H1NWHAT? Making Sense of the Virology of the Flu Matthew S
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Tracing the Origins of SARS-COV-2 in Coronavirus Phylogenies
Tracing the origins of SARS-COV-2 in coronavirus phylogenies 1 2 3,4 5* 6,7** Erwan Sallard , José Halloy , Didier Casane , Etienne Decroly a nd Jacques van Helden 1) École Normale Supérieure de Paris, 45 rue d’Ulm, 75005 Paris, France. ORCID: 0000-0002-2324-3633. 2) Université de Paris, CNRS, LIED UMR 8236, 85 bd Saint-Germain, 75006 Paris, France. ORCID: 0000-0003-1555-2484 3) Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. ORCID: 0000-0001-5463-1092 4) Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. 5) Aix-Marseille Univ, CNRS, UMR 7257, AFMB, Case 925, 163 Avenue de Luminy, 13288 Marseille Cedex 09, France. ORCID: 0000-0002-6046-024X 6) CNRS, Institut Français de Bioinformatique, IFB-core, UMS 3601, Evry, France. ORCID: 0000-0002-8799-8584 7) Aix-Marseille Univ, INSERM, lab. Theory and Approaches of Genome Complexity (TAGC), Marseille, France. * [email protected], **[email protected] The last two authors have equally contributed Abstract SARS-CoV-2 is a new human coronavirus (CoV), which emerged in China in late 2019 and is responsible for the global COVID-19 pandemic that caused more than 59 million infections and 1.4 million deaths in 11 months. Understanding the origin of this virus is an important issue and it is necessary to determine the mechanisms of its dissemination in order to contain future epidemics. Based on phylogenetic inferences, sequence analysis and structure-function relationships of coronavirus proteins, informed by the knowledge currently available on the virus, we discuss the different scenarios evoked to account for the origin - natural or synthetic - of the virus. -
Generation of Biologically Contained Ebola Viruses
Generation of biologically contained Ebola viruses Peter Halfmann*, Jin Hyun Kim*, Hideki Ebihara†‡, Takeshi Noda†, Gabriele Neumann*, Heinz Feldmann‡, and Yoshihiro Kawaoka*†§¶ *Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706; §Division of Virology, Department of Microbiology and Immunology, and †International Research Center for Infectious Diseases, Institute of Medical Science, University of Tokyo, Tokyo 113-0033, Japan; and ‡Special Pathogens Program, National Microbiology Laboratory, Public Health Agency of Canada and Department of Medical Microbiology, University of Manitoba, Winnipeg, MB, Canada R3E 3R2 Edited by Peter Palese, Mount Sinai School of Medicine, New York, NY, and approved December 12, 2007 (received for review August 25, 2007) Ebola virus (EBOV), a public health concern in Africa and a potential and is critical for viral budding (18, 19). VP24 is essential for biological weapon, is classified as a biosafety level-4 agent because the formation of nucleocapsids composed of NP, VP35, and of its high mortality rate and the lack of approved vaccines and viral RNA (20). The only viral surface glycoprotein, GP, plays antivirals. Basic research into the mechanisms of EBOV pathoge- a role in viral attachment and entry (21–24). nicity and the development of effective countermeasures are Reverse genetics systems for negative-sense RNA viruses (i.e., restricted by the current biosafety classification of EBOVs. We their artificial generation and modification from cloned cDNAs) therefore developed biologically contained EBOV that express a are now established in the field (25, 26). We have exploited this reporter gene instead of the VP30 gene, which encodes an essential technology to generate EBOVs that lack the essential VP30 gene transcription factor. -
Download H5N1 Timeline
1 H5N1 Timeline of Select Episodes and their Significance Gaymon Bennett, Center for Biological Futures, Basic Sciences, Hutchinson Center In September 2011 researchers from the Erasmus Medical Center in Rotterdam, The Netherlands led by Ron Fouchier announced that they had successfully engineered a mutant form of influenza H5N1, “avian influenza,” that is transmissible by respiratory route between mammals (ferrets). Given that ferrets’ immune response to influenza is considered to be similar to the response in humans, the studies suggest that the engineered H5N1 is likely transmissible human-to-human as well. The researchers suggested that the transmissible flu they had created remained as lethal as the original strain on which their work had been carried out, a strain estimated to be fatal in ~30-60% of cases in humans. Several months later it became widely known that a second research group, led by University of Tokyo and University of Wisconsin professor Yoshihiro Kawaoka, similarly had engineered a mammal-to-mammal transmissible form of H5N1. The conduct of the work, the handling of its announcement, and the political turmoil set into motion by the prospect of its publication have raised serious questions about the limits of free inquiry and the regulation of research with dangerous organisms. It has also raised serious questions about the terms under which such research should be organized, justified, and critiqued. In the table that follows I provide a timeline of the key episodes in the unfolding of this event, with an explanation of how each episode is significant. I pay particular attention to how the story being told about the research and importance had changed, and how its political framing has led to a game of justification and counter justification in which the account of the science and how it should be interpreted has become formed by the polemics which have taken hold. -
