Fibrinogen Like Protein 1 As a Potential Biomarker for Hepatitis B Virus Related Hepatocellular Carcinoma

Total Page:16

File Type:pdf, Size:1020Kb

Fibrinogen Like Protein 1 As a Potential Biomarker for Hepatitis B Virus Related Hepatocellular Carcinoma Fibrinogen Like Protein 1 as a Potential Biomarker for Hepatitis B Virus Related Hepatocellular Carcinoma Cai Xin Renmin Hospital of Wuhan University Tang Dongling Renmin Hospital of Wuhan University Chen Juanjuan Renmin Hospital of Wuhan University Li Huan Renmin Hospital of Wuhan University Hu Yuanhui Renmin Hospital of Wuhan University Zhang Pingan ( [email protected] ) Renmin Hospital of Wuhan University Research Article Keywords: FGL1, AFP, HBV, HCC, Biomarker, Diagnosis Posted Date: August 19th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-741807/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/13 Abstract Background There is an urgent need for new serum biomarkers for early screening of HBV-related hepatocellular carcinoma (HCC). Fibrinogen like protein 1 (FGL1) may develop the potential diagnostic value of alpha fetoprotein (AFP) in HBV-related HCC. Methods The TCGA database was used to screen out genes related to liver cancer and perform differential expression analysis. Enzyme-linked immunosorbent assay and chemiluminescence immunoassay were used to detect concentrations of FGL1 and AFP. Using immunouorescence semi-quantitative method to detect the mean uorescence intensity of FGL1. Result FGL1 is lower in tumor tissues than in normal tissues. The serum levels of FGL1 and AFP in patients with HBV-related HCC are signicantly higher than others for each group. Compared with other groups, the area under the receiver operating curve (AUC) of FGL1 is higher than that of AFP when compared with the normal group, and the AUC of other groups is lower than that of AFP. The combination of the two can increase the AUC to 0.862 (95%CI, 0.786 ~ 0.918) in distinguishing benign liver disease from HBV-related HCC. The specicity of FGL1 and AFP in the diagnosis of HBV-related HCC is 98.39% and 70.97%, respectively. The specicity of the combination was 93.55%. In distinguishing the A and B stages in the BCLC staging, the combination of the two increased the AUC from 0.584 to 0.647. When distinguishing benign liver disease from HBV-related HCC, the AUC of FGL1 reached 0.849, with a specicity of 100%. Conclusion FGL1 can be used as a non-invasive biomarker for HCC. When combined with AFP, the diagnostic eciency and specicity were improved. 1. Background Globally, primary hepatocellular carcinoma (HCC) is the sixth most common cancer and the third leading cause of cancer death, with approximately 906,000 new cases and 830,000 deaths [1]. Hepatitis B virus (HBV) accounts for half of the global viral hepatitis deaths, half of all liver cancer deaths and one third of all liver cirrhosis deaths [2]. In China, HBV infection accounts for 63% of the total deaths from cirrhosis and other chronic liver diseases, and 53% of the total deaths from liver cancer. China is the country with the largest number of hepatitis B and C virus infections in the world [3]. Although China vigorously popularizes hepatitis B vaccine injection, it is estimated that there are still 77 to 97 million chronic HBV infections, of which more than 20 to 30 million are in active liver disease [4], and about 7 million develop cirrhosis or liver cells Cancer [5]. Although the diagnosis and treatment of HCC have made great progress in recent years, it still cannot change the fact that most of the conrmed cases of HBV-related HCC are in the middle and late stages, and the metastasis and recurrence of HCC have led to no signicant improvement in the ve-year survival rate of patients. So far, Alpha fetoprotein (AFP) has been widely used in the laboratory for early screening of HBV-related HCC, but its diagnostic value still needs to be improved. Some HCC patients express low level AFP and cause AFP negative. The commonly used positive cut-off value is AFP≥ 20 ng / ml [6]. Therefore, there is an urgent need for new serum biomarkers for early screening of HBV-related HCC. Advances in bioinformatics and the development of high-throughput sequencing have surfaced some tumor markers. For example, it found that GBP5 gene is highly correlated with immune inltration [7]. DPP9 plays an important role in the pathogenesis of human HCC [8]. The appearance of these tumor markers is helpful for the diagnosis of tumors. In this study, immune-related biomarkers were screened in order to nd markers related to HCC. FGL1 contains a brinogen related domain in its C-terminal portion, which is similar to tenascins, broleukin, angiopoietins, brinogen β and γ chains[9]. The difference is that FGL1 lack of brinogen’s three functional domains, such as the platelet binding-site, the cross- linking region and the thrombin-sensitive site. It is regarded as an acute phase reactant which is secreted by liver [10]. 2. Materials And Methods 2.1 Oncolnc Database Analysis OncoLnc (http://www.oncolnc.org/) contains survival data from 8,647 patients and 21 cancer studies conducted by the Cancer Genome Atlas (TCGA), as well as mRNA and miRNA RNA-SEQ expression from TCGA, and from the lncRNA expression of MiTranscriptome beta. Use OncoLnc for hepatocellular carcinoma-related gene screening. 