Laboratory Protocol Laboratory Procedure Manual
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Eicosanoids in Carcinogenesis
4open 2019, 2,9 © B.L.D.M. Brücher and I.S. Jamall, Published by EDP Sciences 2019 https://doi.org/10.1051/fopen/2018008 Special issue: Disruption of homeostasis-induced signaling and crosstalk in the carcinogenesis paradigm “Epistemology of the origin of cancer” Available online at: Guest Editor: Obul R. Bandapalli www.4open-sciences.org REVIEW ARTICLE Eicosanoids in carcinogenesis Björn L.D.M. Brücher1,2,3,*, Ijaz S. Jamall1,2,4 1 Theodor-Billroth-Academy®, Germany, USA 2 INCORE, International Consortium of Research Excellence of the Theodor-Billroth-Academy®, Germany, USA 3 Department of Surgery, Carl-Thiem-Klinikum, Cottbus, Germany 4 Risk-Based Decisions Inc., Sacramento, CA, USA Received 21 March 2018, Accepted 16 December 2018 Abstract- - Inflammation is the body’s reaction to pathogenic (biological or chemical) stimuli and covers a burgeoning list of compounds and pathways that act in concert to maintain the health of the organism. Eicosanoids and related fatty acid derivatives can be formed from arachidonic acid and other polyenoic fatty acids via the cyclooxygenase and lipoxygenase pathways generating a variety of pro- and anti-inflammatory mediators, such as prostaglandins, leukotrienes, lipoxins, resolvins and others. The cytochrome P450 pathway leads to the formation of hydroxy fatty acids, such as 20-hydroxyeicosatetraenoic acid, and epoxy eicosanoids. Free radical reactions induced by reactive oxygen and/or nitrogen free radical species lead to oxygenated lipids such as isoprostanes or isolevuglandins which also exhibit pro-inflammatory activities. Eicosanoids and their metabolites play fundamental endocrine, autocrine and paracrine roles in both physiological and pathological signaling in various diseases. These molecules induce various unsaturated fatty acid dependent signaling pathways that influence crosstalk, alter cell–cell interactions, and result in a wide spectrum of cellular dysfunctions including those of the tissue microenvironment. -
Cell Culture
Electronic Supplementary Material (ESI) for Organic & Biomolecular Chemistry. This journal is © The Royal Society of Chemistry 2014 SUPPLEMENTARY INFORMATION Bleomycin-induced trans lipid formation in cell membranes and in liposome models A. Cort, T. Ozben, A. Sansone, S. Barata-Vallejo, C. Chatgilialoglu, C. Ferreri* * email: [email protected] 1 MATERIALS and METHODS II Ferrous ammonium sulfate Fe(NH4)2(SO4)2 6 H20 (Fe AS, Carlo Erba, Milan), bleomycin sulfate (BLM, Cayman Chemical, USA) 2-mercaptoethanol (2-ME, Fluka, Sigma-Aldrich, Milan), commercially available cis and trans FAME, 1-palmitoyl-2-oleoyl phosphatidyl choline (POPC, Avanti Lipids, USA) and the phospholipids from soybean lecithin (Sigma-Aldrich, Milan), were used without further purification. Chloroform, methanol, n-hexane (HPLC grade, Merck KGaA, Germany) were used without further purification. Incubations were carried out in an incubating orbital shaker (Carlo Erba, Milan) keeping the temperature at 37 °C. When necessary silica gel thin-layer chromatography (analytical) was performed on Merck silica gel 60 plates (0.25 mm thickness, Merck KGaA, Germany) and the spots were detected by spraying the plate with cerium ammonium sulfate/ammonium molybdate reagent. Fatty acid methyl esters were analyzed by GC (Agilent 6850, Milan) equipped with a 60m × 0.25mm × 0.25μm (50%-cyanopropyl)-methylpolysiloxane column (DB23, Agilent, USA), and a flame ionization detector with the following oven program: temperature started from 165 °C, held for 3 min, followed by an increase of 1 °C/min up to 195 °C, held for 40 min, followed by a second increase of 10 °C/min up to 240 °C, and held for 10 min. -