The 1918 Flu Epidemic “I Had a Little Bird and His Name Was Enza I Opened up the Window and in Flew Enza” Children’S Rhyme, 1918 Some Grim Statistics
The 1918 Flu Epidemic “I had a little bird and his name was Enza I opened up the window and in flew Enza” Children’s rhyme, 1918 Some Grim Statistics • The 1918 influenza pandemic: • Killed more than 20 million people worldwide. [Some estimates range as high as 75 million.] By conservative estimates this was almost 2.5% of the world population. • Killed 675,000 Americans (550,000 excess deaths). • Preferentially killed those between 21 and 29 years old. • Lowered life expectancy in America in 1918 by 12 years (48 to 36 years for men, 54 to 42 for women). • Accounted for 80% of American battle deaths in World War I. • Killed more Americans than died in World War I, World War II, the Korean War and Vietnam combined (423,000). • Killed more people in two months than the Black Death did in one year. • Is almost completely forgotten. How does the 1918 pandemic stack up? Date Historical Name Death toll (estimate) Disease 429–426 BC Plague of Athens 75,000–100,000 typhus (?) 1665–1666 Great Plague of London 100,000 plague 1629–1631 Italian Plague 280,000 plague 1968–1969 Hong Kong flu 1,000,000 influenza 1957–1958 Asian Flu 2,000,000 influenza 165–180 Antonine Plague 5,000,000 smallpox(?) 541–542 Plague of Justinian 25–50 million plague 1960–present HIV/AIDS pandemic > 30,000,000 HIV/AIDS 1918–1920 1918 Spanish Flu 75,000,000 Spanish Flu Virus 1331–1353 Black Death 75–200 million (30–60% of population) plague Unanswered Questions • Where did it start? • How did it spread so quickly and worldwide? • Why was it so lethal and so contagious? • Why did it preferentially kill those between 20 and 40 and not the very young or very old? • Could it happen again? An Introduction to the Spanish Flu The Spanish Flu came in Three Waves The First Wave • Spring 1918: an epidemic of flu (“grippe”) passed through the U.S. -
Elizabeth Hart an Open Letter to the NSABB Re the Political and Ethical
Elizabeth Hart Adelaide, South Australia [email protected] 31 January 2012 An open letter to the NSABB re the political and ethical implications of lethal virus development For the attention of: Paul Keim, Acting Chair, National Science Advisory Board for Biosecurity Please note this letter and your response will be forwarded to other parties for information. cc: Michael Osterholm, NSABB Ron Fouchier, Erasmus MC Ab Osterhaus, Erasmus MC Yoshihiro Kawaoka, University of Wisconsin-Madison Peter Palese, Mount Sinai School of Medicine Tom Jefferson, Cochrane Vaccines Field Philip Campbell, Nature Caroline Ash, Science Deborah Cohen, British Medical Journal Dr Keim Further to our previous correspondence on the controversial topic of ‘lethal flu virus’ development. Please accept this open letter as a layperson’s perspective on this topic. Ron Fouchier and Ab Osterhaus have questioned “whether it is appropriate to have one country, i.e. the United States, dominate a discussion that has an impact on scientists and public health officials worldwide”.1 I am astonished at the naiveté of these scientists. Surely it must be obvious by now that by sponsoring development of a potentially lethal flu virus the United States could be in breach of the Biological Weapons Convention2, which entered into force in March 1975, i.e. Article 1 of the Convention states: Each State Party to this Convention undertakes never in any circumstances to develop, produce, stockpile or otherwise acquire or retain: (1) Microbial or other biological agents, or toxins whatever their origin or method of production, of types and in quantities that have no justification for prophylactic, protective or other peaceful purposes; 1 Preventing pandemics: The fight over flu. -
Spanish Flu Pandemic Resulted in a Higher Than Expected Mortality Rate for Young Adults.[9]
10/25/2019 Spanish flu - Wikipedia Spanish flu The 1918 influenza pandemic (January 1918 – December 1920; colloquially known as Spanish flu) was an unusually deadly influenza pandemic, the first of the two pandemics involving H1N1 influenza virus.[1] It infected 500 million people around the world,[2] including people on remote Pacific islands and in the Arctic. Probably 50 million, and possibly as high as 100 million (three to five percent of Earth's population at the time) died, making it one of the deadliest epidemics in human history.[3][4][5] Historical and epidemiological data are inadequate to identify with certainty the pandemic's geographic origin.[2] Infectious diseases already limited life expectancy in the early 20th century, but life expectancy in the United States dropped by about 12 years in the first year of the pandemic.[6][7][8] Most influenza outbreaks disproportionately kill the very young and the very old, with a higher survival rate for those in-between. However, the Spanish flu pandemic resulted in a higher than expected mortality rate for young adults.[9] To maintain morale, wartime censors minimized early reports of illness and mortality in Germany, the United [10][11] Kingdom, France, and the United States. Papers were free to report the epidemic's effects in neutral Spain (such Soldiers from Fort Riley, Kansas, ill with Spanish flu at [12] [13] as the grave illness of King Alfonso XIII). These stories created a false impression of Spain as especially hard hit, a hospital ward at Camp Funston thereby giving rise to the pandemic's nickname, "Spanish flu".[14] Scientists offer several possible explanations for the high mortality rate of the 1918 influenza pandemic.