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Life History Mediates the Trade-Offs Among Different Components Of
1 Life history mediates the trade-offs among different components 2 of demographic resilience 3 4 Authors: Pol Capdevila1,2*, Iain Stott3, James Cant4, Maria Beger4,5, Gwilym 5 Rowlands1, Molly Grace1, Roberto Salguero-Gómez1,5,6 6 1Zoology Department, Oxford University, Zoology Research and Administration Building, 11a 7 Mansfield Rd, Oxford OX1 3SZ, UK 8 2School of Biological Sciences, University of Bristol, 24 Tyndall Ave, BS8 1TQ, Bristol, UK 9 3School of Life Sciences, University of Lincoln, Brayford Pool, Lincoln LN6 7TS, UK 10 4School of Biology, Faculty of Biological Sciences, University of Leeds, UK, LS2 9JT 11 5Centre for Biodiversity and Conservation Science, School of Biological Sciences, University of 12 Queensland, Brisbane, 4072, Australia 13 6Max Planck Institute for Demographic Research, Konrad Zuse Straße 1, Rostock 18057, Germany 14 *Corresponding author: [email protected] 1 15 Table S1. Taxonomic summary of the matrix population models used in our 16 analyses. N sp represents the number of species and N pop the number of 17 populations. Kingdom Class Order N sp N pop Perciformes 3 3 Actinopterygii Siluriformes 1 1 Elasmobranchii Lamniformes 1 2 Accipitriformes 5 9 Anseriformes 1 3 Charadriiformes 3 6 Falconiformes 1 2 Galliformes 1 1 Aves Gruiformes 1 1 Passeriformes 1 1 Pelecaniformes 1 1 Procellariiformes 2 2 Animalia Psittaciformes 2 3 Strigiformes 1 1 Artiodactyla 5 43 Carnivora 12 24 Chiroptera 1 1 Mammalia Diprotodontia 1 1 Primates 9 14 Proboscidea 1 1 Rodentia 4 5 Crocodylia 1 1 Reptilia Squamata 1 3 Testudines 8 19 Alismatales 1 1 Asparagales 5 18 Dioscoreales 1 1 Liliopsida Liliales 14 72 Poales 7 19 Zingiberales 2 6 Apiales 7 20 Plantae Asterales 20 44 Brassicales 10 34 Caryophyllales 33 84 Magnoliopsida Cornales 1 1 Dipsacales 2 6 Ericales 11 60 Fabales 12 70 2 Fagales 4 31 Gentianales 3 4 Geraniales 2 8 Lamiales 11 45 Magnoliales 1 1 Malpighiales 10 23 Malvales 4 8 Myrtales 3 12 Proteales 1 2 Ranunculales 11 31 Rosales 4 7 Sapindales 4 4 Saxifragales 1 1 Solanales 2 2 Pinopsida Pinales 4 6 18 3 19 Table S2. -
Full of Beans: a Study on the Alignment of Two Flowering Plants Classification Systems
Full of beans: a study on the alignment of two flowering plants classification systems Yi-Yun Cheng and Bertram Ludäscher School of Information Sciences, University of Illinois at Urbana-Champaign, USA {yiyunyc2,ludaesch}@illinois.edu Abstract. Advancements in technologies such as DNA analysis have given rise to new ways in organizing organisms in biodiversity classification systems. In this paper, we examine the feasibility of aligning two classification systems for flowering plants using a logic-based, Region Connection Calculus (RCC-5) ap- proach. The older “Cronquist system” (1981) classifies plants using their mor- phological features, while the more recent Angiosperm Phylogeny Group IV (APG IV) (2016) system classifies based on many new methods including ge- nome-level analysis. In our approach, we align pairwise concepts X and Y from two taxonomies using five basic set relations: congruence (X=Y), inclusion (X>Y), inverse inclusion (X<Y), overlap (X><Y), and disjointness (X!Y). With some of the RCC-5 relationships among the Fabaceae family (beans family) and the Sapindaceae family (maple family) uncertain, we anticipate that the merging of the two classification systems will lead to numerous merged solutions, so- called possible worlds. Our research demonstrates how logic-based alignment with ambiguities can lead to multiple merged solutions, which would not have been feasible when aligning taxonomies, classifications, or other knowledge or- ganization systems (KOS) manually. We believe that this work can introduce a novel approach for aligning KOS, where merged possible worlds can serve as a minimum viable product for engaging domain experts in the loop. Keywords: taxonomy alignment, KOS alignment, interoperability 1 Introduction With the advent of large-scale technologies and datasets, it has become increasingly difficult to organize information using a stable unitary classification scheme over time. -
Generic Classification of Amaryllidaceae Tribe Hippeastreae Nicolás García,1 Alan W
