Isolation and Sequence of a Edna Clone for Human Tyrosinase Tha Maps at the Mouse C-Albino Locus BYOUNG S

Total Page:16

File Type:pdf, Size:1020Kb

Isolation and Sequence of a Edna Clone for Human Tyrosinase Tha Maps at the Mouse C-Albino Locus BYOUNG S Proc. Nall. Acad. Sci. USA Vol. 84, pp. 7473-7477, November 1987 Biochemistry Isolation and sequence of a eDNA clone for human tyrosinase tha maps at the mouse c-albino locus BYOUNG S. KWON*t, ASIFA K. HAQ*, SEYMOUR H. POMERANTZt, AND RUTH HALABAN§ *Molecular Genetics Laboratory, Guthrie Research Institute, Sayre, PA 18840; tDepartment of Biological Chemistry, University of Maryland School of Medicine, Baltimore, MD 21201; and §Department of Dermatology, Yale University School of Medicine, New Haven, CT 06510 Communicated by Aaron B. Lerner, July 16, 1987 ABSTRACT Screening of a Xgtll human melanocyte on an oligo[d(T)I-cellulose column (11, 12). A cDNA li cDNA library with antibodies against hamster tyrosinase was prepared employing a Xgtll cloning vector (13-15) (monophenol, L-dopa:oxygen oxidoreductase, EC 1.14.18.1) Xgtll library contained 1.7 x 106 independent phages resulted in the isolation of 16 clones. The cDNA inserts from 13 immunobiological screening and analysis of the fusion of the 16 clones cross-hybridized with each other, indicating teins produced by Xgtll cDNA clones were carried c that they were from related mRNA species. One of the cDNA described by Young and Davis (15). The rabbit anti-hal clones, Pmel34, detected one mRNA species with an approxi- tyrosinase antibodies and their application in the stun mate length of 2.4 kilobases that was expressed preferentially tyrosinases have been described in detail (10, 16). in normal and malignant melanocytes but not in other cell RNA Blot Hybridization. Poly(A)+ RNA from n( types. The amino acid sequence deduced from the nucleotide human melanocytes, melanoma cells, neuroblastoma sequence showed that the putative human tyrosinase is com- lines, HL-60 (human promyelocytic leukemia cell line) posed of 548 amino acids with a molecular weight of 62,610. HepG2 (human hepatocarcinoma cell line) was fractiol The deduced protein contains glycosylation sites and histidine- on a 1.2% (wt/vol) formaldehyde denaturing gel (17), t rich sites that could be used for copper binding. Southern blot ferred to a GeneScreenPlus membrane (New England analysis of DNA derived from newborn mice carrying lethal clear), and hybridized with 32P-labeled cDNA pr( albino deletion mutations revealed that Pmel34 maps near or at Pmel14-2, a cDNA clone that was isolated from our hi the c-albino locus, the position of the structural gene for melanocyte cDNA library, was used as a control p tyrosinase. because the corresponding RNA was detectable in si5 amounts in all human and murine cells tested. Tyrosinase (monophenol, L-dopa:oxygen oxidoreductase, Genomic DNA Blot Analysis. Newborn mice of the g EC 1.14.18.1) is a copper-based oxidoreductase that cata- types C3H/C3H and cch/cH were provided by Sal lyzes the oxidation of tyrosine to dopa and the oxidation of Gluecksohn-Waelsch (Albert Einstein College of Medic dopa to dopaquinone (1). It is a key enzyme in melanin Newborn mice provided by M. Lynn Lamoreux (Texas A biosynthesis. Oculocutaneous albinism, a group of auto- somal-recessive diseases in humans (2) and animals, is University, College Station, TX) were littermates of characterized by reduced or absent melanin in skin, hair, and genotypes C14COs/C14Cos cCh/c14CWs, and cch/cch. These eyes. Tyrosinase-negative albino melanocytes have no were descended from three mice of the genotype C6H/C tyrosinase activity in vitro. that were given to M. L. Lamoreux by S. Gluecks Genetic control of pigmentation has been extensively Waelsch. These stocks were crossed twice onto JU/Ct/ studied in mice. There is evidence that the c-albino locus at +c/+c mice, then once onto C57BL/6J mice, then for e chromosome 7 codes for the