Chapter 14 Covalent Bonding: Orbitals 541
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Topological Analysis of the Metal-Metal Bond: a Tutorial Review Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L
Topological analysis of the metal-metal bond: A tutorial review Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L. Kahn, Bernard Silvi To cite this version: Christine Lepetit, Pierre Fau, Katia Fajerwerg, Myrtil L. Kahn, Bernard Silvi. Topological analysis of the metal-metal bond: A tutorial review. Coordination Chemistry Reviews, Elsevier, 2017, 345, pp.150-181. 10.1016/j.ccr.2017.04.009. hal-01540328 HAL Id: hal-01540328 https://hal.sorbonne-universite.fr/hal-01540328 Submitted on 16 Jun 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Topological analysis of the metal-metal bond: a tutorial review Christine Lepetita,b, Pierre Faua,b, Katia Fajerwerga,b, MyrtilL. Kahn a,b, Bernard Silvic,∗ aCNRS, LCC (Laboratoire de Chimie de Coordination), 205, route de Narbonne, BP 44099, F-31077 Toulouse Cedex 4, France. bUniversité de Toulouse, UPS, INPT, F-31077 Toulouse Cedex 4, i France cSorbonne Universités, UPMC, Univ Paris 06, UMR 7616, Laboratoire de Chimie Théorique, case courrier 137, 4 place Jussieu, F-75005 Paris, France Abstract This contribution explains how the topological methods of analysis of the electron density and related functions such as the electron localization function (ELF) and the electron localizability indicator (ELI-D) enable the theoretical characterization of various metal-metal (M-M) bonds (multiple M-M bonds, dative M-M bonds). -
No Rabbit Ears on Water. the Structure of the Water Molecule
No Rabbit Ears on Water The Structure of the Water Molecule: What Should We Tell the Students? Michael Laing University of Natal. Durban, South Africa In the vast majority of high school (I)and freshman uni- He also considers the possibility of s character in the bond- versity (2) chemistry textbooks, water is presented as a bent ing orbitals of OF2 and OH2 to improve the "strength" of the molecule whose bonding can be described bv the Gilles~ie- orbital (p 111) from 1.732 for purep to 2.00 for the ideal sp3. Nyholm approach with the oxygen atomsp3 Gyhridized. The Inclusion of s character in the hybrid will be "resisted in the lone uairs are said to he dominant causine the H-O-H anele case of atoms with an nnshared pair.. in the s orbital, to beieduced from the ideal 1091120to 104' and are regul&ly which is more stable than the p orbitals" (p 120). Estimates shown as equivalent in shape and size even being described of the H-E-H angle range from 91.2 for AsH3 to 93.5O for as "rabbit ears" (3). Chemists have even been advised to Hz0. He once again ascribes the anomalies for Hz0 to "re- wear Mickey Mouse ears when teaching the structure and uulsion of the charzes of the hvdroaeu atoms" (D 122). bonding of the H20molecule, presumably to emphasize the - In his famous hook (6)~itac~oro&kii describks the bond- shape of the molecule (and possibly the two equivalent lone ing in water and HzS (p 10). -
Introduction to Aromaticity
Introduction to Aromaticity Historical Timeline:1 Spotlight on Benzene:2 th • Early 19 century chemists derive benzene formula (C6H6) and molecular mass (78). • Carbon to hydrogen ratio of 1:1 suggests high reactivity and instability. • However, benzene is fairly inert and fails to undergo reactions that characterize normal alkenes. - Benzene remains inert at room temperature. - Benzene is more resistant to catalytic hydrogenation than other alkenes. Possible (but wrong) benzene structures:3 Dewar benzene Prismane Fulvene 2,4- Hexadiyne - Rearranges to benzene at - Rearranges to - Undergoes catalytic - Undergoes catalytic room temperature. Faraday’s benzene. hydrogenation easily. hydrogenation easily - Lots of ring strain. - Lots of ring strain. - Lots of ring strain. 