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Notices of the American Mathematical Society
ISSN 0002-9920 of the American Mathematical Society February 2006 Volume 53, Number 2 Math Circles and Olympiads MSRI Asks: Is the U.S. Coming of Age? page 200 A System of Axioms of Set Theory for the Rationalists page 206 Durham Meeting page 299 San Francisco Meeting page 302 ICM Madrid 2006 (see page 213) > To mak• an antmat•d tub• plot Animated Tube Plot 1 Type an expression in one or :;)~~~G~~~t;~~i~~~~~~~~~~~~~:rtwo ' 2 Wrth the insertion point in the 3 Open the Plot Properties dialog the same variables Tl'le next animation shows • knot Plot 30 Animated + Tube Scientific Word ... version 5.5 Scientific Word"' offers the same features as Scientific WorkPlace, without the computer algebra system. Editors INTERNATIONAL Morris Weisfeld Editor-in-Chief Enrico Arbarello MATHEMATICS Joseph Bernstein Enrico Bombieri Richard E. Borcherds Alexei Borodin RESEARCH PAPERS Jean Bourgain Marc Burger James W. Cogdell http://www.hindawi.com/journals/imrp/ Tobias Colding Corrado De Concini IMRP provides very fast publication of lengthy research articles of high current interest in Percy Deift all areas of mathematics. All articles are fully refereed and are judged by their contribution Robbert Dijkgraaf to the advancement of the state of the science of mathematics. Issues are published as S. K. Donaldson frequently as necessary. Each issue will contain only one article. IMRP is expected to publish 400± pages in 2006. Yakov Eliashberg Edward Frenkel Articles of at least 50 pages are welcome and all articles are refereed and judged for Emmanuel Hebey correctness, interest, originality, depth, and applicability. Submissions are made by e-mail to Dennis Hejhal [email protected]. -
Algorithms for Computational Biology 8Th International Conference, Alcob 2021 Missoula, MT, USA, June 7–11, 2021 Proceedings
Lecture Notes in Bioinformatics 12715 Subseries of Lecture Notes in Computer Science Series Editors Sorin Istrail Brown University, Providence, RI, USA Pavel Pevzner University of California, San Diego, CA, USA Michael Waterman University of Southern California, Los Angeles, CA, USA Editorial Board Members Søren Brunak Technical University of Denmark, Kongens Lyngby, Denmark Mikhail S. Gelfand IITP, Research and Training Center on Bioinformatics, Moscow, Russia Thomas Lengauer Max Planck Institute for Informatics, Saarbrücken, Germany Satoru Miyano University of Tokyo, Tokyo, Japan Eugene Myers Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany Marie-France Sagot Université Lyon 1, Villeurbanne, France David Sankoff University of Ottawa, Ottawa, Canada Ron Shamir Tel Aviv University, Ramat Aviv, Tel Aviv, Israel Terry Speed Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Martin Vingron Max Planck Institute for Molecular Genetics, Berlin, Germany W. Eric Wong University of Texas at Dallas, Richardson, TX, USA More information about this subseries at http://www.springer.com/series/5381 Carlos Martín-Vide • Miguel A. Vega-Rodríguez • Travis Wheeler (Eds.) Algorithms for Computational Biology 8th International Conference, AlCoB 2021 Missoula, MT, USA, June 7–11, 2021 Proceedings 123 Editors Carlos Martín-Vide Miguel A. Vega-Rodríguez Rovira i Virgili University University of Extremadura Tarragona, Spain Cáceres, Spain Travis Wheeler University of Montana Missoula, MT, USA ISSN 0302-9743 ISSN 1611-3349 (electronic) Lecture Notes in Bioinformatics ISBN 978-3-030-74431-1 ISBN 978-3-030-74432-8 (eBook) https://doi.org/10.1007/978-3-030-74432-8 LNCS Sublibrary: SL8 – Bioinformatics © Springer Nature Switzerland AG 2021 This work is subject to copyright. -
Strength in Numbers: the Rising of Academic Statistics Departments In
Agresti · Meng Agresti Eds. Alan Agresti · Xiao-Li Meng Editors Strength in Numbers: The Rising of Academic Statistics DepartmentsStatistics in the U.S. Rising of Academic The in Numbers: Strength Statistics Departments in the U.S. Strength in Numbers: The Rising of Academic Statistics Departments in the U.S. Alan Agresti • Xiao-Li Meng Editors Strength in Numbers: The Rising of Academic Statistics Departments in the U.S. 123 Editors Alan Agresti Xiao-Li Meng Department of Statistics Department of Statistics University of Florida Harvard University Gainesville, FL Cambridge, MA USA USA ISBN 978-1-4614-3648-5 ISBN 978-1-4614-3649-2 (eBook) DOI 10.1007/978-1-4614-3649-2 Springer New York Heidelberg Dordrecht London Library of Congress Control Number: 2012942702 Ó Springer Science+Business Media New York 2013 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. -
Are Profile Hidden Markov Models Identifiable?
