'Atypical' Bacteria Are a Common Cause of Community-Acquired

Total Page:16

File Type:pdf, Size:1020Kb

'Atypical' Bacteria Are a Common Cause of Community-Acquired rates over many years need to be utilised to determine baseline as well as excess mortality levels. In our study 'Atypical' bacteria are a mortality figures on their own over the past few years contributed little to our knowledge of the extent of influenza. common cause of An epidemic of influenza is diagnosed on both virological criteria (the proof of the presence of influenza virus) together community-acquired with epidemiological criteria (based on the presence of these nonspecific indicators). A number of definitions of an pneumonia in hospitalised epidemic or an epidemic threshold have been devised. For example, the rise of the monthly incidence of influenza-like adults illness beyond 400 per 100 000 inhabitants'6 or the isolation G. Maartens, S. J. Lewis, C. de Goveia, C. Bartie, • of influenza from at least 10% of submitted samples,7 or an excess of cases of influenza-like illness and nonspecific D. Roditi, K. P. Klugman acute respiratory illness for 2 consecutive weeks above the epidemic threshold" Objectives. To assess the proportion of cases of community· The success of the influenza surveillance programme acquired pneumonia caused by 'atypical' bacteria, inclUding depends directly on the interest and enthusiasm of the the recently discovered Chlamydia pneumoniae, and to sentinel doctors and the programme is an example par compare the clinical, radiographic and laboratory features of excellence of how primary care physicians and biomedical patients with and without 'atypical' bacteria. laboratories can co-operate and collaborate in a particularly Methods. A prospective serological study was carried out important preventive medical venture. on consecutive adult pneumonia patients from July 1987 to July 1988. Acute and convalescent sera were tested in Our sincere thanks to all the sentinel doctors who assisted batches for antibodies against Legionella pneumophila so enthusiastically with the Witwatersrand Viral Watch serogroup 1, C. pneumoniae, Chlamydia psittaci, Coxiella Surveillance Programme, as well as the principals and burnetii (phase-2 antigen) and Mycoplasma pneumoniae secretaries of all the schools included in the absenteeism (lgG and IgM). Records and chest radiographs were surveillance programme. We would also like to thank Ms examined retrospectively. Magda de Beer of the Department of Health, Housing and Results. Acute and convalescent sera were available from Urbanisation of the City of Johannesburg, and Or J. Lundie 113 patients. The records of 4 patients could not be traced and Sr E. Joss for providing mortality data for the two and 17 patients did not fulfil the inclusion criteria. Thirty-two homes for the aged studied. of these 92 patients (35,9%) were found to be infected with REFERENCES 'atypical' bacteria. The two most common organisms were 1. Hayle F. \'Yickramasinghe C. The case for life as a cosmic phenomenon. Nature C. pneumoniae (20,7%) and L. pneumophila (8,7%). There. 1986; 322; 509-511. were no differences in the clinical and radiographic features 2. Douglas R. Prevention, management and control of Influenza: a mandate for the 1980s. Am J Med 1987; 82: 1-3. of patients with and without 'atypical' bacteria. Clinicians 3. Ghendon Y. Influenza surveillance. Bull World j-Iealth Organ 1991; 69: 509-515. prescribed erythromycin or tetracyclines with equal 4. Schoub BD, Johnson S, McAnerney JM, Martin E, Dos Santos IL. Laboratory studies of the 1984 influenza epidemic on the Witwatersrand. S Atr Med J 1986; frequency in the two groups. 70: 815-818. Conclusions. 