1 Timeline is computer-generated, compiled with information from pg. 594 of Bruice, Organic Chemistry, 4th Edition, Ch. 15.2, and from Chemistry 14C Thinkbook by Dr. Steven Hardinger, Version 4, p. 26 2 Chemistry 14C Thinkbook, p. 26 3 Images of Dewar benzene, prismane, fulvene, and 2,4-Hexadiyne taken from Chemistry 14C Thinkbook, p. 26. Kekulé’s solution: - “snake bites its own tail” (4) Problems with Kekulé’s solution: • If Kekulé’s structure were to have two chloride substituents replacing two hydrogen atoms, there should be a pair of 1,2-dichlorobenzene isomers: one isomer with single bonds separating the Cl atoms, and another with double bonds separating the Cl atoms. • These isomers were never isolated or detected. • Rapid equilibrium proposed, where isomers interconvert so quickly that they cannot be isolated or detected. • Regardless, Kekulé’s structure has C=C’s and normal alkene reactions are still expected. - But the unusual stability of benzene still unexplained. -
Symmetry of Three-Center, Four-Electron Bonds†‡
Chemical Science EDGE ARTICLE View Article Online View Journal | View Issue Symmetry of three-center, four-electron bonds†‡ b a c Cite this: Chem. Sci., 2020, 11,7979 Ann Christin Reiersølmoen, § Stefano Battaglia, § Sigurd Øien-Ødegaard, Arvind Kumar Gupta, d Anne Fiksdahl,b Roland Lindh a and Mate Erdelyi *a All publication charges for this article ´ ´ ´ have been paid for by the Royal Society of Chemistry Three-center, four-electron bonds provide unusually strong interactions; however, their nature remains ununderstood. Investigations of the strength, symmetry and the covalent versus electrostatic character of three-center hydrogen bonds have vastly contributed to the understanding of chemical bonding, whereas the assessments of the analogous three-center halogen, chalcogen, tetrel and metallic s^-type long bonding are still lagging behind. Herein, we disclose the X-ray crystallographic, NMR spectroscopic and computational investigation of three-center, four-electron [D–X–D]+ bonding for a variety of cations (X+ ¼ H+,Li+,Na+,F+,Cl+,Br+,I+,Ag+ and Au+) using a benchmark bidentate model system. Formation of a three-center bond, [D–X–D]+ is accompanied by an at least 30% shortening of the D–X Received 11th April 2020 bonds. We introduce a numerical index that correlates symmetry to the ionic size and the electron Accepted 19th June 2020 affinity of the central cation, X+. Providing an improved understanding of the fundamental factors DOI: 10.1039/d0sc02076a Creative Commons Attribution 3.0 Unported Licence. determining bond symmetry on a comprehensive level is expected to facilitate future developments and rsc.li/chemical-science applications of secondary bonding and hypervalent chemistry. -
1 5. Chemical Bonding
5. Chemical Bonding: The Covalent Bond Model 5.1 The Covalent Bond Model Almost all chemical substances are found as aggregates of atoms in the form of molecules and ions produced through the reactions of various atoms of elements except the noble-gas elements which are stable mono-atomic gases. Chemical bond is a term that describes the attractive force that is holding the atoms of the same or different kind of atoms in forming a molecule or ionic solid that has more stability than the individual atoms. Depending on the kinds of atoms participating in the interaction there seem to be three types of bonding: Gaining or Losing Electrons: Ionic bonding: Formed between many ions formed by metal and nonmetallic elements. Sharing Electrons: Covalent bonding: sharing of electrons between two atoms of non-metals. Metallic Bonding: sharing of electrons between many atoms of metals. Ionic Compounds Covalent Compounds Metallic Compounds 1. Metal and non-meal Non-metal and non-meal Metal of one type or, element combinations. elements combinations. combinations of two or metal elements combinations. 2. High melting brittle Gases, liquids, or waxy, low Conducting, high melting, crystalline solids. melting soft solids. malleable, ductile crystalline solids. 3. Do not conduct as a solid Do not conduct electricity at Conduct electricity at solid but conducts electricity any state. and molten states. when molten. 4. Dissolved in water produce Most are soluble in non-polar Insoluble in any type of conducting solutions solvents and few in water. solvents. (electrolytes) and few These solutions are non- are soluble in non-polar conducting (non- solvents. -