TAXON 2019 García & al. • Genera of Hippeastreae SYSTEMATICS AND PHYLOGENY Generic classification of Amaryllidaceae tribe Hippeastreae Nicolás García,1 Alan W. Meerow,2 Silvia Arroyo-Leuenberger,3 Renata S. Oliveira,4 Julie H. Dutilh,4 Pamela S. Soltis5 & Walter S. Judd5 1 Herbario EIF & Laboratorio de Sistemática y Evolución de Plantas, Facultad de Ciencias Forestales y de la Conservación de la Naturaleza, Universidad de Chile, Av. Santa Rosa 11315, La Pintana, Santiago, Chile 2 USDA-ARS-SHRS, National Germplasm Repository, 13601 Old Cutler Rd., Miami, Florida 33158, U.S.A. 3 Instituto de Botánica Darwinion, Labardén 200, CC 22, B1642HYD, San Isidro, Buenos Aires, Argentina 4 Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Postal Code 6109, 13083-970 Campinas, SP, Brazil 5 Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, U.S.A. Address for correspondence: Nicolás García, [email protected] DOI https://doi.org/10.1002/tax.12062 Abstract A robust generic classification for Amaryllidaceae has remained elusive mainly due to the lack of unequivocal diagnostic characters, a consequence of highly canalized variation and a deeply reticulated evolutionary history. A consensus classification is pro- posed here, based on recent molecular phylogenetic studies, morphological and cytogenetic variation, and accounting for secondary criteria of classification, such as nomenclatural stability. Using the latest sutribal classification of Hippeastreae (Hippeastrinae and Traubiinae) as a foundation, we propose the recognition of six genera, namely Eremolirion gen. nov., Hippeastrum, Phycella s.l., Rhodolirium s.str., Traubia, and Zephyranthes s.l. A subgeneric classification is suggested for Hippeastrum and Zephyranthes to denote putative subclades. -
Atoll Research Bulletin No. 503 the Vascular Plants Of
ATOLL RESEARCH BULLETIN NO. 503 THE VASCULAR PLANTS OF MAJURO ATOLL, REPUBLIC OF THE MARSHALL ISLANDS BY NANCY VANDER VELDE ISSUED BY NATIONAL MUSEUM OF NATURAL HISTORY SMITHSONIAN INSTITUTION WASHINGTON, D.C., U.S.A. AUGUST 2003 Uliga Figure 1. Majuro Atoll THE VASCULAR PLANTS OF MAJURO ATOLL, REPUBLIC OF THE MARSHALL ISLANDS ABSTRACT Majuro Atoll has been a center of activity for the Marshall Islands since 1944 and is now the major population center and port of entry for the country. Previous to the accompanying study, no thorough documentation has been made of the vascular plants of Majuro Atoll. There were only reports that were either part of much larger discussions on the entire Micronesian region or the Marshall Islands as a whole, and were of a very limited scope. Previous reports by Fosberg, Sachet & Oliver (1979, 1982, 1987) presented only 115 vascular plants on Majuro Atoll. In this study, 563 vascular plants have been recorded on Majuro. INTRODUCTION The accompanying report presents a complete flora of Majuro Atoll, which has never been done before. It includes a listing of all species, notation as to origin (i.e. indigenous, aboriginal introduction, recent introduction), as well as the original range of each. The major synonyms are also listed. For almost all, English common names are presented. Marshallese names are given, where these were found, and spelled according to the current spelling system, aside from limitations in diacritic markings. A brief notation of location is given for many of the species. The entire list of 563 plants is provided to give the people a means of gaining a better understanding of the nature of the plants of Majuro Atoll. -
(Monocot): the Story of a Gene Family Expansion Alberto Cenci, Nathalie Chantret, Mathieu Rouard
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion Alberto Cenci, Nathalie Chantret, Mathieu Rouard To cite this version: Alberto Cenci, Nathalie Chantret, Mathieu Rouard. Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. Frontiers in Plant Science, Frontiers, 2018, 9, 10.3389/fpls.2018.01843. hal-02621636 HAL Id: hal-02621636 https://hal.inrae.fr/hal-02621636 Submitted on 26 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License fpls-09-01843 December 8, 2018 Time: 15:6 # 1 ORIGINAL RESEARCH published: 11 December 2018 doi: 10.3389/fpls.2018.01843 Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion Alberto Cenci1*, Nathalie Chantret2 and Mathieu Rouard1 1 Bioversity International, Parc Scientifique Agropolis II, Montpellier, France, 2 AGAP, INRA, CIRAD, Université de Montpellier, Montpellier, France Plant cell walls play a fundamental role in several plant traits and also influence crop use as livestock nutrition or biofuel production. The Glycosyltransferase family 61 (GT61) is involved in the synthesis of cell wall xylans. -
