Diploma Thesis Development of a Linux Overlay Filesystem for Software Updates in Embedded Systems
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Lecture 9: Data Storage and IO Models Lecture 9
Lecture 9 Lecture 9: Data Storage and IO Models Lecture 9 Announcements • Submission Project Part 1 tonight • Instructions on Piazza! • PS2 due on Friday at 11:59 pm • Questions? Easier than PS1. • Badgers Rule! Lecture 9 Today’s Lecture 1. Data Storage 2. Disk and Files 3. Buffer Manager - Prelims 3 Lecture 9 > Section 1 1. Data Storage 4 Lecture 9 > Section 1 What you will learn about in this section 1. Life cycle of a query 2. Architecture of a DBMS 3. Memory Hierarchy 5 Lecture 9 > Section 1 Life cycle of a query Query Result Query Database Server Query Execute Parser Optimizer Select R.text from |…|……|………..|………..| Report R, Weather W |…|……|………..|………..| where W.image.rain() Scheduler Operators |…|……|………..|………..| and W.city = R.city |…|……|………..|………..| and W.date = R.date |…|……|………..|………..| and |…|……|………..|………..| R.text. |…|……|………..|………..| matches(“insurance claims”) |…|……|………..|………..| |…|……|………..|………..| |…|……|………..|………..| |…|……|………..|………..| Query Query Syntax Tree Query Plan Result Segments 6 Lecture 9 > Section 1 > Architecture of a DBMS Internal Architecture of a DBMS query Query Execution data access Storage Manager I/O access 7 Lecture 9 > Section 1 > Storage Manager Architecture of a Storage Manager Access Methods Sorted File Hash Index B+-tree Heap File Index Manager Buffer Manager Recovery Manager Concurrency Control I/O Manager IO Accesses In Systems, IO cost matters a ton! 8 Lecture 9 > Section 1 > Data Storage Data Storage • How does a DBMS store and access data? • main memory (fast, temporary) • disk (slow, permanent) • How -
System Calls System Calls
System calls We will investigate several issues related to system calls. Read chapter 12 of the book Linux system call categories file management process management error handling note that these categories are loosely defined and much is behind included, e.g. communication. Why? 1 System calls File management system call hierarchy you may not see some topics as part of “file management”, e.g., sockets 2 System calls Process management system call hierarchy 3 System calls Error handling hierarchy 4 Error Handling Anything can fail! System calls are no exception Try to read a file that does not exist! Error number: errno every process contains a global variable errno errno is set to 0 when process is created when error occurs errno is set to a specific code associated with the error cause trying to open file that does not exist sets errno to 2 5 Error Handling error constants are defined in errno.h here are the first few of errno.h on OS X 10.6.4 #define EPERM 1 /* Operation not permitted */ #define ENOENT 2 /* No such file or directory */ #define ESRCH 3 /* No such process */ #define EINTR 4 /* Interrupted system call */ #define EIO 5 /* Input/output error */ #define ENXIO 6 /* Device not configured */ #define E2BIG 7 /* Argument list too long */ #define ENOEXEC 8 /* Exec format error */ #define EBADF 9 /* Bad file descriptor */ #define ECHILD 10 /* No child processes */ #define EDEADLK 11 /* Resource deadlock avoided */ 6 Error Handling common mistake for displaying errno from Linux errno man page: 7 Error Handling Description of the perror () system call. -
Study of File System Evolution
Study of File System Evolution Swaminathan Sundararaman, Sriram Subramanian Department of Computer Science University of Wisconsin {swami, srirams} @cs.wisc.edu Abstract File systems have traditionally been a major area of file systems are typically developed and maintained by research and development. This is evident from the several programmer across the globe. At any point in existence of over 50 file systems of varying popularity time, for a file system, there are three to six active in the current version of the Linux kernel. They developers, ten to fifteen patch contributors but a single represent a complex subsystem of the kernel, with each maintainer. These people communicate through