2.2 GEPIA Database Analysis Page 2/13 GEPIA (Gene Expression Proling Interactive Analysis) (http://www.oncolnc.org/) has always been a valuable and highly cited resource for gene expression analysis based on tumor and normal samples from TCGA and GTEx databases. Contains RNA sequencing data based on 9,736 tumor samples and 8,587 normal samples from TCGA and GTEx databases. We use Plotly to organize and plot GEPIA data. 2.3 Research Object Selection The proportion of males in HCC patients in China is higher than that of female patients, so this part of study only included male patients. On the other hand, it also controlled for the interfering factors brought by gender variables. All patients were recruited in the Department of Oncology, Department of Infectious Diseases and Physical Examination Center, Renmin Hospital of Wuhan University, Hubei Province, China from April 2021 to June 2021. According to the guidelines of the Chinese Society of Hepatology, the Chinese Society of Infectious Diseases and the Chinese Medical Association[11], all 153 patients and normal controls were divided into HBV-related HCC group (55 cases), HBV-infected liver cirrhosis (LC) group (31 cases), and chronic hepatitis B (CHB) group (31 cases) and the control group of healthy people (HC) (36 cases). The pathological tissues of liver cancer patients in the Department of Oncology, Renmin Hospital of Wuhan University, Hubei Province, China from April 2021 to June 2021 were collected. According to relevant guidelines, they were divided into HCC group (4 cases) and normal population control group (3 cases). All HCC patients were conrmed by liver pathological examination, X-ray examination or MRI examination. Exclusion criteria for included cases: (1) Exclude malignant tumors other than primary liver cancer. (2) Exclude other hepatitis virus infections other than HBV. (3) Exclude diseases such as severe diabetes, hyperthyroidism, and cardiovascular disease. (4) Exclude pregnant patients. All normal control populations tested negative for HBV, HCV, syphilis and HIV as well as all biochemical tests were normal. This study has been reviewed and approved by the Medical Ethics Review Committee of Renmin Hospital, Wuhan University. According to the requirements of the Medical Ethics Review Committee of Renmin Hospital, Wuhan University, all the included persons agreed and signed the informed consent form. 2.4 Sample Collection Venous blood was collected from patients who had been fasted for more than 8 hours in the morning, centrifuged at 3500/rpm for 15 minutes at room temperature, and transferred the serum from the collection tube with separating gel to the cryotube, and stored it at -80°C for further use. Blood was collected using an anticoagulant tube, immediately reversed and mixed, centrifuged after several minutes, and plasma was collected. We use 10% paraformaldehyde to x the fresh tissue, use gradient concentration of alcohol to dehydrate the tissue block, and then immerse it in xylene. After the tissue block is transparent, it is immersed in paran for embedding and sectioning, and stored at room temperature. 2.5 Laboratory Analysis Alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP),γ-glutamyl transpeptidase (γ-GT), albumin (ALB), total bilirubin (TBIL), hypersensitive C-reactive protein (hs-CRP) and direct bilirubin (DBIL) was analyzed by enzymatic method using the fully automatic biochemical analyzer ADVIA 2400 (Siemens, Germany). SysmexCA-7000 (Kobe, Japan) was used to detect brinogen (FIB) and d-dimer. We use ABI ViiA7 real-time uorescent quantitative polymerase chain reaction system (ABI, America) to detect HBV DNA. AFP was detected using Siemens ADVIA Centaur XP (Siemens, Germany). We use a commercial enzyme-linked immunosorbent assay (ELISA) kit (product number JL47875) produced by Jianglai Biological Company to detect FGL1. The kit uses a double-antibody one-step sandwich method for enzyme-linked immunosorbent assay. The detection range is 46.875pg/ml~1500pg/ml, and the specimens were diluted 100 times for testing, and the auxiliary hole is set to ensure the detection accuracy. 2.6 Immunouorescence Quantication Purchase the FGL1 antibody (Cat. No.: 67391-1-Ig) produced by Proteintech Group, and entrust Siwega Biotechnology (Wuhan) to perform immunouorescence quantitative experiments. 2.7 Data Analysis The experimental data was analyzed using SPSS version 20.0 (IBM Corp, NY) and MedCal 15.2.2 (Ostend, Belgium), GraphPad Prism 6.0 (GraphPad Software, Inc, La Jolla, CA) was used for image rendering, and Image J 1.53J (National Institutes of Health, Bethesda) for immunouorescence quantitative analysis. The measurement data uses the single-sample Kolmogorov-Smirnov method to test whether the data of each group conforms to normality, the normal distribution data is represented by ±s, the comparison between multiple groups is performed by analysis of variance, and the further pairwise comparison is performed by LSD-t test.