'Atypical' bacteria, especially C. 5. Assaad F, Cockburn WC, Sundaresan TK. Use of excess mortality from respiratory diseases in the study of influenza. Bull World Health Organ 1973; 49: 219-233. pneumoniae, are a common cause of community-acquired 6. Paul Glezen W, Decker M, Joseph SW, Mercready RG jun. Acute respiratory disease associated with influenza epidemics in Houston, 1981-1983. J Infect Dis pneumonia in adults in South Africa. This is the first 1987; 155: 1119-1126. demonstration of an aetiological role of C. pneumon.iae in 7. Hannoun C, Dab W, Cohen JM. A new influenza surveillance system in France: the lIe-de-France 'GAOG'. 1. Principles and methodology. Eur J Epidemio/1989; 5: this country. We confirmed the finding of other studies that 285-293. there are no clinical, radiographic or laboratory features 8. Public Health Laboratory Service Standing Advisory Committee on Influenza. Influenza surveillance. 1972-1975. J Hyg 1977; 78: 223-233. characteristic of 'atypical' bacterial infection in hospitalised 9. Snacken A, lion J. Van Casteren V, et al. Five years of sentinel surveillance of patients. This has major implications for therapy, as these acute respiratory infections (1985-1990). The benefits of an influenza eany warning system. Eur J Epidemiol 1992; 8: 485-490. organisms respond to erythromycin and tetracyclines, but· 10. Wand Health Organisation. Report of WHO/GEIG informal consultation on the ~-Iactam standardisation and improvement of Influenza surveillance, Monaco, 25 September not to antibiotics. 1991 (WHO/GEIG.RPT/ke/5). Geneva: WHO. 1991; 1-5. S Afr Med J 1994; 84: 678-682. 11. Mancini GM, Arangio-Ruiz G. Campitelli L. et al. Surveillance of influenza A and 8 viruses in Italy between 1984 and 1987. Eur J Epidemiol 1988; 4: 445-450. 12. World Health Organisation. Aecommended composition of Influenza virus vaccines for use in the 1990-1991 season. WkJy Epidemiol Aec 1990; 65: 53-60. 13. Wand Health Organisation. Recommended composition of Influenza virus vaccines for use in the 1991-1992 season. WkJy Epidemiol Rec 1991; 66: 57-64. Departments of Medicine and Medical Microbiology, Groote Schuur 14. World Health Organisation. Recommended composition of Influenza virus vaccines Hospital and University of Cape Town for use in the 1992-1993 season. WkJy Epidemiol Rec 1992; 67: 57-64. 15. Udwell OM. Sommerville T. Observations on the incidence and distribution of the G. Maartens. EC.P. (SA) common cold in a rural community during 1948 and 1949. J Hyg 1951; 49: 365­ 381. S. J. Lewis. M.RC.? (UX) 16. Fleming DM, Ayres JG. Diagnosis and patterns of Incidence of influenza-like illness C. de Goveia. M.MED. (MICROBIOL) and the common cold in general practice. J R CoJJ Gen Pract 1988; 38: 159-162. D. Roditi. M.MED. (MICROBIOL) Accepted 4 July 1994. Department of Microbiology, South African Institute for Medical Research and University of the Witwatersrand, Johannesburg C. Bartie. 8.SC. HONS K. P. KJugman. PH.D.• EE PATH. (SA) Volume 84 No. 10 October 1994 SAMJ SAMJ ARTICLES Atypical pneumonia is a clinical syndrome first described by All of the studies quoted so far were performed in Reimann in 1938.' There is no precise definition of this developed countries. A previous study from this institution22 syndrome! but the illness has a subacute onset with showed that 10% of cases were due to M. pneumoniae. constitutional symptoms and a dry cough. Radiographic Other 'atypical' bacteria were not tested for in that study. shadowing is characteristically non-segmental and more The aim of the current study was to assess the proportion of extensive than the physical examination would suggest. cases of community-acquired pneumonia due to M. Leukocytosis is absent or moderate. The course is generally pneumoniae, Legionella pneumophila, C. psittaci, C. benign. Mycoplasma pneumoniae is the most common pneumoniae and C. burnetii in a developing country. A aetiological agent of atypical pneumonia. Other bacteria that secondary objective was to compare the clinical, cause atypical pneumonia are Chlamydia psittaci, Legionella radiographic and laboratory features of patients with and spp. and Coxiella burnetii (the agent that