepted 20-I-2020. ABSTRACT. Introduction: For the rapid and accurate genetic identification and authentication of living organisms, improved random amplified polymorphic DNA (RAPD) fragment based development of sequence- characterized amplified region (SCAR) markers is an important genetic technique. Objective: This study aimed to develop SCAR markers for perennial herb Eclipta prostrate (E. prostrate). Methods: Here the RAPD frag- ments by improved RAPD amplification with primers A11 and N-7 for E.
    [Show full text]
  • Genetic Authentication of Eclipta Prostrate (Asteraceae) from Penthorum Chinense (Penthoraceae) by Sequence Characterized Amplified Region (SCAR) Markers
    Genetic authentication of Eclipta prostrate (Asteraceae) from Penthorum chinense (Penthoraceae) by Sequence Characterized Amplified Region (SCAR) markers Zhiqiang Mei1, Md. Asaduzzaman Khan1 & Junjiang Fu2* 1. The Research Center for Preclinical Medicine, Southwest Medical University, Luzhou, Sichuan 646000, China; [email protected], [email protected] 2. Key Laboratory of Epigenetics and Oncology, The Research Center for Preclinical Medicine, Southwest Medical University, Zhongshan Road, Luzhou, Sichuan 646000, China; [email protected], [email protected] * Correspondance Received 28-IV-2019. Corrected 14-XI-2019. Accepted 20-I-2020. ABSTRACT. Introduction: For the rapid and accurate genetic identification and authentication of living organisms, improved random amplified polymorphic DNA (RAPD) fragment based development of sequence- characterized amplified region (SCAR) markers is an important genetic technique. Objective: This study aimed to develop SCAR markers for perennial herb Eclipta prostrate (E. prostrate). Methods: Here the RAPD frag- ments by improved RAPD amplification with primers A11 and N-7 for E. prostrate were cloned into pGEX-T vector, and PCR amplification identified the positive clones. After the enzymatic digestion, they were sequenced with Sanger sequencing. Results: Two SCAR markers were developed, which were very specific to E. prostrate, not found in Penthorum chinense Pursh (P. chinense). The nucleotide sequence search by BLAST GenBank database showed that they are novel in E. prostrate, therefore they were deposited in Genbank with accession number KX671034, KX671035. The markers did not show any identity to other species. Conclusions: Thus, in this study two specific SCAR markers were developed for genetically distinguishing and identifying the plant species E. prostrate from herb P.
    [Show full text]
  • (Saxifragaceae), Using Genome Skimming Data Luxian Liu1†, Yuewen Wang1†, Peizi He1, Pan Li2* , Joongku Lee3, Douglas E
    Liu et al. BMC Genomics (2018) 19:235 https://doi.org/10.1186/s12864-018-4633-x RESEARCHARTICLE Open Access Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data Luxian Liu1†, Yuewen Wang1†, Peizi He1, Pan Li2* , Joongku Lee3, Douglas E. Soltis4 and Chengxin Fu2 Abstract Background: Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae) have an epilithic habitat (rocky slopes) and a parapatric distribution in East Asia, which makes them an ideal model for a more comprehensive understanding of the demographic and divergence history and the influence of climate changes in East Asia. However, the genetic background and resources for these two genera are scarce. Results: The complete chloroplast (cp) genomes of two Oresitrophe rupifraga and one Mukdenia rossii individuals were reconstructed and comparative analyses were conducted to examine the evolutionary pattern of chloroplast genomes in Saxifragaceae. The cp genomes ranged from 156,738 bp to 156,960 bp in length and had a typical quadripartite structure with a conserved genome arrangement. Comparative analysis revealed the intron of rpl2 has been lost in Heuchera parviflora, Tiarella polyphylla, M. rossii and O. rupifraga but presents in the reference genome of Penthorum chinense. Seven cp hotspot regions (trnH-psbA, trnR-atpA, atpI-rps2, rps2-rpoC2, petN-psbM, rps4-trnT and rpl33-rps18) were identified between Oresitrophe and Mukdenia, while four hotspots (trnQ-psbK, trnR-atpA, trnS-psbZ and rpl33-rps18) were identified within Oresitrophe. In addition, 24 polymorphic cpSSR loci were found between Oresitrophe and Mukdenia. Most importantly, we successfully developed 126 intergeneric polymorphic gSSR markers between Oresitrophe and Mukdenia, as well as 452 intrageneric ones within Oresitrophe.