Recommended publications
  • LAG-3: from Molecular Functions to Clinical Applications
    Open access Review J Immunother Cancer: first published as 10.1136/jitc-2020-001014 on 13 September 2020. Downloaded from LAG-3: from molecular functions to clinical applications Takumi Maruhashi , Daisuke Sugiura , Il- mi Okazaki , Taku Okazaki To cite: Maruhashi T, Sugiura D, ABSTRACT (PD-1) and cytotoxic T lymphocyte antigen Okazaki I, et al. LAG-3: from To prevent the destruction of tissues owing to excessive 4 (CTLA-4) significantly improved the molecular functions to clinical and/or inappropriate immune responses, immune outcomes of patients with diverse cancer applications. Journal for cells are under strict check by various regulatory ImmunoTherapy of Cancer types, revolutionizing cancer treatment. The mechanisms at multiple points. Inhibitory coreceptors, 2020;8:e001014. doi:10.1136/ success of these therapies verified that inhib- including programmed cell death 1 (PD-1) and cytotoxic jitc-2020-001014 itory coreceptors serve as critical checkpoints T lymphocyte antigen 4 (CTLA-4), serve as critical checkpoints in restricting immune responses against for immune cells to not attack the tumor Accepted 29 July 2020 self- tissues and tumor cells. Immune checkpoint inhibitors cells as well as self-tissues. However, response that block PD-1 and CTLA-4 pathways significantly rates are typically lower and immune-related improved the outcomes of patients with diverse cancer adverse events (irAEs) are also observed in types and have revolutionized cancer treatment. However, patients administered with immune check- response rates to such therapies are rather limited, and point inhibitors. This is indicative of the immune-rela ted adverse events are also observed in a continued need to decipher the complex substantial patient population, leading to the urgent need biology of inhibitory coreceptors to increase for novel therapeutics with higher efficacy and lower response rates and prevent such unwanted toxicity.
    [Show full text]
  • Cytogenetic and Molecular Genetic Alterations in Hepatocellular Carci- Noma
    Acta Pharmacologica Sinica 2005 Jun; 26 (6): 659–665 Invited review Cytogenetic and molecular genetic alterations in hepatocellular carci- noma Sze-hang LAU, Xin-yuan GUAN1 Department of Clinical Oncology, Faculty of Medicine, The University of Hong Kong, Hong Kong, China Key words Abstract hepatocellular carcinoma; chromosome Specific chromosome aberrations are frequently detected during the development aberrations; oncogenes; tumor suppressor of hepatocellular carcinoma. Molecular cytogenetic approaches such as com- genes parative genomic hybridization and loss of heterozygosity analyses have pro- vided fruitful information on changes in HCC cases at the genomic level. Map- 1 Correspondence to Dr Xin-yuan GUAN. ping of chromosome gains and losses have frequently resulted in the identifica- Fax 852-2816-9126. E-mail [email protected] tion of oncogenes and tumor suppressors, respectively. In this review, we sum- marize some frequently detected chromosomal aberrations reported for hepatocel- Received 2005-02-17 lular carcinoma cases using comparative genomic hybridization and loss of het- Accepted 2005-03-25 erozygosity studies. Focus will be on gains of 1q, 8q, and 20q, and losses of 4q, doi: 10.1111/j.1745-7254.2005.00126.x 8p, 13q, 16q, and 17p. We then examine the candidate oncogenes and tumor suppressors located within these regions, and explore their possible functions in hepatocarcinogenesis. Finally, the impact of microarray-based screening platforms will be discussed. Introduction based on the observation of chromosome deletion del(13) (q14) in retinoblastoma[6] and the proto-oncogene myc was Hepatocellular carcinoma (HCC) is one of the most com- shown to be involved in the chromosome translocation t(8; mon human malignant neoplasms, with a particularly high 14) in human Burkett’s lymphoma[7].