causes Q fever)! without 'atypical' bacteria. These organisms share three characteristics: they are not visible on Gram stain, they do not grow on conventional culture media and they do not respond to penicillins or cephalosporins. Patients and methods There is a widespread belief that pneumonia caused by We evaluated consecutive adults with an admission these organisms can readily be differentiated from diagnosis of pneumonia from July 1987 to July 1988 at pneumonia due to conventional bacteria. However, the most Groote Schuur Hospital, a large community-based university common radiographic finding in pneumonia due to these hospital. Pneumonia was defined as an acute respiratory four 'atypical' bacteria is unilateral consolidation, often lobar illness with compatible shadowing on chest radiograph or segmental,3-8 and the clinical features are generally (performed on admission or within 48 hours). Patients with indistinguishable from those found in pneumonia caused by pulmonary tuberculosis or severe immunosuppression (e.g. conventional bacteria. 2.7,'0 in cases of AIDS) were excluded. Folders were Table I summarises four recent studies which show that retrospectively reviewed for demographic data, underlying 'atypical' bacteria cause a significant proportion of cases of illnesses, symptom duration, blood pressure values, community-acquired pneumonia in adults. The major respiratory rate, presence of confusion, laboratory features differences in these studies are the incidence of (P02, urea values, white cell count) and whether the chest mycoplasma pneumonia, which occurs in cyclical epidemics radiograph showed a segmental or non-segmental pattern every few years," and legionella pneumonia which varies of pulmonary shadowing. geographically and temporally." A fifth 'atypical' bacterium that causes pneumonia has Microbiological
Recommended publications
  • Comparison of the Effectiveness of Penicillin and Broad-Spectrum Β-Lactam Antibiotics in the Treatment of Community-Acquired Pneumonia in Children
    Clinical research Comparison of the effectiveness of penicillin and broad-spectrum β-lactam antibiotics in the treatment of community-acquired pneumonia in children Vojko Berce1, Maja Tomazin1, Erika Jerele2, Maša Cugmas2, Maša Berce3, Mario Gorenjak2 1Department of Pediatrics, University Medical Centre, Maribor, Slovenia Corresponding author: 2Department of Pediatrics, Faculty of Medicine, University of Maribor, Maribor, Slovenia Assist. Prof. Vojko Berce MD, 3 Section of Dental Medicine, Faculty of Medicine, University of Ljubljana, Ljubljana, PhD Slovenia Department of Pediatrics University Medical Centre Submitted: 5 April 2020 Maribor, Slovenia Accepted: 16 July 2020 Phone: +38 631870834 E-mail: vojko.berce@guest. Arch Med Sci arnes.si DOI: https://doi.org/10.5114/aoms.2020.98198 Copyright © 2020 Termedia & Banach Abstract Introduction: Bacterial community-acquired pneumonia (CAP) in children is caused mostly by Streptococcus pneumoniae. The resistance of pneumococci to penicillin is increasing. However, most guidelines still prefer treatment with narrow-spectrum antibiotics. Therefore, we compared the effect of in- travenous treatment with penicillin and broad-spectrum β-lactam antibiot- ics in children with CAP. The objective of our study was to assess the eligi- bility of treatment of bacterial CAP with intravenous penicillin. Material and methods: We performed a prospective study and included 136 children hospitalised because of bacterial CAP. Patients were treated in- travenously with either penicillin G or broad-spectrum β-lactam antibiotic monotherapy. Lung ultrasound and blood tests were performed at admis- sion and after 2 days of treatment. The time interval from the application of antibiotics to permanent defervescence was recorded. Results: Eighty-seven (64.0%) patients were treated with penicillin G, and 49 (36.0%) were treated with broad-spectrum β-lactam antibiotics.