    [Show full text]
  • Next-Generation Genome Sequencing of Sedum Plumbizincicola Sheds
    plants Article Next-Generation Genome Sequencing of Sedum plumbizincicola Sheds Light on the Structural Evolution of Plastid rRNA Operon and Phylogenetic Implications within Saxifragales 1,2, 1, 1 3 1 1 Hengwu Ding y, Ran Zhu y, Jinxiu Dong , De Bi , Lan Jiang , Juhua Zeng , Qingyu Huang 1, Huan Liu 3, Wenzhong Xu 4, Longhua Wu 3,* and Xianzhao Kan 1,2,* 1 The Institute of Bioinformatics, College of Life Sciences, Anhui Normal University, Wuhu 241000, Anhui, China; [email protected] (H.D.); [email protected] (R.Z.); [email protected] (J.D.); [email protected] (L.J.); [email protected] (J.Z.); [email protected] (Q.H.) 2 The Provincial Key Laboratory of the Conservation and Exploitation Research of Biological Resources in Anhui, Wuhu 241000, Anhui, China 3 National Engineering Laboratory of Soil Pollution Control and Remediation Technologies, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, Jiangsu, China; [email protected] (D.B.); [email protected] (H.L.) 4 Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; [email protected] * Correspondence: [email protected] (L.W.); [email protected] (X.K.); Tel.: +86-25-8688-1128 (L.W.); +86-139-5537-2268 (X.K.) These authors equally contributed to this work. y Received: 27 August 2019; Accepted: 28 September 2019; Published: 29 September 2019 Abstract: The genus Sedum, with about 470 recognized species, is classified in the family Crassulaceae of the order Saxifragales. Phylogenetic relationships within the Saxifragales are still unresolved and controversial.
    [Show full text]
  • The Complete Chloroplast Genome of Myriophyllum Spicatum Reveals a 4-Kb Inversion and New Insights Regarding Plastome Evolution in Haloragaceae
    Received: 9 March 2019 | Revised: 11 September 2019 | Accepted: 5 February 2020 DOI: 10.1002/ece3.6125 ORIGINAL RESEARCH The complete chloroplast genome of Myriophyllum spicatum reveals a 4-kb inversion and new insights regarding plastome evolution in Haloragaceae Yi-Ying Liao1 | Yu Liu1 | Xing Liu2 | Tian-Feng Lü2 | Ruth Wambui Mbichi3 | Tao Wan1 | Fan Liu4 1Key Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Abstract Shenzhen, China Myriophyllum, among the most species-rich genera of aquatic angiosperms with ca. 2 Laboratory of Plant Systematics and 68 species, is an extensively distributed hydrophyte lineage in the cosmopolitan fam- Evolutionary Biology, College of Life Science, Wuhan University, Wuhan, China ily Haloragaceae. The chloroplast (cp) genome is useful in the study of genetic evo- 3Sino-Africa Joint Research Centre, Chinese lution, phylogenetic analysis, and molecular dating of controversial taxa. Here, we Academy of Science, Wuhan, China sequenced and assembled the whole chloroplast genome of Myriophyllum spicatum L. 4Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical and compared it to other species in the order Saxifragales. The complete chloroplast Garden, Chinese Academy of Sciences, genome sequence of M. spicatum is 158,858 bp long and displays a quadripartite Wuhan, China structure with two inverted repeats (IR) separating the large single copy (LSC) region Correspondence from the small single copy (SSC) region. Based on sequence identification and the Fan Liu, Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical phylogenetic analysis, a 4-kb phylogenetically informative inversion between trnE- Garden, Chinese Academy of Sciences, trnC in Myriophyllum was determined, and we have placed this inversion on a lineage Wuhan, China.
    [Show full text]
  • Japanese Plants in UK Gardens
    Conservation of threatened Japanese plants in UK gardens Ildikó Whitton and Suzanne Sharrock Conservation of threatened Japanese plants in UK gardens By Ildikó Whitton and Suzanne Sharrock August 2011 Recommended citation: Whitton, I. and Sharrock, S., 2011. Conservation of threatened Japanese plants in UK gardens. Botanic Gardens Conservation International, Richmond, UK. ISBN: 978-1-905164-36-3 Published by Botanic Gardens Conservation International Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK Front cover image: Rosa hirtula (Ildikó Whitton) Back cover image: Bletilla striata (John Anderson) Design: John Morgan, Seacape. www.seascapedesign.co.uk Acknowledgements This project was supported by the Daiwa Anglo-Japanese Foundation. BGCI is grateful for the efforts made by botanic gardens around the world to supply plant data to the PlantSearch database. We also acknowledge the contribution of the participating institutions that responded to our survey and provided information about their collections, especially our case study contributors. Particular thanks are due to Owen Johnson (The Tree Register) and Noelia Alvarez (Royal Botanic Gardens, Kew) for providing additional data, Meirion Jones at BGCI for assistance with data analysis, and Junko Katayama for translation into Japanese and coordination of contacts with the Japanese Association of Botanic Gardens. Botanic Gardens Conservation International (BGCI) Linking more than 800 botanic gardens and other partners in some 120 countries, BGCI forms the world’s largest plant conservation network. From grass-roots action to global policy development, BGCI operates at all levels to achieve plant conservation, environmental education and development goals. We aim to ensure that plants are recognised as one of the world’s most important natural resources, providing essential ecosystem services and underpinning all life on Earth.
    [Show full text]