structural gene for tyrosinase (3, generations onto a C57BL/6J-cch/cch stock descended I 4). Mutations at this locus affect both tyrosinase activity and mice provided by D. Townsend (University of Minnes coat color (5, 6). Minneapolis), and then sibling mated for six generation A nucleic acid probe for tyrosinase would be an invaluable High molecular weight DNAs of newborn mice of var tool for studies of the regulation of tyrosinase, of the genotypes were prepared as described (18). Restric molecular basis of human albinism, and of various mouse endonuclease digests ofDNA were electrophoresed in a 0 mutations affecting coat and eye color. We report here the agarose gel at 40C, transferred (19) to GeneScreenPlus, isolation and sequence ofa cDNA clone for human tyrosinase hybridized with the 32P-labeled cDNA probes. Pmell7- that maps at or near the mouse c-locus.¶ cDNA clone that was isolated from our human melanoi cDNA library, was utilized as a control probe for the purr MATERIALS AND METHODS of estimating the amounts of DNA in each lane bect Pmell7-1 detected a single EcoRI fragment in all mouse D Cell Culture. Normal human melanocytes, melanotic mel- tested. The intensity of the hybridizing bands was meast anoma cells (LG), and neuroblastoma cells (SK-N-SH) were by a densitometer at 500 nm (Beckman DU-8BUV/ cultured as described (7-9). The murine neuroblastoma cell Spectrophotometer). line NIE115 was obtained from X. 0. Breakefield (E. K. DNA Sequencing. DNA restriction fragments subclone Shriver Center, Waltham, MA). Proteins of normal melano- M13 vectors (20) were sequenced by the dideoxy ch cytes were radiolabeled with [355]methionine (Amersham) termination technique (21), with modifications made to (100 ,XCi/ml, 1390 Ci/mmol; 1 Ci = 37 GBq) as described commodate 2'-deoxyadenosine 5'-[a-[35S]thio]triphospt (10). (22). A forward primer (New England Biolabs) compleir cDNA Libraries and Screening. RNA from normal human tary to the lacZ sequence adjacent to the 5'-side of the Ec melanocytes was prepared, and poly(A)+ RNA was purified tTo whom reprint requests should be addressed. The publication costs of this article were defrayed in part by page charge 9This sequence is being deposited in the EMBL/GenBank data t payment. This article must therefore be hereby marked "advertisement" (Bolt, Beranek, and Newman Laboratories, Cambridge, MA, in accordance with 18 U.S.C. §1734 solely to indicate this fact. Eur. Mol. Biol. Lab., Heidelberg) (accession no. J03581). Downloaded by guest on October 5, 2021 7474 Biochemistry: Kwon et al. Proc. Natl. Acad. Sci. USA 84 (1987) site in Xgtll was used for the direct sequencing of cDNA of the cDNA clones. A lysogen of Xmell6 was prepared, and insert end points in Xgtll (23). the bacterial lysate was analyzed by 6% NaDodSO4/poly- acrylamide gel electrophoresis and by competitive immuno- RESULTS precipitation assay. Xmell6 was used for this experiment because the Xmell6 plaques produced the strongest signal in Initial screening of 500,000 recombinant phage plaques with plaque screening with anti-tyrosinase antibodies even though the rabbit anti-tyrosinase antibodies identified 16 indepen- Xmel6 contained an incomplete cDNA of -0.7 kilobase dent clones. The cDNA inserts varied in size from 0.2 to 1.6 pairs. A fusion protein was produced in Y1089/Xmell6 that kilobase pairs. The longest cDNA insert (-1.6 kilobase pairs) had a relative size of 140 kDa (Fig. lb). The fusion protein from Xme134 hybridized to 12 other cDNA inserts and shared was 25 kDa larger than Escherichia coli 8-galactosidase, an overlapping restriction enzyme pattern (Fig. la). The indicating that the incomplete cDNA in Xmell6 was fused to other three cDNA inserts (not included in the figure) were not .3-galactosidase gene in frame. Synthesis of both /3-galacto- related to the 13 cDNA clones. A cDNA insert contained in sidase and the fusion protein was dependent on induction one of these, Xmell7-1, was