    [Show full text]
  • Pneumonia Panel
    Guidance on Use of the Pneumonia Panel for Respiratory Infections Although the number of pathogens that cause pneumonia is lengthy, establishing the microbiologic etiology of pneumonia is inherently difficult. A recent large multi-center study of community-acquired pneumonia (CAP) found that only 38% of 2259 CAP cases had a microbiologic diagnosis with 23% having viruses detected, 11% bacterial, and 3% had both viruses and bacteria detected.1 Current tools to assist in pneumonia diagnosis include respiratory tract cultures (sputum, BAL, tracheal aspirate, mini-BAL), urine antigens (pneumococcal, Legionella), serology, and PCR for viral and certain bacterial pathogens. While these tools are useful, the study noted above used all these tools and was unable to document an etiology causing pneumonia in 62% of patients. Thus, more sensitive tools for detection of respiratory pathogens are still needed. Nebraska Medicine has recently introduced a new FDA-approved multiplex PCR panel to assist in determination of the etiology of pneumonia, termed the Pneumonia Panel (PP). This test uses a nested multiplex PCR- approach to amplify nucleic acid targets directly from sputum or bronchoalveolar lavage (BAL) in patients with suspected pneumonia. The list of pathogens and resistance genes included in the panel is found in Table 1. Note that the bacterial targets are detected semi-quantitatively whereas the atypical pathogens and the viral targets are detected qualitatively. Table 1: Pneumonia Panel Pathogen Targets and Associated Resistance Genes Semi-quantitative Detection: Gram Positive Organisms: Resistance Genes (Staph aureus only): Staphylococcus aureus mecA/C and MREJ Streptococcus pneumoniae Streptococcus agalactiae Streptococcus pyogenes Gram Negative Organisms: Resistance Genes (All Gram Negatives): Acinetobacter calcoaceticus-baumannii complex CTX-M Enterobacter cloacae complex IMP E.
    [Show full text]
  • Approach to Identifying Causative Pathogens of Community-Acquired Pneumonia in Children Using Culture, Molecular, and Serology Tests
    PERSPECTIVE published: 28 May 2021 doi: 10.3389/fped.2021.629318 Approach to Identifying Causative Pathogens of Community-Acquired Pneumonia in Children Using Culture, Molecular, and Serology Tests Yan Mardian 1, Adhella Menur Naysilla 1, Dewi Lokida 2, Helmia Farida 3, Abu Tholib Aman 4, Muhammad Karyana 1,5, Nurhayati Lukman 1, Herman Kosasih 1*, Ahnika Kline 6 and Chuen-Yen Lau 7 1 Indonesia Research Partnership on Infectious Disease, Jakarta, Indonesia, 2 Tangerang District Hospital, Tangerang, Indonesia, 3 Dr. Kariadi Hospital/Diponegoro University, Semarang, Indonesia, 4 Dr. Sardjito Hospital/Universitas Gadjah Mada, Yogyakarta, Indonesia, 5 National Institute of Health Research and Development, Ministry of Health, Republic of Indonesia, Jakarta, Indonesia, 6 National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States, 7 National Cancer Institute, National Institutes of Health, Bethesda, MD, United States Determining the causative pathogen(s) of community-acquired pneumonia (CAP) in Edited by: children remains a challenge despite advances in diagnostic methods. Currently available Yutaka Yoshii, The Jikei University School of guidelines generally recommend empiric antimicrobial therapy when the specific etiology Medicine, Japan is unknown. However, shifts in epidemiology, emergence of new pathogens, and Reviewed by: increasing antimicrobial resistance underscore the importance of identifying causative Andrew Conway Morris, University of Cambridge, pathogen(s). Although viral CAP among children is increasingly recognized, distinguishing United Kingdom viral from bacterial etiologies remains difficult. Obtaining high quality samples from Raymond Nagi Haddad, infected lung tissue is typically the limiting factor. Additionally, interpretation of results Assistance Publique Hopitaux De Paris, France from routinely collected specimens (blood, sputum, and nasopharyngeal swabs) is *Correspondence: complicated by bacterial colonization and prolonged shedding of incidental respiratory Herman Kosasih viruses.