Are Profile Hidden Markov Models Identifiable? Srilakshmi Pattabiraman Tandy Warnow Department of Electrical and Computer Engineering Department of Computer Science University of Illinois at Urbana-Champaign University of Illinois at Urbana-Champaign Urbana, Illinois Urbana, Illinois [email protected] [email protected] ABSTRACT 1 INTRODUCTION Profile Hidden Markov Models (HMMs) are graphical models that Profile Hidden Markov Models (HMMs) are arguably themost can be used to produce finite length sequences from a distribution. common statistical models in bioinformatics. Originally introduced In fact, although they were only introduced for bioinformatics 25 by Haussler and colleagues in [10, 12], and then expanded later years ago (by Haussler et al., Hawaii International Conference on in many subsequent texts [4–6, 9, 11, 21, 25], profile HMMs are Systems Science 1993), they are arguably the most commonly used now used in many analytical steps in biological sequence analysis statistical model in bioinformatics, with multiple applications, in- [15, 17–19, 22]. cluding protein structure and function prediction, classifications Profile Hidden Markov models are graphical models with match of novel proteins into existing protein families and superfamilies, states, insertion states, and deletion states; and the match and in- metagenomics, and multiple sequence alignment. The standard use sertion states emit letters from an underlying alphabet Σ (i.e., Σ of profile HMMs in bioinformatics has two steps: first a profile may be the 20 amino acids, the four nucleotides, or some other HMM is built for a collection of molecular sequences (which may set of symbols). In the standard form presented in [4] (widely in not be in a multiple sequence alignment), and then the profile HMM use in bioinformatics applications), each profile Hidden Markov is used in some subsequent analysis of new molecular sequences. -
Prizes and Awards Session
PRIZES AND AWARDS SESSION Wednesday, July 12, 2021 9:00 AM EDT 2021 SIAM Annual Meeting July 19 – 23, 2021 Held in Virtual Format 1 Table of Contents AWM-SIAM Sonia Kovalevsky Lecture ................................................................................................... 3 George B. Dantzig Prize ............................................................................................................................. 5 George Pólya Prize for Mathematical Exposition .................................................................................... 7 George Pólya Prize in Applied Combinatorics ......................................................................................... 8 I.E. Block Community Lecture .................................................................................................................. 9 John von Neumann Prize ......................................................................................................................... 11 Lagrange Prize in Continuous Optimization .......................................................................................... 13 Ralph E. Kleinman Prize .......................................................................................................................... 15 SIAM Prize for Distinguished Service to the Profession ....................................................................... 17 SIAM Student Paper Prizes .................................................................................................................... -
Computational Biology and Bioinformatics