utilized as a control probe. The with isopropyl 13-D-thiogalactopyranoside. The production of cDNA inserts of Xmell6, Xmel34, Xmel4O, and Xmell7-1 were immunologically reactive tyrosinase protein in the lysate of subcloned into pBR322 to yield Pmell6, Pmel34, Pmel4O, and Xmell6 lysogen was tested by competition assay using Pmell7-1, respectively, and used for further characterization metabolically labeled melanocyte cell extracts as a source for tyrosinase. Bacterial lysates of the Xmell6 lysogen (2 x 107 a 0 200 400 600 800 1000 1200 1400 1600 180 2000 2200 2400 bacterial cells in 100 pil) competed with roughly 70% of the anti-tyrosinase antibodies as judged from the intensity of the tyrosinase bands and the radioactivity in the relevant gel slices (Fig. lc). A"34 To examine whether mRNA homologous to Pmel34 is ex- A me 33 Xmel44 pressed preferentially in melanocytes, RNA gel blot analysis of A me 16 poly(A)+ mRNA from cells ofmelanocytic and nonmelanocytic Xmel 4 lineage was performed. Pmel34 hybridized to 21S (=2.4 A mM 52 Xmel 16 kilobase) mRNA species from normal human melanocytes and me 106 human melanotic melanoma cells (LG) but not from HepG2, mel? HL-60, human or murine neuroblastoma (Fig. 2), human and A me 20 mouse fibroblasts, or lymphocytes (data not shown). The skin of mice carrying the radiation-induced albino b C alleles, such as c3Hlc3H, had no tyrosinase activity (4). The Mr tyrosinase activity levels in the skin of mice heterozygous 1 2 3 4 IKdI 1 2 between the lethal albino deletion and chinchilla were shown Mr IKdl to be intermediate between the normal and mutant homo- zygotes, consistent with the murine albino locus encoding the structural gene of tyrosinase (unpublished observation of S. 200 - Gluecksohn-Waelsch, reviewed in ref. 4). If the c-albino 94- locus codes for the structural gene for tyrosinase, tyrosinase 116 - cDNA should not detect any hybridizing band in DNA 67-b4 - 66.2 - extracted from c3H/c3H or c14Cos/c14Cos mice but should detect 40 -- hybridizing bands of normal and half intensity in DNA from 43- homozygote (cch/cch) and heterozygotes (cch/c3H and cch/ c)4Cos) respectively.
Recommended publications
  • Characterization of L-Serine Deaminases, Sdaa (PA2448) and Sdab 2 (PA5379), and Their Potential Role in Pseudomonas Aeruginosa 3 Pathogenesis 4 5 Sixto M
    bioRxiv preprint doi: https://doi.org/10.1101/394957; this version posted August 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Characterization of L-serine deaminases, SdaA (PA2448) and SdaB 2 (PA5379), and their potential role in Pseudomonas aeruginosa 3 pathogenesis 4 5 Sixto M. Leal1,6, Elaine Newman2 and Kalai Mathee1,3,4,5 * 6 7 Author affiliations: 8 9 1Department of Biological Sciences, College of Arts Sciences and 10 Education, Florida International University, Miami, United States of 11 America 12 2Department of Biological Sciences, Concordia University, Montreal, 13 Canada 14 3Department of Molecular Microbiology and Infectious Diseases, Herbert 15 Wertheim College of Medicine, Florida International University, Miami, 16 United States of America 17 4Biomolecular Sciences Institute, Florida International University, Miami, 18 United States of America 19 20 Present address: 21 22 5Department of Human and Molecular Genetics, Herbert Wertheim 23 College of Medicine, Florida International University, Miami, United States 24 of America 25 6Case Western Reserve University, United States of America 26 27 28 *Correspondance: Kalai Mathee, MS, PhD, 29 [email protected] 30 31 Telephone : 1-305-348-0628 32 33 Keywords: Serine Catabolism, Central Metabolism, TCA Cycle, Pyruvate, 34 Leucine Responsive Regulatory Protein (LRP), One Carbon Metabolism 35 Running title: P. aeruginosa L-serine deaminases 36 Subject category: Pathogenicity and Virulence/Host Response 37 1 bioRxiv preprint doi: https://doi.org/10.1101/394957; this version posted August 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder.