Linguistic Imperialism'
Title Linnaeus, Chinese flora and 'linguistic imperialism' Author(s) Cook, GA The 2009 Symposium of the University of Hong Kong Summer Institute in Arts & Humanities: 'The Appropriation of Chinese Citation Nature during the Enlightenment', Hong Kong, China, 14 July 2009. Issued Date 2009 URL http://hdl.handle.net/10722/123694 Rights Creative Commons: Attribution 3.0 Hong Kong License Linnaeus, Chinese flora and ‘linguistic imperialism’ Alexandra Cook Department of Philosophy HKU [email protected] Theses Linnaeus did not practice „linguistic imperialism‟ in naming Chinese plants; In naming Chinese plants, Linnaeus applied his rules less restrictively than is generally thought (Needham, Schiebinger); assigned a relatively small percentage of patronymic names; and offered a road map to many indigenous usages and names through his synonymies and materia medica. Some statistics 160 Chinese species determined by Linnaeus father and son; 100 of these in Species plantarum (1753): SP marks official beginning of modern botanical nomenclature Binomial names: Genus + specific epithet Total of 319 Chinese species known to L. and L. fil. Total genera named by Linnaeus: 1,313 23% of 286 economically-useful species named by Linnaeus have generic names referring to use contradicting his rules of 1737 (Crit. Bot.) Patronymics: 10% (i.e. 13) of 131 genera designations of Chinese plants by L. and L. fil. However, mine is primarily a qualitative, rather than a quantitative or statistical, argument. Critiques of Linnaean generic names Joseph Needham, with Lu Gwei-Djen and Huang Hsin-Tsung, Science and Civilisation in China, vol. 6: Biology and Biological Technology, part I: Botany (Cambridge: Cambridge UP, 1986). -
Threatened and Endangered Species List
Effective April 15, 2009 - List is subject to revision For a complete list of Tennessee's Rare and Endangered Species, visit the Natural Areas website at http://tennessee.gov/environment/na/ Aquatic and Semi-aquatic Plants and Aquatic Animals with Protected Status State Federal Type Class Order Scientific Name Common Name Status Status Habit Amphibian Amphibia Anura Gyrinophilus gulolineatus Berry Cave Salamander T Amphibian Amphibia Anura Gyrinophilus palleucus Tennessee Cave Salamander T Crustacean Malacostraca Decapoda Cambarus bouchardi Big South Fork Crayfish E Crustacean Malacostraca Decapoda Cambarus cymatilis A Crayfish E Crustacean Malacostraca Decapoda Cambarus deweesae Valley Flame Crayfish E Crustacean Malacostraca Decapoda Cambarus extraneus Chickamauga Crayfish T Crustacean Malacostraca Decapoda Cambarus obeyensis Obey Crayfish T Crustacean Malacostraca Decapoda Cambarus pristinus A Crayfish E Crustacean Malacostraca Decapoda Cambarus williami "Brawley's Fork Crayfish" E Crustacean Malacostraca Decapoda Fallicambarus hortoni Hatchie Burrowing Crayfish E Crustacean Malocostraca Decapoda Orconectes incomptus Tennessee Cave Crayfish E Crustacean Malocostraca Decapoda Orconectes shoupi Nashville Crayfish E LE Crustacean Malocostraca Decapoda Orconectes wrighti A Crayfish E Fern and Fern Ally Filicopsida Polypodiales Dryopteris carthusiana Spinulose Shield Fern T Bogs Fern and Fern Ally Filicopsida Polypodiales Dryopteris cristata Crested Shield-Fern T FACW, OBL, Bogs Fern and Fern Ally Filicopsida Polypodiales Trichomanes boschianum -
The Fossil Record of Angiosperm Families in Relation to Baraminology