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • New Ligand for LAG-3 Vaccine Responses
    research highlights TRM CELLS In Cell, Chen and colleagues identify the dependent insulinotropic polypeptide Tissue adaptation fibrinogen family protein FGL1 as a major (GIP) signaling and the suppression Science https://doi.org/10.1126/science.aat6280 ligand for LAG-3. The FGL1–LAG-3 of myeloid cell inflammatory responses. (2018) interaction is conserved in human and Mice that lack expression of the GIP mouse, is specific to FGL1, involves the receptor specifically in myeloid cells Commensals and commensal-reactive fibrinogen-like domain of FGL1 and exhibit excessive weight gain, impaired the D1-D2 domain of LAG-3 and is glucose tolerance and dysregulation lymphocytes coexist at barrier tissues. In –/– Science, Belkaid and colleagues show that independent of MHC class II. Fgl1 mice of cold-induced adaptive thermogenesis develop spontaneous autoimmunity with when fed a high-fat diet. Lack of skin-resident commensal-specific T cells –/– –/– express a type 17 program associated with age. Similar to Lag3 mice, Fgl1 mice the GIP receptor leads to increased a poised type 2 program. Staphylococcus control the growth of inoculated tumors expression of the alarmin S100A8 epidermis–colonized mice develop long- better than wild-type mice do, in a manner by fat-resident myeloid cells. This + + lived, tissue-resident, S. epidermis–specific dependent on CD8 T cells and CD4 scenario leads to greater myelopoiesis, + T cells. Antibodies to LAG-3 are not neutrophilia and recruitment of CD8 memory T cells. S. epidermis–elicited –/– + + + + protective against tumors in the Fgl1 myeloid cells to fat depots than RORγ t CD4 TH17 cells and RORγ t CD8 Tc17 cells produce the type 2 cytokines IL-5 mice.
    [Show full text]
  • Development and Characterization of Immunogenic Genetically Engineered Mouse Models of Pancreatic Cancer
    Development and characterization of immunogenic genetically engineered mouse models of pancreatic cancer By Laurens J. Lambert MSc, Medical Biology Radboud University, 2014 Submitted to the Department of Biology in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the MASSACHUSETTS INSTITUTE OF TECHNOLOGY September 2020 © 2020 Massachusetts Institute of Technology. All rights reserved. Signature of Author………………………………………………………………………………. Laurens J. Lambert Department of Biology June 16, 2020 Certified by………..………………………………………………………………………………. Tyler Jacks David H. Koch Professor of Biology Investigator, Howard Hughes Medical Institute Thesis Supervisor Accepted by………………………………………………………………………………………. Stephen Bell Uncas and Helen Whitaker Professor of Biology Investigator, Howard Hughes Medical Institute Co-Director, Biology Graduate Committee 2 Development and characterization of immunogenic genetically engineered mouse models of pancreatic cancer By Laurens J. Lambert Submitted to the Department of Biology on June 16, 2020 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology Abstract Insights into mechanisms of immune escape have fueled the clinical success of immunotherapy in many cancers. However, pancreatic cancer has remained largely refractory to checkpoint immunotherapy. To uncover mechanisms of immune escape, we have characterized two preclinical models of immunogenic pancreatic ductal adenocarcinoma (PDAC). In order to dissect the endogenous antigen-specific T cell response in PDAC, lentivirus encoding the Cre recombinase and a tumor specific antigen LSL-G12D/+; flox/flox (SIINFEKL, OVA257-264) was delivered to Kras Trp53 (KP) mice. We demonstrate that KP tumors show distinct antigenic outcomes: a subset of PDAC tumors undergoes clearance or editing by a robust antigen-specific CD8+ T cell response, while a fraction undergo immune escape.