    [Show full text]
  • Production of L-Asparaginase II by Escherichia Coli HOWARD CEDAR and JAMES H
    JOURNAL OF BACTERIOLOGY, Dec. 1968, p. 2043-2048 Vol. 96, No. 6 Copyright @ 1968 American Society for Microbiology Printed in U.S.A. Production of L-Asparaginase II by Escherichia coli HOWARD CEDAR AND JAMES H. SCHWARTZ Department of Microbiology, New York University School ofMedicine, New York, New York 10016 Received for publication 30 July 1968 L-Asparaginase II was synthesized at constant rates by Escherichia coli under anaerobic conditions. The enzyme was produced optimally by bacteria grown between pH 7 and 8 at 37 C. Although some enzyme was formed aerobically, be- tween 100 and 1,000 times more asparaginase II was produced during anaerobic growth in media enriched with high concentrations of a variety of amino acids. Bacteria grown under these conditions should provide a rich starting material for the large-scale production of the enzyme. No single amino acid specifically induced the synthesis of the asparaginase, nor did L-asparagine, even when it was used as the only source of nitrogen. The enzyme was produced at lower rates in the presence of sugars; glucose was the most inhibitory. Deamidation of L-asparagine by extracts of the conditions which control the production of Escherichia coli was first reported in 1957 by asparaginase II. Tsuji (28). E. coli was later shown to produce two distinct asparaginases (L-asparagine amido- MATERIALS AND METHODS hydrolase, EC 3.5.1 .1) which differ in a number For most of the experiments, we used E. coli K-12 of properties, perhaps most significantly in wild type. We also used strain 22-64, which lacks their markedly different affinities for asparagine citrate synthase (10), and strain 309-1, which lacks (5, 24, 27).
    [Show full text]
  • Introduction to Proteins and Amino Acids Introduction
    Introduction to Proteins and Amino Acids Introduction • Twenty percent of the human body is made up of proteins. Proteins are the large, complex molecules that are critical for normal functioning of cells. • They are essential for the structure, function, and regulation of the body’s tissues and organs. • Proteins are made up of smaller units called amino acids, which are building blocks of proteins. They are attached to one another by peptide bonds forming a long chain of proteins. Amino acid structure and its classification • An amino acid contains both a carboxylic group and an amino group. Amino acids that have an amino group bonded directly to the alpha-carbon are referred to as alpha amino acids. • Every alpha amino acid has a carbon atom, called an alpha carbon, Cα ; bonded to a carboxylic acid, –COOH group; an amino, –NH2 group; a hydrogen atom; and an R group that is unique for every amino acid. Classification of amino acids • There are 20 amino acids. Based on the nature of their ‘R’ group, they are classified based on their polarity as: Classification based on essentiality: Essential amino acids are the amino acids which you need through your diet because your body cannot make them. Whereas non essential amino acids are the amino acids which are not an essential part of your diet because they can be synthesized by your body. Essential Non essential Histidine Alanine Isoleucine Arginine Leucine Aspargine Methionine Aspartate Phenyl alanine Cystine Threonine Glutamic acid Tryptophan Glycine Valine Ornithine Proline Serine Tyrosine Peptide bonds • Amino acids are linked together by ‘amide groups’ called peptide bonds.
