(Holothuria Scabra) at Unguja Ukuu, Zanzibar Claire Hacker SIT Study Abroad
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Parameterisation and Application of Dynamic Energy Budget Model to Sea Cucumber Apostichopus Japonicus
Vol. 9: 1–8, 2017 AQUACULTURE ENVIRONMENT INTERACTIONS Published January 10 doi: 10.3354/aei00210 Aquacult Environ Interact OPENPEN ACCESSCCESS Parameterisation and application of dynamic energy budget model to sea cucumber Apostichopus japonicus Jeffrey S. Ren1, Jeanie Stenton-Dozey1, Jihong Zhang2,3,* 1National Institute of Water and Atmospheric Research, 10 Kyle Street, PO Box 8602, Christchurch 8440, New Zealand 2Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, PR China 3Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Aoshanwei, Jimo, Qingdao 266200, PR China ABSTRACT: The sea cucumber Apostichopus japonicus is an important aquaculture species in China. As global interest in sustainable aquaculture grows, the species has increasingly been used for co-culture in integrated multitrophic aquaculture (IMTA). To provide a basis for opti - mising stocking density in IMTA systems, we parameterised and validated a standard dynamic energy budget (DEB) model for the sea cucumber. The covariation method was used to estimate parameters of the model with the DEBtool package. The method is based on minimisation of the weighted sum of squared deviation for datasets and model predictions in one single-step pro- cedure. Implementation of the package requires meaningful initial values of parameters, which were estimated using non-linear regression. Parameterisation of the model suggested that the accuracy of the lower (TL) and upper (TH) boundaries of tolerance temperatures are particularly important, as these would trigger the unique behaviour of the sea cucumber for hibernation and aestivation. After parameterisation, the model was validated with datasets from a shellfish aqua- culture environment in which sea cucumbers were co-cultured with the scallop Chlamys farreri and Pacific oyster Crassostrea gigas at various combinations of density. -
Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
Approaches in Rebuilding Sea Urchin and Sea Cucumber Populations in the Philippines Marie Antonette J
Approaches in Rebuilding Sea Urchin and Sea Cucumber Populations in the Philippines Marie Antonette J. Meñez Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines email: [email protected] Abstract Sea urchins and sea cucumbers are among the most valuable and overexploited fishery resources. Culture and release of juvenile Tripneustes gratilla and Holothuria scabra have been undertaken to rebuild depleted populations and provide a supplemental source of income for fishers. In both cases an integrated socio- ecological approach was used. Studies on factors affecting growth and survival of released juveniles were conducted alongside active participation of local partners in site management and regular monitoring. For T. gratilla, community-based grow-out in sea cages complemented with restocking of protected areas helped in the recovery of a collapsed fishery. Gonad biomass and quality of sea urchins fed with Sargassum were high. These increased the value of the gonads and reproductive output of cultured sea urchins. In the case of H. scabra, release of juveniles in a communal sea ranch resulted in the build-up in density and biomass. Observations of regular mass spawning in the sea ranch established that a viable spawning population was maintained through selective harvesting. Both the sea urchin cage grow-out culture and sea cucumber sea ranch function as reproductive reserves and source of larval supply to adjacent suitable habitats. In addition, wild recruits in the sea ranch and in the vicinity of the sea urchin sea cages indicate that natural recruitment may be enhanced by the high density of conspecific adults. These models have demonstrated that both ecological and economic benefits can be realized through of responsible culture-based management interventions. -
Apostichopus Japonicus