Vol. 30 ISMB 2014, pages i1–i2 BIOINFORMATICS EDITORIAL doi:10.1093/bioinformatics/btu304 Editorial This special issue of Bioinformatics serves as the proceedings of The conference used a two-tier review system, a continuation the 22nd annual meeting of Intelligent Systems for Molecular and refinement of a process begun with ISMB 2013 in an effort Biology (ISMB), which took place in Boston, MA, July 11–15, to better ensure thorough and fair reviewing. Under the revised 2014 (http://www.iscb.org/ismbeccb2014). The official confer- process, each of the 191 submissions was first reviewed by at least ence of the International Society for Computational Biology three expert referees, with a subset receiving between four and (http://www.iscb.org/), ISMB, was accompanied by 12 Special eight reviews, as needed. These formal reviews were frequently Interest Group meetings of one or two days each, two satellite supplemented by online discussion among reviewers and Area meetings, a High School Teachers Workshop and two half-day Chairs to resolve points of dispute and reach a consensus on tutorials. Since its inception, ISMB has grown to be the largest each paper. Among the 191 submissions, 29 were conditionally international conference in computational biology and bioinfor- accepted for publication directly from the first round review Downloaded from matics. It is expected to be the premiere forum in the field for based on an assessment of the reviewers that the paper was presenting new research results, disseminating methods and tech- clearly above par for the conference. A subset of 16 papers niques and facilitating discussions among leading researchers, were viewed as potentially in the top tier but raised significant practitioners and students in the field. -
A Beautiful Math : John Nash, Game Theory, and the Modern Quest for a Code of Nature / Tom Siegfried
A BEAUTIFULA BEAUTIFUL MATH MATH JOHN NASH, GAME THEORY, AND THE MODERN QUEST FOR A CODE OF NATURE TOM SIEGFRIED JOSEPH HENRY PRESS Washington, D.C. Joseph Henry Press • 500 Fifth Street, NW • Washington, DC 20001 The Joseph Henry Press, an imprint of the National Academies Press, was created with the goal of making books on science, technology, and health more widely available to professionals and the public. Joseph Henry was one of the founders of the National Academy of Sciences and a leader in early Ameri- can science. Any opinions, findings, conclusions, or recommendations expressed in this volume are those of the author and do not necessarily reflect the views of the National Academy of Sciences or its affiliated institutions. Library of Congress Cataloging-in-Publication Data Siegfried, Tom, 1950- A beautiful math : John Nash, game theory, and the modern quest for a code of nature / Tom Siegfried. — 1st ed. p. cm. Includes bibliographical references and index. ISBN 0-309-10192-1 (hardback) — ISBN 0-309-65928-0 (pdfs) 1. Game theory. I. Title. QA269.S574 2006 519.3—dc22 2006012394 Copyright 2006 by Tom Siegfried. All rights reserved. Printed in the United States of America. Preface Shortly after 9/11, a Russian scientist named Dmitri Gusev pro- posed an explanation for the origin of the name Al Qaeda. He suggested that the terrorist organization took its name from Isaac Asimov’s famous 1950s science fiction novels known as the Foun- dation Trilogy. After all, he reasoned, the Arabic word “qaeda” means something like “base” or “foundation.” And the first novel in Asimov’s trilogy, Foundation, apparently was titled “al-Qaida” in an Arabic translation. -
Research News