Essential Fatty Acid and Cell Culture: Where We Stand
Essential Fatty Acid And Cell Culture: Where We Stand Phone: +1 418.874.0054 Toll Free: 1 877.SILICYCLE (North America only) Fax : +1 418.874.0355 [email protected] www.SiliCycle.com SiliCycle Inc - Worldwide Headquarters 2500, Parc-Technologique Blvd Quebec City (Quebec) G1P 4S6 CANADA Tissue engineering aims at creating relevant human in vitro models for evaluation of drugs or for transplantation. Those models are intended to be as physiological as possible. However, essential fatty acids are currently ignored in the process. Essential for proper membrane fluidity, these lipidic building-blocks are also implicated in several cellular processes, including cell signaling. In fact, the beneficial effects of a proper omega-3 diet were clearly established in several clinical studies for a large array of pathological conditions including cardiovascular diseases, diabetes, chronic inflammation and neurodegenerative diseases. Ultimately, these in vivo effects are orchestrated at the cellular level; hence supplementation with essentials fatty acids is becoming paramount for cell culture models as it started to emerge. Conditions are met for cell biology to integrate fatty acids in the culture medium and enter the lipidomic era! © SiliCycle inc. 2017 EssentialEssential Fatty fatty Acid acid Production production And and Metabolism metabolism Essential Fatty Acid And Cell Culture: Where Do We Stand pg = prostaglandin tx = thromboxane pgi = protacyclin It = leukotriene Mammalian cells are routinely cultured using the usual basal Omega-3 family Omega-6 family medium that is a bicarbonate-buffered isotonic aqueous = less inflammatory solution, with a high level of glucose supplemented with α-linolenic acid = more inflammatory α-linolenic acid vitamins as well as essential amino acids. -
Identification of Α,Β-Hydrolase Domain Containing Protein 6 As a Diacylglycerol Lipase in Neuro-2A Cells
fnmol-12-00286 November 23, 2019 Time: 16:5 # 1 ORIGINAL RESEARCH published: 26 November 2019 doi: 10.3389/fnmol.2019.00286 Identification of a,b-Hydrolase Domain Containing Protein 6 as a Diacylglycerol Lipase in Neuro-2a Cells Annelot C. M. van Esbroeck1†, Vasudev Kantae1,2†, Xinyu Di2, Tom van der Wel1, Hans den Dulk1, Anna F. Stevens1, Simar Singh3,4, Alexander T. Bakker1, Bogdan I. Florea5, Nephi Stella3,4, Herman S. Overkleeft5, Thomas Hankemeier2 and Mario van der Stelt1* 1 Department of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, Leiden, Netherlands, 2 Department of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research, Leiden University, Leiden, Netherlands, 3 Department of Pharmacology, University of Washington, Seattle, WA, United States, 4 Department of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, United States, 5 Department of Bio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, Netherlands The endocannabinoid 2-arachidonoylglycerol (2-AG) is involved in neuronal differentiation. This study aimed to identify the biosynthetic enzymes responsible for 2-AG production during retinoic acid (RA)-induced neurite outgrowth of Neuro-2a cells. First, we confirmed that RA stimulation of Neuro-2a cells increases 2-AG production Edited by: Sachin Patel, and neurite outgrowth. The diacylglycerol lipase (DAGL) inhibitor DH376 blocked 2-AG Vanderbilt University Medical Center, production and reduced neuronal differentiation. Surprisingly, CRISPR/Cas9-mediated United States knockdown of DAGLa and DAGLb in Neuro-2a cells did not reduce 2-AG levels, Reviewed by: suggesting another enzyme capable of producing 2-AG in this cell line. Chemical Kenneth Mackie, Indiana University Bloomington, proteomics revealed DAGLb and a,b-hydrolase domain containing protein (ABHD6) as United States the only targets of DH376 in Neuro-2a cells. -