file system employing different strategies for tackling individual file system mailing lists [14, 16, 18] various issues. Although there are many file systems in submitting proposals for new features, enhancements, Linux, there has been no prior work (to the best of our reporting bugs, submitting and reviewing patches for knowledge) on understanding how file systems evolve. known bugs. The problems with the open source We believe that such information would be useful to the development approach is that all communication is file system community allowing developers to learn buried in the mailing list archives and aren’t easily from previous experiences. accessible to others. As a result when new file systems are developed they do not leverage past experience and This paper looks at six file systems (Ext2, Ext3, Ext4, could end up re-inventing the wheel. To make things JFS, ReiserFS, and XFS) from a historical perspective worse, people could typically end up doing the same (between kernel versions 1.0 to 2.6) to get an insight on mistakes as done in other file systems. -
ECE 598 – Advanced Operating Systems Lecture 19
ECE 598 { Advanced Operating Systems Lecture 19 Vince Weaver http://web.eece.maine.edu/~vweaver [email protected] 7 April 2016 Announcements • Homework #7 was due • Homework #8 will be posted 1 Why use FAT over ext2? • FAT simpler, easy to code • FAT supported on all major OSes • ext2 faster, more robust filename and permissions 2 btrfs • B-tree fs (similar to a binary tree, but with pages full of leaves) • overwrite filesystem (overwite on modify) vs CoW • Copy on write. When write to a file, old data not overwritten. Since old data not over-written, crash recovery better Eventually old data garbage collected • Data in extents 3 • Copy-on-write • Forest of trees: { sub-volumes { extent-allocation { checksum tree { chunk device { reloc • On-line defragmentation • On-line volume growth 4 • Built-in RAID • Transparent compression • Snapshots • Checksums on data and meta-data • De-duplication • Cloning { can make an exact snapshot of file, copy-on- write different than link, different inodles but same blocks 5 Embedded • Designed to be small, simple, read-only? • romfs { 32 byte header (magic, size, checksum,name) { Repeating files (pointer to next [0 if none]), info, size, checksum, file name, file data • cramfs 6 ZFS Advanced OS from Sun/Oracle. Similar in idea to btrfs indirect still, not extent based? 7 ReFS Resilient FS, Microsoft's answer to brtfs and zfs 8 Networked File Systems • Allow a centralized file server to export a filesystem to multiple clients. • Provide file level access, not just raw blocks (NBD) • Clustered filesystems also exist, where multiple servers work in conjunction. -
Portace Na Jin´E Os
VYSOKEU´ CENˇ ´I TECHNICKE´ V BRNEˇ BRNO UNIVERSITY OF TECHNOLOGY FAKULTA INFORMACNˇ ´ICH TECHNOLOGI´I USTAV´ INFORMACNˇ ´ICH SYSTEM´ U˚ FACULTY OF INFORMATION TECHNOLOGY DEPARTMENT OF INFORMATION SYSTEMS REDIRFS - PORTACE NA JINE´ OS PORTING OF REDIRFS ON OTHER OS DIPLOMOVA´ PRACE´ MASTER’S THESIS AUTOR PRACE´ Bc. LUKA´ Sˇ CZERNER AUTHOR VEDOUC´I PRACE´ Ing. TOMA´ Sˇ KASPˇ AREK´ SUPERVISOR BRNO 2010 Abstrakt Tato pr´acepopisuje jak pˇr´ıpravu na portaci, tak samotnou portaci Linuxov´ehomodulu RedirFS na operaˇcn´ısyst´emFreeBSD. Jsou zde pops´any z´akladn´ırozd´ılypˇr´ıstupuk Lin- uxov´emu a FreeBSD j´adru,d´alerozd´ılyv implementaci, pro RedirFS z´asadn´ı,ˇc´astij´adra a sice VFS vrstvy. D´alezkoum´amoˇznostia r˚uzn´epˇr´ıstupy k implementaci funkcionality linuxov´ehoRedirFS na operaˇcn´ımsyst´emu FreeBSD. N´aslednˇejsou zhodnoceny moˇznostia navrˇzenide´aln´ıpostup portace. N´asleduj´ıc´ıkapitoly pak popisuj´ıpoˇzadovanou funkcional- itu spolu s navrhovanou architekturou nov´ehomodulu. D´aleje detailnˇepops´ann´avrha implementace nov´ehomodulu tak, aby mˇelˇcten´aˇrjasnou pˇredstavu jak´ymzp˚usobem modul implementuje poˇzadovanou funkcionalitu. Abstract This thesis describes preparation for porting as well aw porting itself of RedirFS Linux kernel module to FreeBSD. Basic differences between Linux and FreeBSD kernels are de- scribed as well as differences in implementation of the Virtual Filesystem, crucial part for RedirFS. Further there are described possibilities and different approaches to implemen- tation RedirFS functionality to FreeBSD. Then, the possibilities are evaluated and ideal approach is proposed. Next chapters introduces erquired functionality of the new module as well as its solutions. Then the implementation details are describet so the reader can very well understand how the new module works and how the required functionality is implemented into the module. -