Acta Oceanol. Sin., 2018, Vol. 37, No. 5, P. 54–66 DOI: 10.1007/s13131-017-1101-4 http://www.hyxb.org.cn E-mail: [email protected] Differential gene expression in the body wall of the sea cucumber (Apostichopus japonicus) under strong lighting and dark conditions ZHANG Libin1, 2, FENG Qiming1, 3, SUN Lina1, 2, FANG Yan4, XU Dongxue5, ZHANG Tao1, 2, YANG Hongsheng1, 2* 1 CAS Key laboratory of Marine Ecology and Environmental Sciences, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China 2 Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266071, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 School of Agriculture, Ludong University, Yantai 264025, China 5 College of Marine Science and Engineering, Qingdao Agricultural University, Qingdao 266109, China Received 25 January 2017; accepted 9 March 2017 © Chinese Society for Oceanography and Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Sea cucumber, Apostichopus japonicus is very sensitive to light changes. It is important to study the influence of light on the molecular response of A. japonicus. In this study, RNA-seq provided a general overview of the gene expression profiles of the body walls of A. japonicus exposed to strong light (“light”), normal light (“control”) and fully dark (“dark”) environment. In the comparisons of “control” vs. “dark”, ”control” vs. “light” and “dark” vs. “light”, 1 161, 113 and 1 705 differentially expressed genes (DEGs) were identified following the criteria of |log2ratio|≥1 and FDR≤0.001, respectively. Gene ontology analysis showed that “cellular process” and “binding” enriched the most DEGs in the category of “biological process” and “molecular function”, while “cell” and “cell part” enriched the most DEGs in the category of “cellular component”. -
Taxonomy of the Heavily Exploited Indo-Pacific Sandfish
Zoological Journal of the Linnean Society, 2009, 155, 40–59. With 10 figures Taxonomy of the heavily exploited Indo-Pacific sandfish complex (Echinodermata: Holothuriidae) CLAUDE MASSIN1*, SVEN UTHICKE2, STEVEN W. PURCELL3, FRANK W. E. ROWE, FLS4† and YVES SAMYN5 1Department of Invertebrates, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium 2Australian Institute of Marine Science, PMB No 3, Townsville, Qld 4810, Australia 3The WorldFish Center, c/o SPC – Secretariat of the Pacific Community, B.P. D5, 98848 Noumea Cedex, New Caledonia 4Research Associate, Australian Museum, Sydney, NSW, 2000, Australia 5Global Taxonomy Initiative, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium Received 5 September 2007; accepted for publication 18 October 2007 Two commercially valuable holothurians, the sandfish and golden sandfish, vary in colour and have a confused taxonomy, lending uncertainty to species identifications. A recent molecular study showed that the putative variety Holothuria (Metriatyla) scabra var. versicolor Conand, 1986 (‘golden sandfish’) is a distinct species from, but could hybridize with, H. (Metriatyla) scabra Jaeger, 1833 (’sandfish’). Examination of the skeletal elements and external morphology of these species corroborates these findings. The identity of H. (M.) scabra is unambiguously defined through the erection and description of a neotype, and several synonyms have been critically re-examined. The nomenclaturally rejected taxon H. (Metriatyla) timama Lesson, 1830 and H. (M.) scabra var. versicolor (a nomen nudum) are herein recognized as conspecific and are allocated to a new species, Holothuria lessoni sp. nov., for which type specimens are described. The holotype and only known specimen of H. aculeata Semper, 1867, has been found and is redescribed. -
A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China
Reviews in Fisheries Science & Aquaculture ISSN: 2330-8249 (Print) 2330-8257 (Online) Journal homepage: http://www.tandfonline.com/loi/brfs21 A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China Qingxi Han, John K. Keesing & Dongyan Liu To cite this article: Qingxi Han, John K. Keesing & Dongyan Liu (2016) A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China, Reviews in Fisheries Science & Aquaculture, 24:4, 326-341, DOI: 10.1080/23308249.2016.1193472 To link to this article: http://dx.doi.org/10.1080/23308249.2016.1193472 Published online: 21 Jun 2016. Submit your article to this journal Article views: 115 View related articles View Crossmark data Citing articles: 2 View citing articles Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=brfs21 Download by: [National Science Library] Date: 19 December 2016, At: 03:07 REVIEWS IN FISHERIES SCIENCE & AQUACULTURE 2016, VOL. 24, NO. 4, 326–341 http://dx.doi.org/10.1080/23308249.2016.1193472 A Review of Sea Cucumber Aquaculture, Ranching, and Stock Enhancement in China Qingxi Hana,b, John K. Keesingc, and Dongyan Liub aSchool of Marine Sciences, Ningbo University, Ningbo, Zhejiang Province, P. R. China; bYantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, Shandong, P. R. China; cCSIRO Oceans and Atmosphere Research, Wembley, Australia ABSTRACT KEYWORDS Sea cucumber aquaculture has flourished as a result of increasing demand coupled with declining Sea cucumber; Apostichopus wild fisheries and has been facilitated by technical progress in the production and grow-out phase japonicas; stock of larvae and small juvenile sea cucumbers. -