    [Show full text]
  • Pneumonia (Community-Acquired): Antimicrobial Prescribing
    DRAFT FOR CONSULTATION 1 Pneumonia (community-acquired): 2 antimicrobial prescribing 3 NICE guideline 4 Draft for consultation, February 2019 This guideline sets out an antimicrobial prescribing strategy for community-acquired pneumonia. It aims to optimise antibiotic use and reduce antibiotic resistance. The recommendations in this guideline are for the use of antibiotics to manage community-acquired pneumonia in adults, young people and children. It does not cover diagnosis. See the NICE guideline on pneumonia in adults for other recommendations on diagnosis and management of community-acquired pneumonia, including microbiological tests. For managing other lower respiratory tract infections (including hospital-acquired pneumonia), see our web page on respiratory conditions. See a 3-page visual summary of the recommendations, including tables to support prescribing decisions. Who is it for? • Health care professionals • People with community-acquired pneumonia, their families and carers The guideline contains: • the draft recommendations • summary of the evidence. Information about how the guideline was developed is on the guideline’s page on the NICE website. This includes the full evidence review, details of the committee and any declarations of interest. Community-acquired pneumonia: antimicrobial prescribing guidance Page 1 of 30 DRAFT FOR CONSULTATION 1 Recommendations 2 1.1 Managing community-acquired pneumonia 3 Treatment for adults 4 1.1.1 Offer an antibiotic(s) for adults with community-acquired 5 pneumonia within 4 hours of
    [Show full text]
  • Antibiotics & Common Infections
    Antibiotics & Common Infections Stewardship, Effectiveness, Safety & Clinical Pearls October 2016 ANTIMICROBIAL RELATED LINKS ANTIMICROBIAL STEWARDSHIP GETTING STRATEGIES TO WORK - REAL WORLD CANADIAN GUIDELINES There are world-wide efforts that look • Public, patient & provider education for strategies to deal with the challenge of over time to change expectations Bugs & Drugs (Alberta/BC): growing antimicrobial resistance. How can • Realistic appreciation for viral versus http://www.bugsanddrugs.ca/ we all work together to be stewards of this bacterial etiologies important, but limited resource? • Delayed prescriptions for select MUMS Guidelines – “Orange Book” conditions with instructions to fill only (Anti-infective Review Panel): SELECT ANTIBIOTIC RESISTANT if symptoms do not resolve or condition http://www.mumshealth.com PATHOGENS OF MAJOR CONCERN worsens. (Offer to those who value convenience.) PATIENT RESOURCES • methicillin-resistant Staphylococcus aureus (MRSA) • “It’s easy to prescribe antibiotics. It i Canadian Antibiotic Awareness: • multi-drug resistant Streptococcus takes time, energy & trust not to do so.” http://www.antibioticawareness.ca pneumonia (MRSP) Success lies in changing the culture & the which includes: • vancomycin-resistant enterococci (VRE) understanding of antibiotic limitations, • multi-drug resistant Escherichia coli & benefits & harms. 1. Viral Prescription Pad for respiratory other gram negative bacteria (e.g. ESBL) infections (download or order for free); ANTIBIOTIC HARMS – UNDERAPPRECIATED provides information about symptomatic KEY STRATEGIES FOR REDUCING ANTIBIOTICS Q To the Patient relief for viral infections and indicates when • vaccinations to prevent infections and • 1 in 5 emergency room visits for adverse patients should consider a return visit. decrease antibiotic use drug events (ADEs) are from antibiotics. • practice and educate on infection • Antibiotics are the most common cause of 2.
    [Show full text]
  • Identification and Prevalence of Bacteria Causing Atypical
    Identification and prevalence of bacteria causing atypical pneumonia in patients with severe respiratory illness and influenza-like illness in South Africa, 2012-2013 Maimuna Carrim Dissertation submitted to the Faculty of Health Sciences, University of the Witwatersrand, Johannesburg in fulfillment of the requirements for the degree of Master of Science in Medicine. Johannesburg, 2015 DECLARATION I, Maimuna Carrim, declare that this dissertation is my own work. Experiments described were conducted under the supervision of Dr Nicole Wolter and Dr Anne von Gottberg at the Centre for Respiratory Diseases and Meningitis – Bacteriology Unit, National Institute for Communicable Diseases, National Health Laboratory Service, Johannesburg. It is being submitted for the degree of Master of Science in Medicine to the Faculty of Health Sciences at the University of the Witwatersrand, Johannesburg. It has not been submitted before for any degree or examination to this or any other university. 16th day of September 2015 i DEDICATION For mum and dad, My guiding lights Who helped me soar to great heights My well-wishers, my protectors My pillars of strength On whom I completely depend My rocks, my greatest fans I owe it all to you Thank you! ii PUBLICATIONS IN PREPARATION M. Carrim, A. J. Benitez, N. Wolter, M. du Plessis, S. Walaza, F. Moosa, M. Diaz, B. Wolff, M. Papo, H. Dawood, E. Variava, C. Cohen, J. M. Winchell and A. von Gottberg. Molecular identification and characterisation of Mycoplasma pneumoniae in South Africa, 2012 – 2013. (Article in preparation). N. Wolter, M. Carrim, C. Cohen, S. Tempia, S. Walaza, P. Sahr, I. Kennedy, L.