Ext4 File System and Crash Consistency
1 Ext4 file system and crash consistency Changwoo Min 2 Summary of last lectures • Tools: building, exploring, and debugging Linux kernel • Core kernel infrastructure • Process management & scheduling • Interrupt & interrupt handler • Kernel synchronization • Memory management • Virtual file system • Page cache and page fault 3 Today: ext4 file system and crash consistency • File system in Linux kernel • Design considerations of a file system • History of file system • On-disk structure of Ext4 • File operations • Crash consistency 4 File system in Linux kernel User space application (ex: cp) User-space Syscalls: open, read, write, etc. Kernel-space VFS: Virtual File System Filesystems ext4 FAT32 JFFS2 Block layer Hardware Embedded Hard disk USB drive flash 5 What is a file system fundamentally? int main(int argc, char *argv[]) { int fd; char buffer[4096]; struct stat_buf; DIR *dir; struct dirent *entry; /* 1. Path name -> inode mapping */ fd = open("/home/lkp/hello.c" , O_RDONLY); /* 2. File offset -> disk block address mapping */ pread(fd, buffer, sizeof(buffer), 0); /* 3. File meta data operation */ fstat(fd, &stat_buf); printf("file size = %d\n", stat_buf.st_size); /* 4. Directory operation */ dir = opendir("/home"); entry = readdir(dir); printf("dir = %s\n", entry->d_name); return 0; } 6 Why do we care EXT4 file system? • Most widely-deployed file system • Default file system of major Linux distributions • File system used in Google data center • Default file system of Android kernel • Follows the traditional file system design 7 History of file system design 8 UFS (Unix File System) • The original UNIX file system • Design by Dennis Ritche and Ken Thompson (1974) • The first Linux file system (ext) and Minix FS has a similar layout 9 UFS (Unix File System) • Performance problem of UFS (and the first Linux file system) • Especially, long seek time between an inode and data block 10 FFS (Fast File System) • The file system of BSD UNIX • Designed by Marshall Kirk McKusick, et al. -
Introduzione Al Mondo Freebsd
Introduzione al mondo FreeBSD Corso avanzato Netstudent Netstudent http://netstudent.polito.it E.Richiardone [email protected] maggio 2009 CC-by http://creativecommons.org/licenses/by/2.5/it/ The FreeBSD project - 1 ·EÁ un progetto software open in parte finanziato ·Lo scopo eÁ mantenere e sviluppare il sistema operativo FreeBSD ·Nasce su CDROM come FreeBSD 1.0 nel 1993 ·Deriva da un patchkit per 386BSD, eredita codice da UNIX versione Berkeley 1977 ·Per problemi legali subisce un rallentamento, release 2.0 nel 1995 con codice royalty-free ·Dalla release 5.0 (2003) assume la struttura che ha oggi ·Disponibile per x86 32 e 64bit, ia64, MIPS, ppc, sparc... ·La mascotte (Beastie) nasce nel 1984 The FreeBSD project - 2 ·Erede di 4.4BSD (eÁ la stessa gente...) ·Sistema stabile; sviluppo uniforme; codice molto chiaro, ordinato e ben commentato ·Documentazione ufficiale ben curata ·Licenza molto permissiva, spesso attrae aziende per progetti commerciali: ·saltuariamente esterni collaborano con implementazioni ex-novo (i.e. Intel, GEOM, atheros, NDISwrapper, ZFS) ·a volte no (i.e. Windows NT) ·Semplificazione di molte caratteristiche tradizionali UNIX Di cosa si tratta Il progetto FreeBSD include: ·Un sistema base ·Bootloader, kernel, moduli, librerie di base, comandi e utility di base, servizi tradizionali ·Sorgenti completi in /usr/src (~500MB) ·EÁ giaÁ abbastanza completo (i.e. ipfw, ppp, bind, ...) ·Un sistema di gestione per software aggiuntivo ·Ports e packages ·Documentazione, canali di assistenza, strumenti di sviluppo ·i.e. Handbook, -