Identifying Sea Cucumbers
Identifying Sea Cucumbers: Implementing and enforcing an Appendix II listing of teatfish INTRODUCTION Sea cucumbers, or bêche-de-mer (the dried product), are a luxury good classified as one of the eight culinary treasures of the sea. On the international market, sea cucumbers can be sold at prices ranging from USD $145-389 per kg, an increase of 16.6% from 2011–2016. While demand for sea cucumbers remains high, stocks of some wild populations have dropped significantly. Parties to the Convention on International Trade in Endangered Species of Wild Flora and Fau- na (CITES) have proposed the white teatfish Holothuria( fuscogilva), and the two black teatfishes (Holothuria nobilis and Holothuria whitmaei) for listing in Appendix II at the 18th CITES Conference of Parties (CoP18). With population declines from 50-90%, not only are these species in need of international trade management to ensure continued trade is sustainably sourced, but they are also easily identifiable from other sea cucumber species - meaning CITES Parties can easily and effectively implement this potential listing. Sea cucumbers are bottom dwelling species, residing along coral reefs and in association with seagrasses almost globally. Moving slowly across the ocean floor, sea cucumbers consume, among other things, fine organic matter and sand. Doing so ensures that nutrients are cycled back into the ecosystem, as well as the mixing of oxygen into the substrate - essential functions that pro- vide the backbone of healthy marine ecosystems. Out of 1,200 known sea cucumber species, only approximately 70 species are found in the international trade. Of those found in trade, H. -
Electron Microscopy Reveals the Ultrastructure and the Chromatin Organization of Holothuria Scabra Male Germ Cells
Songklanakarin J. Sci. Technol. 40(2), 321-328, Mar. - Apr. 2018 Original Article Electron microscopy reveals the ultrastructure and the chromatin organization of Holothuria scabra male germ cells Worawit Suphamungmee1, Nittiya Nontunha1, Supakant Chaichotranunt2, Yotsawan Tinikul3, Tanate Poomtong2, and Prasert Sobhon1, 4* 1 Department of Anatomy, Faculty of Science, Mahidol University, Ratchathewee, Bangkok, 10400 Thailand 2The Coastal Fisheries Research and Development Center, Mueang, Prachuap Khiri Khan, 77000 Thailand 3Mahidol University, Nakhonsawan Campus, Mueang, Nakhon Sawan, 60130 Thailand 4Faculty of Allied Health Sciences, Burapha University, Mueang, Chon Buri, 20131 Thailand Received: 5 December 2016; Revised: 15 December 2016; Accepted: 21 December 2016 Abstract Holothuria scabra release their gametes into seawater where external fertilization rapidly takes place. H. scabra sperm are generated through the steps of germ cell proliferation and differentiation within the wall of the testicular tubule. The outer most layer of the tubular wall supports the developing germ cells. All germ cells are classified according to the hetero- chromatization pattern of the cell nuclei. Based on the degrees of chromatin condensation, the two spermatid stages are classified as St1 and St2. The St1 exhibits a small, round nucleus with heterochromatin clumping around the nuclear envelope which, in turn, is surrounded by the mitochondrial aggregation. In the St2, thick chromatin fibers appear. Large mitochondria fuse and the tail rudiment also starts to form at the posterior, whereas acrosome and subacrosomal structures are fully formed at the anterior region. It is speculated that a coiling of nucleosomes organized by the sperm-specific histones causes the chromatin condensation in spermatids and sperm nuclei of H. -
High-Value Components and Bioactives from Sea Cucumbers for Functional Foods—A Review
Mar. Drugs 2011, 9, 1761-1805; doi:10.3390/md9101761 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Review High-Value Components and Bioactives from Sea Cucumbers for Functional Foods—A Review Sara Bordbar 1, Farooq Anwar 1,2 and Nazamid Saari 1,* 1 Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia; E-Mails: [email protected] (S.B.); [email protected] (F.A.) 2 Department of Chemistry and Biochemistry, University of Agriculture, Faisalabad 38040, Pakistan * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +60-389-468-385; Fax: +60-389-423-552. Received: 3 August 2011; in revised form: 30 August 2011 / Accepted: 8 September 2011 / Published: 10 October 2011 Abstract: Sea cucumbers, belonging to the class Holothuroidea, are marine invertebrates, habitually found in the benthic areas and deep seas across the world. They have high commercial value coupled