    [Show full text]
  • Investigation of the Association Between FGL1 Expression and Prognosis in Gastric Cancer Patients Mahnaz Saremi1*, Leila Moezzi2
    http://pmjournal.ir Original Article Autumn 2020, Volume 5, Issue 19 (7-9) Investigation of the Association between FGL1 Expression and Prognosis in Gastric Cancer Patients Mahnaz Saremi1*, Leila Moezzi2 1 Reference Health Laboratory, Ministry of Health and Medical Education 2 Department of Cellular and Molecular, Faculty of Life Sciences, North Tehran Branch, Islamic Azad University, Faculty of Biological Sciences, Tehran, Iran 2 Personalized Medicine Research Center of AmitisGen, Tehran, Iran *Corresponding author: Mahnaz Saremi, Reference Health Laboratory, Ministry of Health and Medical DOI: 10.22034/pmj.2020.240044 Education. Email: :[email protected] Submitted: 2020/05/23 Abstract Accepted: 2020/07/19 Gastric cancer is the fourth most common cancer worldwide, and it ranks second leading Keywords: cause of cancer deaths. Several studies have shown that FGL2 contributes to the patho- Gastric cancer genesis of a number of infectious diseases. However, little is known about its biological FGL2 gene functions in cancer development and metastasis. In this study, the association between gene expression FGL1 expression and prognosis was investigated in GC patients. Gastric cancer and ad- qPCR jacent normal tissues (n=20) were obtained from patients diagnosed with gastric cancer aged between 30 and 50. Total RNA was extracted, reverse transcription and qPCR were ©2020.Personalized Medicine Journal performed, and Relative expression level was calculated using the 2-∆∆Cq method. It was found that FGL1 expression in gastric cancer tissues was obviously higher than adjacent tissues at mRNA levels (P<0.003). IntroductIon effector molecule of Treg cells and plays a critical Gastric cancer is the fourth most common role in regulating innate immunity and adaptive cancer worldwide, and it ranks as the second immunity [7].
    [Show full text]
  • The Role of Fibrinogen-Like Proteins in Cancer
    The Role of Fibrinogen-Like Proteins in Cancer Jing Yu1,2#, Jing Li 3#, Jing Shen1,2, Fukuan Du1,2, Xu Wu1,2, Mingxing Li1,2, Yu Chen1,2, Chi Hin Cho1,2, Xiaobing Li1*, Zhangang Xiao1,2*, Yueshui Zhao1,2* 1. Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan, China 2. South Sichuan Institute of Translational Medicine, Luzhou, Sichuan, China 3. Department of Oncology and Hematology, Hospital (T.C.M) Affiliated to Southwest Medical University, Luzhou, Sichuan, China. # These Authors Contributed Equally to This Work. *Addresses for Correspondent Authors: Yueshui Zhao, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan 646000, China; E-mail: [email protected] Zhangang Xiao, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan 646000, China; E-mail: [email protected] Xiaobing Li, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan 646000, China; E-mail: [email protected] 1 Abstract Fibrinogen-associated protein (FREP) family is a family of proteins with a fibrin domain at the carboxyl terminus. Recent investigations illustrated that two members of FREP family, fibrinogen-like protein-1 (FGL1) and fibrinogen-like protein-2 (FGL2), play crucial roles in cancer by regulating the proliferation, invasion, and migration of tumor cells, or regulating the functions of immune cells in tumor microenvironment. Meanwhile, they are potential targets for medical intervention of tumor development. In this review, we discussed the structure, and the roles of FGL1 and FGL2 in tumors, especially the roles in regulating immune cell functions.