Computing Research News COMPUTING RESEARCH ASSOCIATION, CELEBRATING 40 YEARS OF SERVICE TO THE COMPUTING RESEARCH COMMUNITY JUNE 2013 Vol. 25 / No. 6 Announcements 2 Coalition for National Science Funding 2 CRA Announces Outstanding Undergraduate Researcher Award Winners 3 Computing Research in Action 5 CERP Infographic 6 NSF Funding Opportunity 6 CRA Recognizes Participants 7 CRA Board Members 16 CRA Board Officers 16 CRA Staff 16 Professional Opportunities 17 COMPUTING RESEARCH NEWS, JUNE 2013 Vol. 25 / No. 6 Announcements 2012 Taulbee Report Updated May 15, 2013 Corrected Table F6 Click here to download updated version CRA Releases Latest Research Issue Report New Technology-based Models for Postsecondary Learning: Conceptual Frameworks and Research Agendas The report details the findings of a National Science Foundation-Sponsored Computing Research Association Workshop held at MIT on January 9-11, 2013. From the report: “Advances in technology and in knowledge about expertise, learning, and assessment have the potential to reshape the many forms of education and training past matriculation from high school. In the next decade, higher education, military and workplace training, and professional development must all transform to exploit the opportunities of a new era, leveraging emerging technology-based models that can make learning more efficient and possibly improve student support, all at lower cost for a broader range of learners.” The report is now available as a pdf at http://cra.org/resources/research-issues/. Slides from the presentation at NSF on April 19, 2013 are also available. Investments in STEM Research and Education: Fueling American Innovation On May 7, at the Rayburn House Office Building in Brett Bode from the National Center for Supercomputing Washington, DC, the Coalition for National Science Funding Applications at University of Illinois Urbana-Champaign were (CNSF) held its 19th annual exhibition and reception, on hand to talk about the “Blue Waters” project. -
Brief 2007.Pdf
Brief (1-10-2007) Read Brief on the Web at http://www.umn.edu/umnnews/Publications/Brief/Brief_01102007.html . Vol. XXXVII No. 1; Jan. 10, 2007 Editor: Gayla Marty, [email protected] INSIDE THIS ISSUE --Regents approved UMTC stadium design and revised cost Jan. 3. --CAPA communications survey is now open: P&A staff invited to participate. --Founding director of the new campuswide UMTC honors program is Serge Rudaz. --People: VP for university relations Karen Himle began Jan. 9, and more. Campus Announcements and Events University-wide | Crookston | Duluth | Morris | Rochester | Twin Cities THE BOARD OF REGENTS APPROVED A TCF BANK STADIUM DESIGN for UMTC in a special session Jan. 3. The 50,000-seat stadium will be a blend of brick, stone, and glass in a traditional collegiate horseshoe shape, open to the downtown Minneapolis skyline, with the potential to expand to 80,000 seats. A revised cost of $288.5 million was also approved--an addition of $39.8 million to be financed without added expense to taxpayers, students, or the U's academic mission. Read more at http://www.umn.edu/umnnews/Feature_Stories/Regents_approve_stadium_design.html . COUNCIL OF ACADEMIC PROFESSIONALS AND ADMINISTRATORS (CAPA): The 2006-07 CAPA communications survey is the central way for CAPA to improve communications with U academic professional and administrative (P&A) staff statewide. Committee chair John Borchert urges P&A staff to participate. Read more and link to the survey at http://www.umn.edu/umnnews/Faculty_Staff_Comm/Council_of_Academic_Professionals_and_Administrators/ Survey_begins.html . FOUNDING DIRECTOR OF THE NEW UMTC HONORS PROGRAM is Serge Rudaz, professor and director of undergraduate studies, School of Physics and Astronomy. -
I S C B N E W S L E T T
ISCB NEWSLETTER FOCUS ISSUE {contents} President’s Letter 2 Member Involvement Encouraged Register for ISMB 2002 3 Registration and Tutorial Update Host ISMB 2004 or 2005 3 David Baker 4 2002 Overton Prize Recipient Overton Endowment 4 ISMB 2002 Committees 4 ISMB 2002 Opportunities 5 Sponsor and Exhibitor Benefits Best Paper Award by SGI 5 ISMB 2002 SIGs 6 New Program for 2002 ISMB Goes Down Under 7 Planning Underway for 2003 Hot Jobs! Top Companies! 