Long-Chain Fatty Acids Activate Calcium Channels in Ventricular Myocytes
Proc. Nati. Acad. Sci. USA Vol. 89, pp. 6452-6456, July 1992 Medical Sciences Long-chain fatty acids activate calcium channels in ventricular myocytes (free fatty acids/arachidonic acid/olekic add) JAMES MIN-CHE HUANG, Hu XIAN, AND MARVIN BACANER* Department of Physiology, University of Minnesota, Minneapolis, MN 55455 Communicated by James Serrin, March 30, 1992 (receivedfor review September 15, 1991) ABSTRACT Nonesterified fatty acids accumulate at sites down (>70%o decrease in ICa) during the 10- to 15-min control of tissue injury and necrosis. In cardiac tissue the concentra- period were discarded. Whole-cell voltage-clamp experi- tions of oleic acid, arachidonic acid, leukotrienes, and other ments with myocytes were done at 320C with 2- to 3-MU glass fatty acids increase greatly during ischemia due to receptor or pipettes (Narishige PB 7 puller). Dagan 3900A patch-clamp nonreceptor-mediated activation of phospholipases and/or circuit, axon DMA interface, IBM cloned AT 386 computer, diminished reacylation. In ischemic myocardium, the time and P-CLAMP software were used for command pulses, data course of increase in fatty acids and tissue calcium closely acquisition, and analysis. All lipophilic agents were dissolved parallels irreversible cardiac damage. We postulated that fatty in 95% ethanol to make stock solutions and then diluted to acids released from membrane phospholipids may be involved <0.1% ethanol concentration before being applied by con- in the increase ofintraceilular calcium. We report here that low tinuous bath perfusion. In control studies, 0.1% ethanol in the concentrations (3-30 ,AM) of each long-chain unsaturated buffer solution had no influence on ICa or membrane response (oleic, linoleic, linolenic, and arachidonic) and saturated to fatty acids (see text and Fig. -
Properties of Fatty Acids in Dispersions of Emulsified Lipid and Bile Salt and the Significance of These Properties in Fat Absorption in the Pig and the Sheep
Downloaded from Br. y. Nutr. (1969), 23, 249 249 https://www.cambridge.org/core Properties of fatty acids in dispersions of emulsified lipid and bile salt and the significance of these properties in fat absorption in the pig and the sheep BY C. P. FREEMAN . IP address: Unilever Research Laboratory, Colworth House, Sharnbrook, Bedford (Received I July 1968-Accepted 25 October 1968) 170.106.35.76 I. The behaviour of fatty acids in dilute bile salt solution and in dispersions of triglyceride in bile salt solution was examined. The properties of fatty acids in bile salt solution were defined in terms of their saturation ratio, and of the critical micellar concentration of bile , on salt for each fatty acid as solute. The partition of fatty acids between the oil phase and the micellar phase of the dispersions was defined as the distribution coefficient K M/O. The 25 Sep 2021 at 20:48:57 phases were separated by ultracentrifugation. 2. Of the fatty acids examined, palmitic and stearic acids behaved in bile salt solution as typical non-polar solutes. Lauric, oleic and linoleic acids had properties similar to typical amphiphiles. The effectiveness of these and other amphiphiles was expressed in terms of an amphiphilic index. 3. The trans-fatty acids, vaccenic acid and linolelaidic acid possessed solubility properties similar to their &-isomers. The properties of elaidic acid were intermediate between those , subject to the Cambridge Core terms of use, available at of the non-polar and the amphiphilic solutes. 4. The distribution coefficients of fatty acids differed less significantly than their solubilities in bile salt solution, but were influenced to some extent by the composition of the oil phase. -