    [Show full text]
  • The Role of Fibrinogen-Like Proteins in Cancer
    Int. J. Biol. Sci. 2021, Vol. 17 1079 Ivyspring International Publisher International Journal of Biological Sciences 2021; 17(4): 1079-1087. doi: 10.7150/ijbs.56748 Review The role of Fibrinogen-like proteins in Cancer Jing Yu1,2#, Jing Li3#, Jing Shen1,2, Fukuan Du1,2, Xu Wu1,2, Mingxing Li1,2, Yu Chen1,2, Chi Hin Cho1,2, Xiaobing Li1, Zhangang Xiao1,2 and Yueshui Zhao1,2,4 1. Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan, China. 2. South Sichuan Institute of Translational Medicine, Luzhou, Sichuan, China. 3. Department of Oncology and Hematology, Hospital (T.C.M) Affiliated to Southwest Medical University, Luzhou, Sichuan, China. 4. Department of Pharmacy, The Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan, China. # These authors contributed equally to this work. Corresponding authors: Yueshui Zhao, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University; South Sichuan Institute of Translational Medicine; Department of Pharmacy, The Affiliated Hospital of Southwest Medical University; Luzhou, Sichuan 646000, China. E-mail: [email protected]; Zhangang Xiao, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University; South Sichuan Institute of Translational Medicine; Luzhou, Sichuan 646000, China. E-mail: [email protected]; Xiaobing Li, Laboratory of Molecular Pharmacology, Department of Pharmacology, School of Pharmacy, Southwest Medical University, Luzhou, Sichuan 646000, China. E-mail: [email protected]. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
    [Show full text]
  • FGL1 CRISPR/Cas9 KO Plasmid (M): Sc-433343
    SANTA CRUZ BIOTECHNOLOGY, INC. FGL1 CRISPR/Cas9 KO Plasmid (m): sc-433343 BACKGROUND APPLICATIONS The Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) and FGL1 CRISPR/Cas9 KO Plasmid (m) is recommended for the disruption of CRISPR-associated protein (Cas9) system is an adaptive immune response gene expression in mouse cells. defense mechanism used by archea and bacteria for the degradation of foreign genetic material (4,6). This mechanism can be repurposed for other 20 nt non-coding RNA sequence: guides Cas9 functions, including genomic engineering for mammalian systems, such as to a specific target location in the genomic DNA gene knockout (KO) (1,2,3,5). CRISPR/Cas9 KO Plasmid products enable the U6 promoter: drives gRNA scaffold: helps Cas9 identification and cleavage of specific genes by utilizing guide RNA (gRNA) expression of gRNA bind to target DNA sequences derived from the Genome-scale CRISPR Knock-Out (GeCKO) v2 library developed in the Zhang Laboratory at the Broad Institute (3,5). Termination signal Green Fluorescent Protein: to visually REFERENCES verify transfection CRISPR/Cas9 Knockout Plasmid CBh (chicken β-Actin 1. Cong, L., et al. 2013. Multiplex genome engineering using CRISPR/Cas hybrid) promoter: drives systems. Science 339: 819-823. 2A peptide: expression of Cas9 allows production of both Cas9 and GFP from the 2. Mali, P., et al. 2013. RNA-guided human genome engineering via Cas9. same CBh promoter Science 339: 823-826. Nuclear localization signal 3. Ran, F.A., et al. 2013. Genome engineering using the CRISPR-Cas9 system. Nuclear localization signal SpCas9 ribonuclease Nat. Protoc. 8: 2281-2308.
    [Show full text]
  • A Cluster of Cooperating Tumor-Suppressor Gene Candidates in Chromosomal Deletions
    A cluster of cooperating tumor-suppressor gene candidates in chromosomal deletions Wen Xuea,1,2, Thomas Kitzinga,1,3, Stephanie Roesslerb, Johannes Zubera, Alexander Krasnitza, Nikolaus Schultzc, Kate Revilla, Susann Weissmuellerd,3, Amy R. Rappaporta, Janelle Simona,e,3, Jack Zhanga, Weijun Luoa, James Hicksa, Lars Zendera,4, Xin Wei Wangb, Scott Powersa, Michael Wiglera,5, and Scott W. Lowea,e,3,5 aCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; bLaboratory of Human Carcinogenesis, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892; cComputational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY 10065; dWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724; and eHoward Hughes Medical Institute, Memorial Sloan-Kettering Cancer Center, New York, NY 10065 Contributed by Michael Wigler, April 12, 2012 (sent for review January 13, 2012) The large chromosomal deletions frequently observed in cancer the extent of chromosome 8p deletions from cancer genome genomes are often thought to arise as a “two-hit” mechanism in the datasets derived from array-based comparative genomic hybrid- process of tumor-suppressor gene (TSG) inactivation. Using a murine ization (aCGH) performed at Cold Spring Harbor Laboratory and model system of hepatocellular carcinoma (HCC) and in vivo RNAi, the Cancer Genome Atlas (TCGA) project, totaling 1411 primary we test an alternative hypothesis, that such deletions can arise from tumor samples and cell lines of HCC and breast, colon, and lung selective pressure to attenuate the activity of multiple genes. By cancers (Fig. 1A and Materials and Methods). According to these targeting the mouse orthologs of genes frequently deleted on hu- data, approximately half of these tumors harbor heterozygous man 8p22 and adjacent regions, which are lost in approximately deletions of human chromosome 8p, often encompassing a large half of several other major epithelial cancers, we provide evidence portion of or even the entire chromosome arm (Fig.