    [Show full text]
  • Community-Acquired Pneumonia in Adults
    SEPTEMBER 2017 DRUG ANTIBIOTICS COMMUNITY-ACQUIRED PNEUMONIA IN ADULTS This optimal usage guide is mainly intended for primary care health professionnals. It is provided for information purposes only and should not replace the clinician’s judgement. The recommendations were developed using a systematic approach and are supported by the scientific literature and the knowledge and experience of Quebec clinicians and experts. For more details, go to inesss.qc.ca. GENERAL INFORMATIONS IMPORTANT CONSIDERATIONS Pneumonia is one of the ten leading causes of death in Canada. Between 20 and 40 % of pneumonia cases have to be treated in hospital. In North America, approximately 20 % of confirmed pneumonia cases are caused by atypical pathogens. COMMUNITY-ACQUIRED PNEUMONIA IN ADULTS PATHOGENS Pathogens most frequently involved Other pathogens Staphylococcus aureus Streptococcus pneumoniae Gram-negative bacilli Haemophilus influenzae Atypical : Respiratory viruses (e.g., influenza A and B, respiratory syncytial virus [RSV]) • Mycoplasma pneumoniae • Chlamydophila pneumoniae ! The risk of viral infections is higher during Legionella spp • the flu season PREVENTIVE MEASURES Hand-washing Smoking cessation Vaccination • Pneumococcal vaccine Vaccination of at-risk populations1 should be encouraged. Two types of vaccine with a demonstrated protective effect against invasive pneumococcal disease are available: conjugate and polysaccharide. To make an informed choice, consult the Quebec Immunization Protocol (PIQ). Stay up to date at inesss.qc.ca • Influenza vaccine The influenza vaccine may have a protective effect against pneumonia in the elderly (> 65 years) living in the community. 1. Age > 65 years; anatomical or functional asplenia; immunocompromised state; renal failure; chronic disease or chronic condition (lung, heart or liver disease); diabetes.
    [Show full text]
  • New Concepts of Mycoplasma Pneumoniae Infections in Children
    Pediatric Pulmonology 36:267–278 (2003) New Concepts of Mycoplasma pneumoniae Infections in Children Ken B. Waites, MD* INTRODUCTION trilayered cell membrane and do not possess a cell wall. The permanent lack of a cell-wall barrier makes the The year 2002 marked the fortieth anniversary of the mycoplasmas unique among prokaryotes, renders them first published report describing the isolation and char- insensitive to the activity of beta-lactam antimicrobials, acterization of Mycoplasma pneumoniae as the etiologic prevents them from staining by Gram stain, makes them agent of primary atypical pneumonia by Chanock et al.1 very susceptible to drying, and influences their pleo- Lack of understanding regarding the basic biology of morphic appearance. The extremely small genome and mycoplasmas and the inability to readily detect them in limited biosynthetic capabilities explain their parasitic or persons with respiratory disease has led to many mis- saprophytic existence and fastidious growth requirements. understandings about their role as human pathogens. Attachment of MP to host cells in the respiratory tract Formerly, infections by Mycoplasma pneumoniae (MP) following inhalation of infectious organisms is a pre- were considered to occur mainly in children, adolescents, requisite for colonization and infection.2 Cytadherence, and young adults, and to be infrequent, confined to the mediated by the P1 adhesin protein and other accessory respiratory tract, and largely self-limiting. Outcome data proteins, protects the mycoplasma from removal by the from children and adults with community-acquired pne- mucociliary clearance mechanism. Cytadherence is fol- umonias (CAP) proven to be due to MP provided evidence lowed by induction of ciliostasis, exfoliation of the that it is time to change these misconceived notions.