File Handling in Python
hapter C File Handling in 2 Python There are many ways of trying to understand programs. People often rely too much on one way, which is called "debugging" and consists of running a partly- understood program to see if it does what you expected. Another way, which ML advocates, is to install some means of understanding in the very programs themselves. — Robin Milner In this Chapter » Introduction to Files » Types of Files » Opening and Closing a 2.1 INTRODUCTION TO FILES Text File We have so far created programs in Python that » Writing to a Text File accept the input, manipulate it and display the » Reading from a Text File output. But that output is available only during » Setting Offsets in a File execution of the program and input is to be entered through the keyboard. This is because the » Creating and Traversing a variables used in a program have a lifetime that Text File lasts till the time the program is under execution. » The Pickle Module What if we want to store the data that were input as well as the generated output permanently so that we can reuse it later? Usually, organisations would want to permanently store information about employees, inventory, sales, etc. to avoid repetitive tasks of entering the same data. Hence, data are stored permanently on secondary storage devices for reusability. We store Python programs written in script mode with a .py extension. Each program is stored on the secondary device as a file. Likewise, the data entered, and the output can be stored permanently into a file. -
System Calls and Standard I/O
System Calls and Standard I/O Professor Jennifer Rexford http://www.cs.princeton.edu/~jrex 1 Goals of Today’s Class • System calls o How a user process contacts the Operating System o For advanced services that may require special privilege • Standard I/O library o Generic I/O support for C programs o A smart wrapper around I/O-related system calls o Stream concept, line-by-line input, formatted output, ... 2 1 System Calls 3 Communicating With the OS User Process signals systems calls Operating System • System call o Request to the operating system to perform a task o … that the process does not have permission to perform • Signal o Asynchronous notification sent to a process … to notify the process of an event that has occurred o 4 2 Processor Modes • The OS must restrict what a user process can do o What instructions can execute o What portions of the address space are accessible • Supervisor mode (or kernel mode) o Can execute any instructions in the instruction set – Including halting the processor, changing mode bit, initiating I/O o Can access any memory location in the system – Including code and data in the OS address space • User mode o Restricted capabilities – Cannot execute privileged instructions – Cannot directly reference code or data in OS address space o Any such attempt results in a fatal “protection fault” – Instead, access OS code and data indirectly via system calls 5 Main Categories of System Calls • File system o Low-level file I/O o E.g., creat, open, read, write, lseek, close • Multi-tasking mechanisms o Process -
[13주차] Sysfs and Procfs
1 7 Computer Core Practice1: Operating System Week13. sysfs and procfs Jhuyeong Jhin and Injung Hwang Embedded Software Lab. Embedded Software Lab. 2 sysfs 7 • A pseudo file system provided by the Linux kernel. • sysfs exports information about various kernel subsystems, HW devices, and associated device drivers to user space through virtual files. • The mount point of sysfs is usually /sys. • sysfs abstrains devices or kernel subsystems as a kobject. Embedded Software Lab. 3 How to create a file in /sys 7 1. Create and add kobject to the sysfs 2. Declare a variable and struct kobj_attribute – When you declare the kobj_attribute, you should implement the functions “show” and “store” for reading and writing from/to the variable. – One variable is one attribute 3. Create a directory