    [Show full text]
  • Fibrinogen-Like Protein 1 Modulates Sorafenib Resistance in Human Hepatocellular Carcinoma Cells
    International Journal of Molecular Sciences Article Fibrinogen-Like Protein 1 Modulates Sorafenib Resistance in Human Hepatocellular Carcinoma Cells Yeonghoon Son 1,2,†, Na-Rae Shin 1,†, Sung-Ho Kim 3, Su-Cheol Park 4 and Hae-June Lee 1,* 1 Division of Basic Radiation Bioscience, Korea Institute of Radiological & Medical Sciences, Seoul 01812, Korea; [email protected] (Y.S.); [email protected] (N.-R.S.) 2 Primate Resources Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeonbuk 56216, Korea 3 College of Veterinary Medicine, Chonnam National University, Gwangju 61186, Korea; [email protected] 4 Department of Internal Medicine, Korea Cancer Center Hospital, Korea Institute of Radiological and Medical Sciences, Seoul 01812, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-2-970-1638; Fax: +82-2-970-1985 † These authors contributed equally. Abstract: Despite liver cancer being the second-leading cause of cancer-related death worldwide, few systemic drugs have been approved. Sorafenib, the first FDA-approved systemic drug for unre- sectable hepatocellular carcinoma (HCC), is limited by resistance. However, the precise mechanisms underlying this phenomenon are unknown. Since fibrinogen-like 1 (FGL1) is involved in HCC progression and upregulated after anticancer therapy, we investigated its role in regulating sorafenib resistance in HCC. FGL1 expression was assessed in six HCC cell lines (HepG2, Huh7, Hep3B, SNU387, SNU449, and SNU475) using western blotting. Correlations between FGL1 expression and sorafenib resistance were examined by cell viability, colony formation, and flow cytometry Citation: Son, Y.; Shin, N.-R.; Kim, assays. FGL1 was knocked-down to confirm its effects on sorafenib resistance.
    [Show full text]
  • Data Sheet FGL1:LAG3 TR-FRET Assay Kit Catalog #79739-1 Size: 96 Reactions
    6042 Cornerstone Court W, Ste B San Diego, CA 92121 Tel: 1.858.202.1401 Fax: 1.858.481.8694 Email: [email protected] Data sheet FGL1:LAG3 TR-FRET Assay Kit Catalog #79739-1 Size: 96 reactions BACKGROUND: Lymphocyte-activation gene 3 (LAG3, also CD223) is a cell surface receptor that negatively regulates activation and proliferation of T cells. Fibrinogen-like protein 1 (FGL1), a liver-secreted protein, is a functional LAG3 ligand. Blockade of the FGL1-LAG3 interaction is implicated in promoting antitumor immunity. DESCRIPTION: The FGL1:LAG3 TR-FRET Assay is designed to measure the inhibition of LAG3 binding to FGL1 in a homogeneous 96 reaction format. This TR-FRET-based assay requires no time-consuming washing steps, making it especially suitable for high throughput screening applications. The assay procedure is straightforward and simple; a sample containing biotinylated LAG3, His-tagged FGL1 protein, and an inhibitor are incubated for one hour. Then, anti-His Tb donor and dye-labeled acceptor are added and fluorescence intensity is measured using a fluorescence reader COMPONENTS: Catalog # Component Amount Storage 100330 FGL1, His tag 5 µg -80°C LAG3 (CD223), Biotin-labeled 71147 10 µg -80°C (Human) HiP™ Avoid 30017 Anti-His Tb Donor 2 x 10 µl -20°C multiple Dye-labeled Acceptor 2 x 10 µl -20°C freeze/thaw 3x FGL1 TR-FRET Buffer 4 ml -20°C cycles! Room. 79696 White, 96-well microtiter plate 1 temp MATERIALS OR INSTRUMENTS REQUIRED BUT NOT SUPPLIED: Fluroescence microplate reader capable of measuring Time Resolved-Fluorescence Resonance Energy Transfer (TR-FRET) Adjustable micropipettor and sterile tips APPLICATIONS: This kit is useful for screening for inhibitors of LAG3 binding to FGL1.
    [Show full text]