Fatty Acids and Stable Isotope Ratios in Shiitake Mushrooms
foods Article Fatty Acids and Stable Isotope Ratios in Shiitake Mushrooms (Lentinula edodes) Indicate the Origin of the Cultivation Substrate Used: A Preliminary Case Study in Korea 1, 1, 2 2 3 Ill-Min Chung y, So-Yeon Kim y, Jae-Gu Han , Won-Sik Kong , Mun Yhung Jung and Seung-Hyun Kim 1,* 1 Department of Crop Science, College of Sanghuh Life Science, Konkuk University, Seoul 05029, Korea; [email protected] (I.-M.C.); [email protected] (S.-Y.K.) 2 National Institute of Horticultural and Herbal Science, Rural Development Administration, Eumseong 27709, Korea; [email protected] (J.-G.H.); [email protected] (W.-S.K.) 3 Department of Food Science and Biotechnology, Graduate School, Woosuk University, Wanju-gun 55338, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-02-2049-6163; Fax: +82-02-455-1044 These authors contributed equally to this study. y Received: 22 July 2020; Accepted: 28 August 2020; Published: 1 September 2020 Abstract: Shiitake mushroom (Lentinula edodes) is commonly consumed worldwide and is cultivated in many farms in Korea using Chinese substrates owing to a lack of knowledge on how to prepare sawdust-based substrate blocks (bag cultivation). Consequently, issues related to the origin of the Korean or Chinese substrate used in shiitake mushrooms produced using bag cultivation have been reported. Here, we investigated differences in fatty acids (FAs) and stable isotope ratios (SIRs) in shiitake mushrooms cultivated using Korean and Chinese substrates under similar conditions (strain, temperature, humidity, etc.) and depending on the harvesting cycle. The total FA level decreased significantly by 5.49 mg g 1 as the harvesting cycle increased (p < 0.0001); however, no differences · − were found in FAs between shiitake mushrooms cultivated using Korean and Chinese substrates. -
Derived Variables - Nutrients Responses to the 116 Items on the DQES Are Converted to Nutrients by Programs Developed at the CCV
Derived Variables - Nutrients Responses to the 116 items on the DQES are converted to nutrients by programs developed at the CCV. Two standard portion factors used in the calculation of nutrient are included in the data sets. Variable Description PSF Portion Standard Factor APSF a Alcohol Portion Standard Factor Sources of nutrient data Values for most nutrients are based on the Australian food composition data base, NUTTAB95.1 Nutrient values form other sources are listed below. None of these new values have been tested or validated so the CCV recommend that the values be used with caution; the CCV welcome any feedback. o Folate (Folate) and vitamin E (VitE) are derived from British food composition tables.2 o Alpha-Carotene (AlphCarot), Beta-Carotene (Bet_Carot), Beta-Cryptoxanthin (BetaCrypt), Lutein plus Zeaxanthin (LutnZeax) and Lycopene (Lycopene) are derived from the USDA data base3 and are measured in micrograms/day. o Glycemic index (GlycIndex ) and glycemic load (GlycLoad) are derived from an international table.4 Note that the variable Bet_Carot measures total ß-carotene intake, and should not be confused with the variable BetaCarot which estimates ß-carotene equivalents (mcg/day) from NUTTAB and is calculated as the sum of the ß-carotene and half the amounts of - carotene and - and ß-cryptoxanthins present. Although values for the 2 variables are likely to be highly correlated, values may differ to a large extent, having been estimated from different databases, developed at different times in different countries. Also different foods would have been averaged to match values with the DQES items. Hodge at al have described the derivation of values for Glycemic index (GI) and glycemic load (GL) as follows:5 ‘Glycemic index is a method of ranking foods on the basis of the blood glucose response to a given amount of carbohydrate from that food. -