    [Show full text]
  • Acute Pneumonia and Importance of Atypical Bacteria
    Acute Pneumonia and Importance of Atypical Bacteria I. Boyadjiev, M. Lone, and C. Martin z Introduction The term and concept of atypical pneumonia appeared in the 1940s following ob- servations of penicillin-resistant pneumonia [1]. Despite the identification of a large number of microorganisms, the challenge of isolating so-called `atypical' bacteria is the principal cause of failure of the etiologic diagnosis of pneumonia. These patho- genic agents in the tracheobronchial tree include a large variety of bacteria, viruses Table 1. Advantages and disadvantages of the different microbiologic diagnostic examinations Examination Advantages Disadvantages z Chest x-ray Distinction pneumonia/bronchitis Cost z Blood culture Good specificity for S. pneumoniae Poor sensitivity z Direct Gram stain Rapidity; isolation of the Does not provide the type of predominant pathogen microorganism z Cell culture Specificity; isolation and 24 to 72 hours, variable sensitivity identification of the strain; antibiotic profile Antigen tests ± immunofluorescence detection Rapidity, very good specificity Subjective reading, ± ELISA and related automation Sensitivity=80% Specificity=95% Confirmation test necessary z Antigen detection Very good specificity Specific to Legionella pneumophila Urinary Legionella z Antigen detection Very good specificity Rare pathogen Urinary Histoplasma Molecular tests z Simple hybridization PCR Automation, sensitivity and Sensitivity and specificity=ELISA specificity Sensitivity to enzyme inhibitors (false negatives) Contamination problems, Cumbersome technique z Suicide PCR Very good sensitivity, Cost, Cumbersome technique specificity=100% 572 I. Boyadjiev et al. and even protozoa. Among atypical bacteria, Chlamydia pneumoniae, Mycoplasma pneumoniae, Legionella pneumoniae, Bordetella pertussis, and Coxiella burnetii are the most widespread. Numerous other bacteria are emerging pathogenic species whose virulence is currently being evaluated.
    [Show full text]
  • Community-Acquired Pneumonia and Hospital- Acquired Pneumonia
    Community-acquired Pneumonia and Hospital- acquired Pneumonia a, b a Charles W. Lanks, MD *, Ali I. Musani, MD , David W. Hsia, MD KEYWORDS Community-acquired pneumonia Hospital-acquired pneumonia Pneumonia CAP HAP KEY POINTS Pneumonia is a common disease that requires a deep understanding of pathophysiology, epidemiology, and pharmacology to properly manage. Diagnostic strategies for pneumonia range from simple to highly complex depending on disease severity and likelihood of altering the empiric antibiotic regimen. Pneumonia management plans are tailored to each individual patient encounter and incor- porate knowledge of health care setting, pathogen type, and risk factors for antibiotic resistance. Complications from pneumonia are common and should prompt consultation with a pul- monary specialist when necessary. INTRODUCTION Pneumonia is consistently among the leading causes of morbidity and mortality world- wide.1 Defined as acute infection of the lung parenchyma, it is caused by a wide va- riety of microorganisms, including bacteria, viruses, and fungi.2 Common categories of pneumonia include: Community-acquired pneumonia (CAP): infection acquired outside of the hospi- tal setting. Hospital-acquired pneumonia (HAP): infection acquired after at least 48 hours of hospitalization.3 Disclosure: The authors have no financial conflicts of interest. a Division of Respiratory and Critical Care Physiology and Medicine, Harbor-UCLA Medical Center, 1000 West Carson Street, Box 402, Torrance, CA 90509, USA; b Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Hospital, 12631 East 17th Street, Office #8102, Aurora, CO 80045, USA * Corresponding author. E-mail address: [email protected] Med Clin N Am - (2019) -–- https://doi.org/10.1016/j.mcna.2018.12.008 medical.theclinics.com 0025-7125/19/ª 2019 Elsevier Inc.