Fundamental Studies of Early Transition Metal-Ligand Multiple Bonds: Structure, Electronics, and Catalysis
Fundamental Studies of Early Transition Metal-Ligand Multiple Bonds: Structure, Electronics, and Catalysis Thesis by Ian Albert Tonks In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy CALIFORNIA INSTITUTE OF TECHNOLOGY Pasadena, California 2012 Defended December 6th 2011 ii 2012 Ian A Tonks All Rights Reserved iii ACKNOWLEDGEMENTS I am extremely fortunate to have been surrounded by enthusiastic, dedicated, and caring mentors, colleagues, and friends throughout my academic career. A Ph.D. thesis is by no means a singular achievement; I wish to extend my wholehearted thanks to everyone who has made this journey possible. First and foremost, I must thank my Ph.D. advisor, Prof. John Bercaw. I think more so than anything else, I respect John for his character, sense of fairness, and integrity. I also benefitted greatly from John’s laissez-faire approach to guiding our research group; I’ve always learned best when left alone to screw things up, although John also has an uncanny ability for sensing when I need direction or for something to work properly on the high-vac line. John also introduced me to hiking and climbing in the Eastern Sierras and Owens Valley, which remain amongst my favorite places on Earth. Thanks for always being willing to go to the Pizza Factory in Lone Pine before and after all the group hikes! While I never worked on any of the BP projects that were spearheaded by our co-PI Dr. Jay Labinger, I must also thank Jay for coming to all of my group meetings, teaching me an incredible amount while I was TAing Ch154, and for always being willing to talk chemistry and answer tough questions. -
Chemical Forces Understanding the Relative Melting/Boiling Points of Two
Chapter 8 – Chemical Forces Understanding the relative melting/boiling points of two substances requires an understanding of the forces acting between molecules of those substances. These intermolecular forces are important for many additional reasons. For example, solubility and vapor pressure are governed by intermolecular forces. The same factors that give rise to intermolecular forces (e.g. bond polarity) can also have a profound impact on chemical reactivity. Chemical Forces Internuclear Distances and Atomic Radii There are four general methods of discussing interatomic distances: van der Waal’s, ionic, covalent, and metallic radii. We will discuss the first three in this section. Each has a unique perspective of the nature of the interaction between interacting atoms/ions. Van der Waal's Radii - half the distance between two nuclei of the same element in the solid state not chemically bonded together (e.g. solid noble gases). In general, the distance of separation between adjacent atoms (not bound together) in the solid state should be the sum of their van der Waal’s radii. F F van der Waal's radii F F Ionic Radii – Ionic radii were discussed in Chapter 4 and you should go back and review that now. One further thing is worth mentioning here. Evidence that bonding really exists and is attractive can be seen in ionic radii. For all simple ionic compounds, the ions attain noble gas configurations (e.g. in NaCl the Na+ ion is isoelectronic to neon and the Cl- ion is isoelectronic to argon). For the sodium chloride example just given, van der Waal’s radii would predict (Table 8.1, p. -
The Chemistry of Alkynes
14_BRCLoudon_pgs4-2.qxd 11/26/08 9:04 AM Page 644 14 14 The Chemistry of Alkynes An alkyne is a hydrocarbon containing a carbon–carbon triple bond; the simplest member of this family is acetylene, H C'C H. The chemistry of the carbon–carbon triple bond is similar in many respects toL that ofL the carbon–carbon double bond; indeed, alkynes and alkenes undergo many of the same addition reactions. Alkynes also have some unique chem- istry, most of it associated with the bond between hydrogen and the triply bonded carbon, the 'C H bond. L 14.1 NOMENCLATURE OF ALKYNES In common nomenclature, simple alkynes are named as derivatives of the parent compound