with increasing global production and trade. Sea cucumbers, informally named as bêche-de-mer, or gamat, have long been used for food and folk medicine in the communities of Asia and Middle East. Nutritionally, sea cucumbers have an impressive profile of valuable nutrients such as Vitamin A, Vitamin B1 (thiamine), Vitamin B2 (riboflavin), Vitamin B3 (niacin), and minerals, especially calcium, magnesium, iron and zinc. A number of unique biological and pharmacological activities including anti-angiogenic, anticancer, anticoagulant, anti-hypertension, anti-inflammatory, antimicrobial, antioxidant, antithrombotic, antitumor and wound healing have been ascribed to various species of sea cucumbers. Therapeutic properties and medicinal benefits of sea cucumbers can be linked to the presence of a wide array of bioactives especially triterpene glycosides (saponins), chondroitin sulfates, glycosaminoglycan (GAGs), sulfated polysaccharides, sterols (glycosides and sulfates), phenolics, cerberosides, lectins, peptides, glycoprotein, glycosphingolipids and essential fatty acids. -
Feeding Sea Cucumbers in Integrated Multitrophic Aquaculture
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Electronic Publication Information Center Reviews in Aquaculture (2016) 0, 1–18 doi: 10.1111/raq.12147 Role of deposit-feeding sea cucumbers in integrated multitrophic aquaculture: progress, problems, potential and future challenges Leonardo Nicolas Zamora1, Xiutang Yuan2, Alexander Guy Carton3 and Matthew James Slater4 1 Leigh Marine Laboratory, Institute of Marine Science, University of Auckland, Warkworth, New Zealand 2 State Oceanic Administration, National Marine Environmental Monitoring Center, Dalian, China 3 Division of Tropical Environments and Societies, College of Marine and Environmental Sciences, Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, Australia 4 Alfred-Wegener-Institute, Helmholtz Center for Polar and Marine Research, Bremerhaven, Germany Correspondence Abstract Leonardo Nicolas Zamora, Leigh Marine Laboratory, Institute of Marine Science, There is significant commercial and research interest in the application of sea University of Auckland, PO Box 349, cucumbers as nutrient recyclers and processors of particulate waste in polyculture Warkworth, New Zealand. E-mail: or integrated multitrophic aquaculture (IMTA) systems. The following article [email protected] reviews examples of existing IMTA systems operating with sea cucumbers, and details the role and effect of several sea cucumber species in experimental and Received 12 August 2015; accepted 1 February pilot IMTA systems worldwide. Historical observations and quantification of 2016. impacts of sea cucumber deposit-feeding and locomotion are examined, as is the development and testing of concepts for the application of sea cucumbers in sedi- ment remediation and site recovery. The extension of applied IMTA systems is reported, from basic piloting through to economically viable farming systems operating at commercial scales. -
Growth and Survival Rate of Holothuria
Growth and survival rate of Holothuria (Metriatyla) scabra with feed from chicken waste in Menia Waters, Sabu Raijua District, East Nusa Tenggara, Indonesia 1Marcelien D. R. Oedjoe, 2Suseno, 3Yulianus Linggi, 4Franchy C. Liufeto 1,3,4 Faculty of Marine and Fisheries, Nusa Cendana University, Kupang NTT, Indonesia; 2 Marine and Fisheries Polytechnic of Kupang, Indonesia. Corresponding author: M. D. R. Oedjoe, [email protected] Abstract. Fisheries resources are common property rights, so their management has open access, which means anyone can get involved. The fishery products obtained become uncertain and overfished, therefore to overcome the problem of overfishing the Holothuria scabra (sea cucumber) resources, this study experiments on pen culture techniques development. Cultivation of H. scabra in confined imprisonment, in addition to maintaining the sustainability of its resources, is also a new employment field for coastal communities that can provide added value in improving welfare. The objectives of the study were to determine: (a) the growth, (b) the survival rate, (c) the pattern of length versus weight increase, for the H. scabra found in the Menia waters. The method used is an experimental method of cultivation (pen culture). The results obtained from this study are: increase in the length with 1.5-6.35 cm and in the weight with 4-10.07 g weekly, for 60 days (8 weeks). The growth rate of H. scabra day-1 for 30 days was between 0.15-0.93% and the average daily growth rate was 0.66±0.68%. Length relationship to weight (growth pattern) had an allometric coefficient b>3.