    [Show full text]
  • NMNPC Superbugs
    3/17/19 Super Bugs Need Super Drugs, or Do They? George Dresden, MSN, ACNP, DNP Objectives ØDetermine which antibiotic to use based on pharmacodynamic category: time dependent, concentration dependent, time dependent/concentration enhanced ØImprove your prescribing of antibiotics for bacteria with resistance to beta lactams, including penicillin. ØAssess for all gram negative and positive bacteria, as well as viral etiologies with secondary bacterial infections. Recognize, isolate, and treat the superbugs early. ØIn immunocompromised patients test for fungal etiologies, and be prepared to treat them. Differentiate between opportunistic and non-opportunistic systemic infections. Antibiotic/Antimicrobial Resistance Biggest Threats in 2013 Urgent Threats Ø Drug-resistant Shigella Ø Carbapenem-resistant Enterobacteriaeae (CRE) Ø Methicillin-resistant Staphyococcus aureus (MRSA) Ø Drug-resistant Neisseria Gonorrhoeae Ø Drug-resistant Streptococcus pneumoniae Ø Clostridiodes Difficile Ø Drug-resistant Tuberculosis Serious Threats Ø Multidrug-resistant Acinetobacter Concerning Threats Ø Drug-resistant Campylobacter Ø Vancomycin-resistant Staphylocccus aureus (VRSA) Ø Fluconazole-resistant Candida Ø Erythromycin-Resistant Group A Streptococcus Ø Extended-spectrum Beta-lactamase producing Ø Clindamycin-resistant Group B Streptococcus Enterobacteriaceae Ø Vancomycin-resistant Enterococcus (VRE) Ø Multidrug-resistant Pseudomonas aerginosa CDC is working toward releasing an updated Threats Ø Drug-resistant non-typhoidal Salmonella Report in the Fall
    [Show full text]
  • The Microbiology of Ventilator-Associated Pneumonia
    The Microbiology of Ventilator-Associated Pneumonia David R Park MD Introduction to the Microbiology of Ventilator-Associated Pneumonia Medical Microbiology of VAP Overview of VAP Pathogenesis and Changes in Microbial Flora of Hospitalized Patients Features of Specific Common VAP Pathogens The Relative Clinical Importance of Various Bacterial Causes of VAP The Prevalence of Routine Bacterial Pathogens in VAP Multidrug-Resistant VAP Pathogens Variability of Bacterial Causes of VAP Evaluation of Routine Bacterial VAP Pathogens at a Local Institution The Importance of Other Bacteria in VAP Anaerobic Bacteria in VAP Commensal Bacteria in VAP Atypical Bacteria as VAP Pathogens Legionella Species Legionella-Like Amoebal Pathogens Mycoplasma and Chlamydia Species Role of Nonbacterial Pathogens in VAP Viruses Fungi Miscellaneous Other Causes of VAP The Microbiology of VAP in Particular Clinical Circumstances Determining the Importance of Differences in Microbiology Patterns VAP in Patients With ARDS VAP in Patients After Tracheotomy VAP Soon After Intubation VAP in Patients With COPD VAP in Patients With Traumatic Injuries VAP in Patients With Burns VAP in Immunocompromised Patients Summary Ventilator-associated pneumonia (VAP) is a common complication of ventilatory support for pa- tients with acute respiratory failure and is associated with increased morbidity, mortality, and costs. Awareness of the microbiology of VAP is essential for selecting optimal antibiotic therapy and improving these outcomes. The specific microbial causes of VAP are many and varied. Most cases of VAP are caused by bacterial pathogens that normally colonize the oropharynx and gut, or that are acquired via transmission by health-care workers from environmental surfaces or from other patients. Common pathogens include Pseudomonas species and other highly resistant Gram-nega- tive bacilli, staphylococci, the Enterobacteriaceae, streptococci, and Haemophilus species.
    [Show full text]