in the sysfs – The directory have attributes as files • When the creation of the directory is completed, the directory and files(attributes) appear in /sys. • Reference: ${KERNEL_SRC_DIR}/include/linux/sysfs.h ${KERNEL_SRC_DIR}/fs/sysfs/* • Example : ${KERNEL_SRC_DIR}/kernel/ksysfs.c Embedded Software Lab. 4 procfs 7 • A special filesystem in Unix-like operating systems. • procfs presents information about processes and other system information in a hierarchical file-like structure. • Typically, it is mapped to a mount point named /proc at boot time. • procfs acts as an interface to internal data structures in the kernel. The process IDs of all processes in the system • Kernel provides a set of functions which are designed to make the operations for the file in /proc : “seq_file interface”. – We will create a file in procfs and print some data from data structure by using this interface. -
BSD UNIX Toolbox 1000+ Commands for Freebsd, Openbsd
76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page iii BSD UNIX® TOOLBOX 1000+ Commands for FreeBSD®, OpenBSD, and NetBSD®Power Users Christopher Negus François Caen 76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page ii 76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page i BSD UNIX® TOOLBOX 76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page ii 76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page iii BSD UNIX® TOOLBOX 1000+ Commands for FreeBSD®, OpenBSD, and NetBSD®Power Users Christopher Negus François Caen 76034ffirs.qxd:Toolbox 4/2/08 12:50 PM Page iv BSD UNIX® Toolbox: 1000+ Commands for FreeBSD®, OpenBSD, and NetBSD® Power Users Published by Wiley Publishing, Inc. 10475 Crosspoint Boulevard Indianapolis, IN 46256 www.wiley.com Copyright © 2008 by Wiley Publishing, Inc., Indianapolis, Indiana Published simultaneously in Canada ISBN: 978-0-470-37603-4 Manufactured in the United States of America 10 9 8 7 6 5 4 3 2 1 Library of Congress Cataloging-in-Publication Data is available from the publisher. No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning or otherwise, except as permitted under Sections 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, 222 Rosewood Drive, Danvers, MA 01923, (978) 750-8400, fax (978) 646-8600. Requests to the Publisher for permis- sion should be addressed to the Legal Department, Wiley Publishing, Inc., 10475 Crosspoint Blvd., Indianapolis, IN 46256, (317) 572-3447, fax (317) 572-4355, or online at http://www.wiley.com/go/permissions. -
Hardware-Driven Evolution in Storage Software by Zev Weiss A
Hardware-Driven Evolution in Storage Software by Zev Weiss A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Computer Sciences) at the UNIVERSITY OF WISCONSIN–MADISON 2018 Date of final oral examination: June 8, 2018 ii The dissertation is approved by the following members of the Final Oral Committee: Andrea C. Arpaci-Dusseau, Professor, Computer Sciences Remzi H. Arpaci-Dusseau, Professor, Computer Sciences Michael M. Swift, Professor, Computer Sciences Karthikeyan Sankaralingam, Professor, Computer Sciences Johannes Wallmann, Associate Professor, Mead Witter School of Music i © Copyright by Zev Weiss 2018 All Rights Reserved ii To my parents, for their endless support, and my cousin Charlie, one of the kindest people I’ve ever known. iii Acknowledgments I have taken what might be politely called a “scenic route” of sorts through grad school. While Ph.D. students more focused on a rapid graduation turnaround time might find this regrettable, I am glad to have done so, in part because it has afforded me the opportunities to meet and work with so many excellent people along the way. I owe debts of gratitude to a large cast of characters: To my advisors, Andrea and Remzi Arpaci-Dusseau. It is one of the most common pieces of wisdom imparted on incoming grad students that one’s relationship with one’s advisor (or advisors) is perhaps the single most important factor in whether these years of your life will be pleasant or unpleasant, and I feel exceptionally fortunate to have ended up iv with the advisors that I’ve had.