    [Show full text]
  • Isolation and Nucleotide Sequence of the Cdna for Rat Liver Serine
    Proc. Natl. Acad. Sci. USA Vol. 85, pp. 5809-5813, August 1988 Biochemistry Isolation and nucleotide sequence of the cDNA for rat liver serine dehydratase mRNA and structures of the 5' and 3' flanking regions of the serine dehydratase gene (threonine dehydratase/hormonal regulation/consensus sequences) HIROFUMI OGAWA*t, DUNCAN A. MILLER*, TRACY DUNN*, YEU SU*, JAMES M. BURCHAMt, CARL PERAINOt, MOTOJI FUJIOKAt, KAY BABCOCK*, AND HENRY C. PITOT*§ *McArdle Laboratory for Cancer Research, The Medical School, University of Wisconsin, Madison, WI 53706; tDepartment of Biochemistry, Toyama Medical and Pharmaceutical University, Faculty of Medicine, Sugitani, Toyama 930-01, Japan; and tDivision of Biological and Medical Research, Argonne National Laboratory, Argonne, IL 60439 Communicated by Van R. Potter, April 15, 1988 (received for review December 29, 1987) ABSTRACT Rat serine dehydratase cDNA clones were determination of the exact size of DNA complementary to isolated from a Agtll cDNA library on the basis of their serine dehydratase mRNA was made by S1 nuclease and reactivity with monospecific immunoglobulin to the purified sequencing of genomic clones of the regions flanking the enzyme. Using the cDNA insert from a clone that encoded the gene. serine dehydratase subunit as a probe, additional clones were isolated from the same library by plaque hybridization. Nucle- otide sequence analysis of the largest clone obtained showed MATERIALS AND METHODS that it has 1444 base pairs with an open reading frame consisting of 1089 base pairs. The deduced amino acid sequence cDNA Cloning. A rat liver cDNA library constructed in contained sequences of several portions of the serine dehydra- Agtll phage (13) was screened for antibody-reactive plaques tase protein, as determined by Edman degradation.
    [Show full text]
  • Amino Acid Chemistry
    Handout 4 Amino Acid and Protein Chemistry ANSC 619 PHYSIOLOGICAL CHEMISTRY OF LIVESTOCK SPECIES Amino Acid Chemistry I. Chemistry of amino acids A. General amino acid structure + HN3- 1. All amino acids are carboxylic acids, i.e., they have a –COOH group at the #1 carbon. 2. All amino acids contain an amino group at the #2 carbon (may amino acids have a second amino group). 3. All amino acids are zwitterions – they contain both positive and negative charges at physiological pH. II. Essential and nonessential amino acids A. Nonessential amino acids: can make the carbon skeleton 1. From glycolysis. 2. From the TCA cycle. B. Nonessential if it can be made from an essential amino acid. 1. Amino acid "sparing". 2. May still be essential under some conditions. C. Essential amino acids 1. Branched chain amino acids (isoleucine, leucine and valine) 2. Lysine 3. Methionine 4. Phenyalanine 5. Threonine 6. Tryptophan 1 Handout 4 Amino Acid and Protein Chemistry D. Essential during rapid growth or for optimal health 1. Arginine 2. Histidine E. Nonessential amino acids 1. Alanine (from pyruvate) 2. Aspartate, asparagine (from oxaloacetate) 3. Cysteine (from serine and methionine) 4. Glutamate, glutamine (from α-ketoglutarate) 5. Glycine (from serine) 6. Proline (from glutamate) 7. Serine (from 3-phosphoglycerate) 8. Tyrosine (from phenylalanine) E. Nonessential and not required for protein synthesis 1. Hydroxyproline (made postranslationally from proline) 2. Hydroxylysine (made postranslationally from lysine) III. Acidic, basic, polar, and hydrophobic amino acids A. Acidic amino acids: amino acids that can donate a hydrogen ion (proton) and thereby decrease pH in an aqueous solution 1.