Organic Chemical Characterization of Primary and Secondary Biodiesel Exhaust Particulate Matter John Kasumba University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2015 Organic Chemical Characterization Of Primary And Secondary Biodiesel Exhaust Particulate Matter John Kasumba University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Part of the Environmental Engineering Commons, and the Place and Environment Commons Recommended Citation Kasumba, John, "Organic Chemical Characterization Of Primary And Secondary Biodiesel Exhaust Particulate Matter" (2015). Graduate College Dissertations and Theses. 358. https://scholarworks.uvm.edu/graddis/358 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. ORGANIC CHEMICAL CHARACTERIZATION OF PRIMARY AND SECONDARY BIODIESEL EXHAUST PARTICULATE MATTER A Dissertation Presented by John Kasumba to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Civil and Environmental Engineering May, 2015 Defense Date: October 29, 2014 Dissertation Examination Committee: Britt A. Holmén, Ph.D, Advisor Giuseppe A. Petrucci, Ph.D, Chairperson Donna M. Rizzo, Ph.D Robert G. Jenkins, Ph.D Cynthia J. Forehand, Ph.D., Dean of the Graduate College ABSTRACT Biodiesel use and production has significantly increased in the United States and in other parts of the world in the past decade. This change is driven by energy security and global climate legislation mandating reductions in the use of petroleum-based diesel. -
Statement Position Statement on Fat Consumption And
Posicionamento sobre o Consumo de Gorduras e Saúde Cardiovascular – 2021 Izar et al. Posicionamento Posicionamento sobre o Consumo de Gorduras e Saúde Cardiovascular – 2021 Position Statement on Fat Consumption and Cardiovascular Health – 2020 Realização: Departamento de Aterosclerose (DA) da Sociedade Brasileira de Cardiologia (SBC) Conselho de Normatizações e Diretrizes (2020-2021): Brivaldo Markman Filho, Antonio Carlos Sobral Sousa, Aurora Felice Castro Issa, Bruno Ramos Nascimento, Harry Correa Filho, Marcelo Luiz Campos Vieira Coordenador de Normatizações e Diretrizes (2020-2021): Brivaldo Markman Filho Autores do Posicionamento: Maria Cristina de Oliveira Izar,1 Ana Maria Lottenberg,2,3 Viviane Zorzanelli Rocha Giraldez,4 Raul Dias dos Santos Filho,4 Roberta Marcondes Machado,3 Adriana Bertolami,5 Marcelo Heitor Vieira Assad,6 José Francisco Kerr Saraiva,7 André Arpad Faludi,5 Annie Seixas Bello Moreira,8 Bruno Geloneze,9 Carlos Daniel Magnoni,5 Carlos Scherr,10 Cristiane Kovacs Amaral,5 Daniel Branco de Araújo,5 Dennys Esper Corrêa Cintra,9 Edna Regina Nakandakare,11 Francisco Antonio Helfenstein Fonseca,1 Isabela Cardoso Pimentel Mota,5 José Ernesto dos Santos,11 Juliana Tieko Kato,1 Lis Mie Masuzawa Beda,3 Lis Proença Vieira,12 Marcelo Chiara Bertolami,5 Marcelo Macedo Rogero,11 Maria Silvia Ferrari Lavrador,13 Miyoko Nakasato,4 Nagila Raquel Teixeira Damasceno,11 Renato Jorge Alves,14 Roberta Soares Lara,15 Rosana Perim Costa,16 Valéria Arruda Machado1 Universidade Federal de São Paulo (UNIFESP),1 São Paulo, SP – Brasil Hospital -
PROFIL ASAM AMINO, ASAM LEMAK DAN KOMPONEN VOLATIL IKAN GURAME SEGAR (Osphronemus Gouramy) DAN KUKUS