acetylene: H3CCC' H L L methylacetylene H3CCC' CH3 dimethylacetyleneL L CH3CH2 CC' CH3 ethylmethylacetyleneL L Certain compounds are named as derivatives of the propargyl group, HC'C CH2 , in the common system. The propargyl group is the triple-bond analog of the allyl group.L L HC' C CH2 Cl H2CA CH CH2 Cl L L LL propargyl chloride allyl chloride 644 14_BRCLoudon_pgs4-2.qxd 11/26/08 9:04 AM Page 645 14.1 NOMENCLATURE OF ALKYNES 645 We might expect the substitutive nomenclature of alkynes to be much like that of alkenes, and it is. The suffix ane in the name of the corresponding alkane is replaced by the suffix yne, and the triple bond is given the lowest possible number. H3CCC' H CH3CH2CH2CH2 CC' CH3 H3C CH2 C ' CH L L L L L L L propyne 2-heptyne 1-butyne H3C CH C ' C CH3 HC' C CH2 CH2 C' C CH3 L L L L 1,5-heptadiyneLL L "CH3 4-methyl-2-pentyne Substituent groups that contain a triple bond (called alkynyl groups) are named by replac- ing the final e in the name of the corresponding alkyne with the suffix yl. -
Chemical Bonding Valence Electrons Are the Outer Shell Electrons of an Atom
Chapter 8 Chemical Bonding Valence electrons are the outer shell electrons of an atom. The valence electrons are the electrons that participate in chemical bonding. Group e- configuration # of valence e- 1 ns1 1 2 ns2 2 13 ns2np1 3 14 ns2np2 4 15 ns2np3 5 16 ns2np4 6 17 ns2np5 7 Lewis Dot Symbols for the Representative Elements & Noble Gases Lewis dot symbol consists of the symbol of the element and one dot for each valence electron in an atom of each element The Ionic Bond Ionic bond = the electrostatic force that holds ions Li + F Li+ F - together in an 2 1 2 2 5 [He]2[Ne]2 2 6 ionic compound 1s 2s1s 2s 2p 1s1s 2s 2p Li Li+ + e- e- + F F - Lithium fluoride, LiF Li+ + F - Li+ F - Ionic Bonds 3Mg (s) + N2 (g) → Mg3N2 (s) .. .. 2 3 3 Mg2 N 3Mg 2: N : (Mg3N2 ) . .. Electrostatic (Lattice) Energy Lattice energy (E) is the energy required to completely separate one mole of a solid ionic compound into gaseous ions. Coulomb’s Law: the potential energy between 2 ions is directly proportional to the product of their charges and inversely proportional to the distance of separation between them Q+ is the charge on the cation Q Q E = k + - Q is the charge on the anion r - r is the distance between the ions cmpd lattice energy MgF2 2957 Q= +2,-1 Lattice energy (E) increases MgO 3938 Q= +2,-2 as Q increases and/or as r decreases. LiF 1036 r F- < r Cl- LiCl 853 Born-Haber Cycle for Determining Lattice Energy The Born-Haber cycle relates lattice energies of ionic compounds to ionization energies, electron affinities, and other atomic & molecular properties o o o o o o DHoverall = DH1 + DH2 + DH3 + DH4 + DH5 Born-Haber cycle for lithium fluoride 1. -
Molecular Orbital Theory to Predict Bond Order • to Apply Molecular Orbital Theory to the Diatomic Homonuclear Molecule from the Elements in the Second Period
Skills to Develop • To use molecular orbital theory to predict bond order • To apply Molecular Orbital Theory to the diatomic homonuclear molecule from the elements in the second period. None of the approaches we have described so far can adequately explain why some compounds are colored and others are not, why some substances with unpaired electrons are stable, and why others are effective semiconductors. These approaches also cannot describe the nature of resonance. Such limitations led to the development of a new approach to bonding in which electrons are not viewed as being localized between the nuclei of bonded atoms but are instead delocalized throughout the entire molecule. Just as with the valence bond theory, the approach we are about to discuss is based on a quantum mechanical model. Previously, we described the electrons in isolated atoms as having certain spatial distributions, called orbitals, each with a particular orbital energy. Just as the positions and energies of electrons in atoms can be described in terms of atomic orbitals (AOs), the positions and energies of electrons in molecules can be described in terms of molecular orbitals (MOs) A particular spatial distribution of electrons in a molecule that is associated with a particular orbital energy.—a spatial distribution of electrons in a molecule that is associated with a particular orbital energy. As the name suggests, molecular orbitals are not localized on a single atom but extend over the entire molecule. Consequently, the molecular orbital approach, called molecular orbital theory is a delocalized approach to bonding. Although the molecular orbital theory is computationally demanding, the principles on which it is based are similar to those we used to determine electron configurations for atoms. -