    [Show full text]
  • D-Tyrosine Adds an Anti-Melanogenic Effect to Cosmetic Peptides
    www.nature.com/scientificreports OPEN D-tyrosine adds an anti-melanogenic efect to cosmetic peptides Jisu Park1, Hyejung Jung2, Bohee Jang1, Hyun-Kuk Song1, Inn-Oc Han3 & Eok-Soo Oh1,2* D-tyrosine is known to negatively regulate melanin synthesis by inhibiting tyrosinase activity. Here, we further reveal that peptides containing terminal D-tyrosine can reduce the melanin contents of human melanocytes. The addition of D-tyrosine to the terminus of the commercial anti-wrinkle peptide, pentapeptide-18 endowed the peptide with the ability to reduce the melanin content and tyrosinase activity in human MNT-1 melanoma cells and primary melanocytes. Consistently, terminal D-tyrosine-containing pentapeptide-18 inhibited the melanogenesis induced by α-MSH treatment or UV irradiation of MNT-1 cells and reduced melanin synthesis in the epidermal basal layer of a 3D human skin model. Furthermore, the addition of D-tyrosine to an anti-aging peptide (GEKG) or an anti- infammatory peptide (GHK) endowed these short peptides with anti-melanogenic efects without altering their intrinsic efects. Together, these data suggest that the addition of D-tyrosine at the terminus of a short cosmetic peptide adds an anti-melanogenic efect to its intrinsic cosmetic efect. Our work ofers a novel means of generating dual-function cosmetic peptides. Melanin synthesis occurs in melanocytes and is an essential physiological process that determines the color of human skin and protects its DNA from UV damage1. It is closely related with the occurrence of pigmentary dis- orders2: the imbalanced regulation of melanin synthesis results in many pigmentary skin diseases that commonly afect men and women of all ethnic groups3, including hyperpigmentation disorders, such as melanocytic nevus, seborrheic keratosis, and melanoma, and hypopigmentation disorders, such as piebaldism, pityriasis, and vitiligo.
    [Show full text]
  • 7.016 Introductory Biology Fall 2018
    Solution key- 7.016 Problem Set 1- 2018 (This material is COPYRIGHT protected.) Question 1 (3pts) The following is the “line-angle” drawing of melanin, a pigment that determines hair color. Note: The carbon (C) and the hydrogen (H) atoms are not shown but implied. a) Clearly label ALL C and H atoms on the line angle drawing and write the molecular formula of melanin in the space below. C18H10O4N2 (0.5) b) On the line angle drawing, box one nonpolar functional group(0.5) and circle all electronegative elements (0.5). c) Do you think melanin would dissolve in water? Why or why not? Melanin has multiple electronegative elements (circled in the schematic) that can hydrogen bond with the surrounding water molecules allowing it to dissolve in water. You may also argue that although melanin has multiple electronegative elements, it has bulky aromatic rings and carbonyl group, which makes it a weak organic acid that does not dissolve in water. (These organic molecules are usually soluble in alkaline solution or solvents such as dimethyl sulphoxide or DMSO). (1pt, only the explanation will be graded) Question 2 (3pts) There are two types of melanin pigment in hair follicles: pheomelanin (which promotes red or blond hair color) and eumelanin (which promotes black or brown hair color). The following is the simplified outline of eumelanin and pheomelanin synthesis. a) 1The- E E5 catalyzed reactions proceed spontaneously in the forward direction (shown by an •) and not in the reverse direction (shown by •) within a cell. Explain why this is so. There are multiple correct answers: E1-E5 catalyzed reaction proceed spontaneously in the forward direction since they all involve the hydrolysis of high- energy bonds i.e.
    [Show full text]
  • Aspartate Aminotransferase Substrate Specificity Alteration
    ASPARTATE AMINOTRANSFERASE SUBSTRATE SPECIFICITY ALTERATION Cassandra A. Ricketts Capstone Advisor: Kathryn Muratore, Ph. D Capstone Completed Spring 2011 Graduating with University Honors in Biochemistry Major: Biochemistry, College of Arts and Sciences ABSTRACT The purpose of this project is to broaden the specificity of E. coli aspartate aminotransferase (eAATase) by mutating it. AATase has narrow specificity, while tyrosine aminotransferase (TATase) is similar to AATase, but has a much broader specificity. Through comparison of the amino acid sequences of TATase and AATase from different organisms, residues predicted to be involved in specificity of aminotransferases are mutated. The specificity of the wild-type eAATase for both aspartate and phenylalanine is confirmed through kinetic determination of kcat /Km, using a UV-Vis spectrophotometer to measure reaction rates. Sites for mutagenesis based on their predicted involvement in substrate specificity are being selected and will be introduced into the eAATase amino acid sequence. After the mutated enzymes are expressed, each mutant’s substrate specificity will be assessed. 2 | P a g e INTRODUCTION The goal of this project is to carry out site-directed mutagenesis in Escherichia coli aspartate aminotransferase (eAATase) in order to change its specificity to that of E. coli tyrosine aminotransferase (eTATase). Aminotransferases, (also called transaminases), catalyze the transfer of an amino group: the amino group is removed from an amino acid molecule , forming its keto acid, and transferred to a keto acid molecule , converting it to its amino acid form. AATase has a narrow specificity, using aspartate and glutamate, (and their corresponding keto -acids) as substrates (1) . Tyrosine aminotransferase is a paralog of AATase: it has a similar amino acid sequence , but a much broader specificity (2) .