The Proceedings of the International Conference on Creationism Volume 7 Article 31 2013 The Fossil Record of Angiosperm Families in Relation to Baraminology Roger W. Sanders Bryan College Follow this and additional works at: https://digitalcommons.cedarville.edu/icc_proceedings DigitalCommons@Cedarville provides a publication platform for fully open access journals, which means that all articles are available on the Internet to all users immediately upon publication. However, the opinions and sentiments expressed by the authors of articles published in our journals do not necessarily indicate the endorsement or reflect the views of DigitalCommons@Cedarville, the Centennial Library, or Cedarville University and its employees. The authors are solely responsible for the content of their work. Please address questions to [email protected]. Browse the contents of this volume of The Proceedings of the International Conference on Creationism. Recommended Citation Sanders, Roger W. (2013) "The Fossil Record of Angiosperm Families in Relation to Baraminology," The Proceedings of the International Conference on Creationism: Vol. 7 , Article 31. Available at: https://digitalcommons.cedarville.edu/icc_proceedings/vol7/iss1/31 Proceedings of the Seventh International Conference on Creationism. Pittsburgh, PA: Creation Science Fellowship THE FOSSIL RECORD OF ANGIOSPERM FAMILIES IN RELATION TO BARAMINOLOGY Roger W. Sanders, Ph.D., Bryan College #7802, 721 Bryan Drive, Dayton, TN 37321 USA KEYWORDS: Angiosperms, flowering plants, fossils, baramins, Flood, post-Flood continuity criterion, continuous fossil record ABSTRACT To help estimate the number and boundaries of created kinds (i.e., baramins) of flowering plants, the fossil record has been analyzed. To designate the status of baramin, a criterion is applied that tests whether some but not all of a group’s hierarchically immediate subgroups have a fossil record back to the Flood (accepted here as near the Cretaceous-Paleogene boundary). -
Highlights Section Reports Urena Lobata L
DACS-P-00124 Volume 53, Number 5, September - October 2014 DPI’s Bureau of Entomology, Nematology and Plant Pathology (the botany section is included in this bureau) produces TRI- OLOGY six times a year, covering two months of activity in each issue. The report includes detection activities from nursery plant inspections, routine and emergency program surveys, and requests for identification of plants and pests from the public. Samples are also occasionally sent from other states or countries for identification or diagnosis. Highlights Section Reports Urena lobata L. (Caesar weed, Congo jute, bur mallow), Malvaceae. In areas with freezing Botany Section 2 temperatures, this perennial shrub can die back in winter to return from the roots in spring. Entomology Section 5 This species grows well in disturbed sites, including Nematology Section 11 Urena lobata L. (Caesar weed) wetland areas where it can form thickets. It is included Photograph courtesy of Roger Hammer, Atlas of Florida Vascular Plants on the Florida Exotic Pest Plant Council (FLEPPC) Plant Pathology Section 13 http://florida.plantatlas.usf.edu/Photo. Invasive Species List-Category I list (exotic plants that aspx?id=2119 have altered native plant communities). Nacoleia charesalis, a crambid moth, a new Western Hemisphere record. This brown moth is widely distributed in Asia. Since the initial detection in 2012, it has become widely distributed in Florida. Some reports were delayed until the type specimen could be borrowed to confirm the specific identification. Nacoleia charesalis, a crambid moth, male (mm scale at top of image) Brachyodina metzi, a soldier fly, a new Continental Photograph courtesy of James E. -
Setting up Milestones: Sneath on Adanson and Mayr on Darwin
Chapter 1 Setting Up Milestones: Sneath on Adanson and Mayr on Darwin Mary P. Winsor Abstract History is written by people, and whether those people are historians, scientists, or philos- ophers makes a difference in what they want from the past. Usually, scientists hope to foretell or even influence the future, a motive uncongenial to historians. Two instances of biologists setting up historical figures as milestones, heroic forerunners of their own views, exemplify important issues about the writing of history. In 1957 Peter Sneath, a founder of numerical taxonomy, identified Michel Adanson as his precursor, proposing the term Adan- sonian for principles Sneath advocated. Sneath did not realize that statements about Adanson by previous scientists, including Francis Bather and Georges Cuvier, misrepresented his methods. Sneath’s historical interpretation was immediately challenged by botanists who had paid close attention to Adanson's writings. With co-author Robert Sokal, Sneath appealed to historians of science to adjudicate the question, but none responded. In 