Polar Covalent Bonds: Electronegativity
Polar Covalent Bonds: Electronegativity Covalent bonds can have ionic character These are polar covalent bonds Bonding electrons attracted more strongly by one atom than by the other Electron distribution between atoms is not symmetrical Bond Polarity and Electronegativity Symmetrical Covalent Bonds Polar Covalent Bonds C – C + - C – H C – O (non-polar) (polar) Electronegativity (EN): intrinsic ability of an atom to attract the shared electrons in a covalent bond Inductive Effect: shifting of sigma bonded electrons in resppygonse to nearby electronegative atom The Periodic Table and Electronegativity C – H C - Br and C - I (non-pol)lar) (po l)lar) Bond Polarity and Inductive Effect Nonpolar Covalent Bonds: atoms with similar EN Polar Covalent Bonds: Difference in EN of atoms < 2 Ionic Bonds: Difference in EN > 2 C–H bonds, relatively nonpolar C-O, C-X bonds (more electronegative elements) are polar Bonding electrons shift toward electronegative atom C acqqppuires partial positive char g,ge, + Electronegative atom acquires partial negative charge, - Inductive effect: shifting of electrons in a bond in response to EN of nearby atoms Electrostatic Potential Maps Electrostatic potential maps show calculated charge distributions Colors indicate electron- rich (red) and electron- poor (blue ) reg ions Arrows indicate direction of bond polarity Polar Covalent Bonds: Net Dipole Moments Molecules as a whole are often polar from vector summation of individual bond polarities and lone-pair contributions Strongly polar substances soluble in polar solvents like water; nonpolar substances are insoluble in water. Dipole moment ( ) - Net molecular polarity, due to difference in summed charges - magnitude of charge Q at end of molecular dipole times distance r between charges = Q r, in debyes (D), 1 D = 3.336 1030 coulomb meter length of an average covalent bond, the dipole moment would be 1.60 1029 Cm, or 4.80 D. -
Heterocycles 2 Daniel Palleros
Heterocycles 2 Daniel Palleros Heterocycles 1. Structures 2. Aromaticity and Basicity 2.1 Pyrrole 2.2 Imidazole 2.3 Pyridine 2.4 Pyrimidine 2.5 Purine 3. Π-excessive and Π-deficient Heterocycles 4. Electrophilic Aromatic Substitution 5. Oxidation-Reduction 6. DNA and RNA Bases 7. Tautomers 8. H-bond Formation 9. Absorption of UV Radiation 10. Reactions and Mutations Heterocycles 3 Daniel Palleros Heterocycles Heterocycles are cyclic compounds in which one or more atoms of the ring are heteroatoms: O, N, S, P, etc. They are present in many biologically important molecules such as amino acids, nucleic acids and hormones. They are also indispensable components of pharmaceuticals and therapeutic drugs. Caffeine, sildenafil (the active ingredient in Viagra), acyclovir (an antiviral agent), clopidogrel (an antiplatelet agent) and nicotine, they all have heterocyclic systems. O CH3 N HN O O N O CH 3 N H3C N N HN N OH O S O H N N N 2 N O N N O CH3 N CH3 caffeine sildenafil acyclovir Cl S N CH3 N N H COOCH3 nicotine (S)-clopidogrel Here we will discuss the chemistry of this important group of compounds beginning with the simplest rings and continuing to more complex systems such as those present in nucleic acids. Heterocycles 4 Daniel Palleros 1. Structures Some of the most important heterocycles are shown below. Note that they have five or six-membered rings such as pyrrole and pyridine or polycyclic ring systems such as quinoline and purine. Imidazole, pyrimidine and purine play a very important role in the chemistry of nucleic acids and are highlighted.