    [Show full text]
  • Amino Acid Catabolism
    Amino Acid Catabolism • Dietary Proteins • Turnover of Protein • Cellular protein • Deamination • Urea cycle • Carbon skeletons of amino acids Amino Acid Metabolism •Metabolism of the 20 common amino acids is considered from the origins and fates of their: (1) Nitrogen atoms (2) Carbon skeletons •For mammals: Essential amino acids must be obtained from diet Nonessential amino acids - can be synthesized Amino Acid Catabolism • Amino acids from degraded proteins or from diet can be used for the biosynthesis of new proteins • During starvation proteins are degraded to amino acids to support glucose formation • First step is often removal of the α-amino group • Carbon chains are altered for entry into central pathways of carbon metabolism Dietary Proteins • Digested in intestine • by peptidases • transport of amino acids • active transport coupled with Na+ Protein Turnover • Proteins are continuously synthesized and degraded (turnover) (half-lives minutes to weeks) • Lysosomal hydrolysis degrades some proteins • Some proteins are targeted for degradation by a covalent attachment (through lysine residues) of ubiquitin (C terminus) • Proteasome hydrolyzes ubiquitinated proteins Turnover of Protein • Cellular protein • Proteasome degrades protein with Ub tags • T 1/2 determined by amino terminus residue • stable: ala, pro, gly, met greater than 20h • unstable: arg, lys, his, phe 2-30 min Ubibiquitin • Ubiquitin protein, 8.5 kD • highly conserved in yeast/humans • carboxy terminal attaches to ε-lysine amino group • Chains of 4 or more Ub molecules
    [Show full text]
  • The Human Gamma-Glutamyltransferase Gene Family
    Hum Genet (2008) 123:321–332 DOI 10.1007/s00439-008-0487-7 REVIEW The human gamma-glutamyltransferase gene family Nora Heisterkamp · John GroVen · David Warburton · Tam P. Sneddon Received: 9 November 2007 / Accepted: 6 March 2008 / Published online: 21 March 2008 © Springer-Verlag 2008 Abstract Assays for gamma-glutamyl transferase related genes or sequences. These sequences were given (GGT1, EC 2.3.2.2) activity in blood are widely used in a multiple diVerent names, leading to inconsistencies and clinical setting to measure tissue damage. The well-charac- confusion. Here we systematically evaluated all human terized GGT1 is an extracellular enzyme that is anchored to sequences related to GGT1 using genomic and cDNA data- the plasma membrane of cells. There, it hydrolyzes and base searches and identiWed thirteen genes belonging to the transfers -glutamyl moieties from glutathione and other extended GGT family, of which at least six appear to be -glutamyl compounds to acceptors. As such, it has a critical active. In collaboration with the HUGO Gene Nomencla- function in the metabolism of glutathione and in the con- ture Committee (HGNC) we have designated possible version of the leukotriene LTC4 to LTD4. GGT deWciency active genes with nucleotide or amino acid sequence simi- in man is rare and for the few patients reported to date, larity to GGT1, as GGT5 (formerly GGL, GGTLA1/GGT- mutations in GGT1 have not been described. These patients rel), GGT6 (formerly rat ggt6 homologue) and GGT7 (for- do secrete glutathione in urine and fail to metabolize LTC4. merly GGTL3, GGT4). Two loci have the potential to Earlier pre-genome investigations had indicated that encode only the light chain portion of GGT and have now besides GGT1, the human genome contains additional been designated GGTLC1 (formerly GGTL6, GGTLA4) and GGTLC2.