Profil Asam Amino, Asam Lemak, Pratama et al. JPHPI 2018, Volume 21 Nomor 2 Available online: journal.ipb.ac.id/index.php/jphpi PROFIL ASAM AMINO, ASAM LEMAK DAN KOMPONEN VOLATIL IKAN GURAME SEGAR (Osphronemus gouramy) DAN KUKUS Rusky Intan Pratama*, Iis Rostini, Emma Rochima Laboratorium Pengolahan Hasil Perikanan, Fakultas Perikanan dan Ilmu Kelautan Universitas Padjadjaran, Kampus Jatinangor, Jalan Raya Bdg-Sumedang Km. 21, Sumedang Jawa Barat Telepon (022) 87701519 , Faks (022) 87701518 *Korespondensi: [email protected] Diterima: 25 April 2018/Disetujui: 10 Juni 2018 Cara sitasi: Pratama RI, Rostini I, Rochima E. 2018. Profil asam amino, asam lemak dan komponen volatil ikan gurame segar (Osphronemus gouramy) dan kukus. Jurnal Pengolahan Hasil Perikanan Indonesia. 21(2): 218-231. Abstrak Komponen volatil merupakan kelompok senyawa-senyawa volatil yang berpengaruh terhadap karakteristik flavor komoditas dan penerimaannya secara keseluruhan oleh konsumen karena pengaruhnya terhadap karakteristik aroma. Tujuan dari penelitian ini ialah untuk mengidentifikasi komposisi senyawa- senyawa volatil, profil asam amino dan asam lemak salah satu jenis ikan budidaya air tawar khas Jawa Barat yaitu ikan gurame dalam kondisi segar dan kukus. Metode ekstraksi sampel Solid Phase Micro Extraction dilakukan dengan suhu ekstraksi 40oC untuk sampel segar dan 80oC untuk sampel kukus selama 45 menit kemudian senyawa volatil dideteksi dan diidentifikasi menggunakan Gas Chromatography/Mass Spectrometry. Analisis pendukung lain yang dilakukan ialah analisis profil asam amino dan profil asam lemak menggunakan High Performance Liquid Chromatography. Senyawa volatil pada sampel ikan gurame segar yang terdeteksi ialah 17 senyawa sedangkan pada hasil pengukusannya sebanyak 38 senyawa. Asam amino yang terkandung lebih tinggi untuk sampel ikan gurame segar dan kukus ialah asam glutamat (3,12%, 4,09%). -
Serum N-6 Fatty Acids Are Positively Associated with Growth in 6-To-10-Year Old Ugandan Children Regardless of HIV Status—A Cross-Sectional Study
nutrients Article Serum n-6 Fatty Acids are Positively Associated with Growth in 6-to-10-Year Old Ugandan Children Regardless of HIV Status—A Cross-Sectional Study Raghav Jain 1 , Amara E. Ezeamama 2, Alla Sikorskii 2, William Yakah 1 , Sarah Zalwango 3, Philippa Musoke 4, Michael J. Boivin 5,6 and Jenifer I. Fenton 1,* 1 Department of Food Science and Human Nutrition, Michigan State University, East Lansing, MI 48824, USA; [email protected] (R.J.); [email protected] (W.Y.) 2 Department of Psychiatry, Michigan State University, East Lansing, MI 48824, USA; [email protected] (A.E.E.); [email protected] (A.S.) 3 Directorate of Public Health and Environment, Kampala Capital City Authority, Kampala 00256, Uganda; [email protected] 4 Makerere University-Johns Hopkins University Research Collaboration, Kampala 00256, Uganda; [email protected] 5 Departments of Psychiatry, Neurology & Ophthalmology, Michigan State University, East Lansing, MI 48824, USA; [email protected] 6 Department of Psychiatry, University of Michigan, Ann Arbor, MI 48109, USA * Correspondence: [email protected]; Tel.: +1-517-353-3342; Fax: +1-517-353-8963 Received: 8 April 2019; Accepted: 30 May 2019; Published: 4 June 2019 Abstract: Fatty acids (FAs) are crucial in child growth and development. In Uganda, antiretroviral therapy (ART) has drastically reduced perinatal human immunodeficiency virus (HIV) infection of infants, however, the interplay of FAs, ART, and HIV in relation to child growth is not well understood. To investigate this, serum was collected from 240 children between 6–10 years old in Uganda and analyzed for FAs using gas-chromatography mass-spectrometry.