1957 Ernst Mayr announced that Charles Darwin had replaced typological thinking by population thinking. Mayr’s claim about the dominance of typology acquired new lustre when melded with Karl Popper’s coinage, “essentialism.” Mayr’s historical interpretation reflected 20th- century concerns but was supported by scant historical evidence. The example of Adanson undermines Mayr’s claim, but here too historians failed to supply an effective evaluation. Both stories warn that scientists must take responsibility for their own history. Several recent occurrences indicate a revival of interest in systematic biology and the broad problems of classification … . [Their effect is] to disturb our confidence in the concepts with which we have worked so long and to make us wonder whether any System at all can be based on the Theory of Descent. -
History of Taxonomy
History of Taxonomy The history of taxonomy dates back to the origin of human language. Western scientific taxonomy started in Greek some hundred years BC and are here divided into prelinnaean and postlinnaean. The most important works are cited and the progress of taxonomy (with the focus on botanical taxonomy) are described up to the era of the Swedish botanist Carl Linnaeus, who founded modern taxonomy. The development after Linnaeus is characterized by a taxonomy that increasingly have come to reflect the paradigm of evolution. The used characters have extended from morphological to molecular. Nomenclatural rules have developed strongly during the 19th and 20th century, and during the last decade traditional nomenclature has been challenged by advocates of the Phylocode. Mariette Manktelow Dept of Systematic Biology Evolutionary Biology Centre Uppsala University Norbyv. 18D SE-752 36 Uppsala E-mail: [email protected] 1. Pre-Linnaean taxonomy 1.1. Earliest taxonomy Taxonomy is as old as the language skill of mankind. It has always been essential to know the names of edible as well as poisonous plants in order to communicate acquired experiences to other members of the family and the tribe. Since my profession is that of a systematic botanist, I will focus my lecture on botanical taxonomy. A taxonomist should be aware of that apart from scientific taxonomy there is and has always been folk taxonomy, which is of great importance in, for example, ethnobiological studies. When we speak about ancient taxonomy we usually mean the history in the Western world, starting with Romans and Greek. However, the earliest traces are not from the West, but from the East. -
System Garden Masterplan, Melbourne University 2018
SYstem GARDEN LANDSCAPE MASTERPLAN STAGE 4 - MASTERPLAN FINAL REPORT 8th MARCH 2018 landscape architecture and GLAS urban design CONTENTS EXECUTIVE SUMMARY 1 INTRODUCTION 3 HistorY OF THE SYstem GARDEN 4 THE GARDEN TODAY 5 KEY ISSUES FACING THE SYstem GARDEN 6 Masterplan VISION 7 K EY VALUES 8 THE SYstem GARDEN AND OC21 9 VISION: A BOTANIC GARDEN FOR THE CAMPUS 10 MASTERPLAN PRINCIPLES 11 THE SYstem GARDEN MASTERPLAN 13 strategic INITIATIVES 15 BotanicAL DivERSiTy - SuB-cLASS PLANTiNG GuiDELiNES 16 INTERPRETATION StrateGY 17 UNIVERSITY HISTORY 18 INDIGENOUS ConnecTION 19 SUSTAINABILITY 20 MATERIALS PALETTE 21 MATERiALS PALETTE - LiGHTiNG AND PoWER 22 MATERiALS PALETTE - coNSoLiDATiNG SERvicES 23 FURNITURE 24 Access 25 ART AND EVENTS IN THE GARDEN 26 Masterplan ELEMENTS 27 master PLAN ELEMENTS 28 PERIMETER PATH AND EDGE SPACES 29 SYstem GARDEN GATEs 30 ENTRy AvENuES - BiZARRE SENTRiES 31 THE FORMAL GARDEN 32 WETLAND cANAL 37 THE INFORMAL GARDEN 38 COURTYARD GARDENS 43 rainforest GARDEN 44 FERN AND LICHEN COURTYARD 45 APOTHECARY GARDEN 47 RESEARCH GARDENS 48 implementation STAGING 50 APPENDIX 1: costing 55 APPENDIX 2: CONSULTANT REPORTS 57 EXecUTIVE SUMMARY IntroDUction The System Garden is a special space. Originally laid out in 1856 by Professor Frederick McCoy and The Core values, are key to the current and future operation of the Parkville campus, they have a • indigenous connection: the System Garden provides indigenous interpretation through Edward LaTrobe Bateman, it is a botanic garden configured specifically for learning. It provides a direct link to the University’s OC21 strategy (Our Campus in the 21st Century) and will drive the the Billibellary’s walk and stop within the System Garden.