    [Show full text]
  • L-DOPA Causes Mitochondrial Dysfunction in Vitro a Novel
    International Journal of Biochemistry and Cell Biology 117 (2019) 105624 Contents lists available at ScienceDirect International Journal of Biochemistry and Cell Biology journal homepage: www.elsevier.com/locate/biocel L-DOPA causes mitochondrial dysfunction in vitro: A novel mechanism of L- DOPA toxicity uncovered T Steven Giannopoulosa, Kate Samardzica, Benjamin B.A. Raymondb, Steven P. Djordjevicb, Kenneth J. Rodgersa,* a Neurotoxin Research Group, School of Life Sciences, Faculty of Science, University of Technology Sydney, Australia b I3 institute, School of Life Sciences, Faculty of Science, University of Technology Sydney, Australia ARTICLE INFO ABSTRACT Keywords: In Parkinson's disease (PD), as in many other neurodegenerative disorders, mitochondrial dysfunction, protein L-dopa misfolding, and proteotoxic stress underly the disease process. For decades, the primary symptomatic treatment Parkinson’s disease for PD has been the dopamine precursor L-DOPA (Levodopa). L-DOPA however can initiate protein misfolding Mitochondrial dysfunction through its ability to mimic the protein amino acid L-tyrosine, resulting in random errors in aminoacylation and Non-protein amino acid L-DOPA becoming mistakenly inserted into the polypeptide chain of proteins in place of L-tyrosine. In the present study we examined the impact that the generation of DOPA-containing proteins had on human neuroblastoma cell (SH-SY5Y) function in vitro. We showed that even in the presence of antioxidants there was a significant accumulation of cytosolic ubiquitin in DOPA-treated cells, an upregulation in the endosomal-lyso- somal degradation system, deleterious changes to mitochondrial morphology and a marked decline in mi- tochondrial function.The effects of L-DOPA on mitochondrial function were not observed with D-DOPA, the stereoisomer of L-DOPA that cannot be inserted into proteins so did not result from oxidative stress.
    [Show full text]
  • Serine Dehydratase from Legionella Pneumophila: Novel Use of the C‑Terminal Cysteine As an Intrinsic Competitive Inhibitor † † ‡ James B
    Article pubs.acs.org/biochemistry Structure of L‑Serine Dehydratase from Legionella pneumophila: Novel Use of the C‑Terminal Cysteine as an Intrinsic Competitive Inhibitor † † ‡ James B. Thoden, Hazel M. Holden,*, and Gregory A. Grant*, † Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, United States ‡ Department of Developmental Biology and Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110, United States ABSTRACT: Here we report the first complete structure of a bacterial Fe−S L- serine dehydratase determined to 2.25 Å resolution. The structure is of the type 2 L- serine dehydratase from Legionella pneumophila that consists of a single polypeptide chain containing a catalytic α domain and a β domain that is structurally homologous to the “allosteric substrate binding” or ASB domain of D-3-phosphoglycerate dehydrogenase from Mycobacterium tuberculosis. The enzyme exists as a dimer of identical subunits, with each subunit exhibiting a bilobal architecture. The [4Fe-4S]2+ cluster is bound by residues from the C-terminal α domain and is situated between this domain and the N-terminal β domain. Remarkably, the model reveals that the C- terminal cysteine residue (Cys 458), which is conserved among the type 2 L-serine dehydratases, functions as a fourth ligand to the iron−sulfur cluster producing a “tail in mouth” configuration. The interaction of the sulfhydryl group of Cys 458 with the fourth iron of the cluster appears to mimic the position that the substrate would adopt prior to catalysis. A number of highly conserved or invariant residues found in the β domain are clustered around the iron−sulfur center.
    [Show full text]