8 ISMB 2002 Job Fair ISCB Board Nominations 8 Bioinformatics Pioneers 9 ISMB 2002 Keynote Speakers Invited Editorial 10 Anna Tramontano: Bioinformatics in Europe Software Recommendations11 ISCB Software Statement volume 5. issue 2. summer 2002 Community Development 12 ISCB’s Regional Affiliates Program ISCB Staff Introduction 12 Fellowship Recipients 13 Awardees at RECOMB 2002 Events and Opportunities 14 Bioinformatics events world wide INTERNATIONAL SOCIETY FOR COMPUTATIONAL BIOLOGY A NOTE FROM ISCB PRESIDENT This newsletter is packed with information on development and dissemination of bioinfor- the ISMB2002 conference. With over 200 matics. Issues arise from recommendations paper submissions and over 500 poster submis- made by the Society’s committees, Board of sions, the conference promises to be a scientific Directors, and membership at large. Important feast. On behalf of the ISCB’s Directors, staff, issues are defined as motions and are discussed EXECUTIVE COMMITTEE and membership, I would like to thank the by the Board of Directors on a bi-monthly Philip E. Bourne, Ph.D., President organizing committee, local organizing com- teleconference. Motions that pass are enacted Michael Gribskov, Ph.D., mittee, and program committee for their hard by the Executive Committee which also serves Vice President work preparing for the conference. -
Jennifer Tour Chayes March 2016 CURRICULUM VITAE Office
Jennifer Tour Chayes March 2016 CURRICULUM VITAE Office Address: Microsoft Research New England 1 Memorial Drive Cambridge, MA 02142 e-mail: [email protected] Personal: Born September 20, 1956, New York, New York Education: 1979 B.A., Physics and Biology, Wesleyan University 1983 Ph.D., Mathematical Physics, Princeton University Positions: 1983{1985 Postdoctoral Fellow in Mathematical Physics, Departments of Mathematics and Physics, Harvard University 1985{1987 Postdoctoral Fellow, Laboratory of Atomic and Solid State Physics and Mathematical Sciences Institute, Cornell University 1987{1990 Associate Professor, Department of Mathematics, UCLA 1990{2001 Professor, Department of Mathematics, UCLA 1997{2005 Senior Researcher and Head, Theory Group, Microsoft Research 1997{2008 Affiliate Professor, Dept. of Physics, U. Washington 1999{2008 Affiliate Professor, Dept. of Mathematics, U. Washington 2005{2008 Principal Researcher and Research Area Manager for Mathematics, Theoretical Computer Science and Cryptography, Microsoft Research 2008{ Managing Director, Microsoft Research New England 2010{ Distinguished Scientist, Microsoft Corporation 2012{ Managing Director, Microsoft Research New York City Long-Term Visiting Positions: 1994-95, 1997 Member, Institute for Advanced Study, Princeton 1995, May{July ETH, Z¨urich 1996, Sept.{Dec. AT&T Research, New Jersey Awards and Honors: 1977 Johnston Prize in Physics, Wesleyan University 1979 Graham Prize in Natural Sciences & Mathematics, Wesleyan University 1979 Graduated 1st in Class, Summa Cum Laude, -
Curriculum Vitae
Curriculum Vitae Tandy Warnow Grainger Distinguished Chair in Engineering 1 Contact Information Department of Computer Science The University of Illinois at Urbana-Champaign Email: [email protected] Homepage: http://tandy.cs.illinois.edu 2 Research Interests Phylogenetic tree inference in biology and historical linguistics, multiple sequence alignment, metage- nomic analysis, big data, statistical inference, probabilistic analysis of algorithms, machine learning, combinatorial and graph-theoretic algorithms, and experimental performance studies of algorithms. 3 Professional Appointments • Co-chief scientist, C3.ai Digital Transformation Institute, 2020-present • Grainger Distinguished Chair in Engineering, 2020-present • Associate Head for Computer Science, 2019-present • Special advisor to the Head of the Department of Computer Science, 2016-present • Associate Head for the Department of Computer Science, 2017-2018. • Founder Professor of Computer Science, the University of Illinois at Urbana-Champaign, 2014- 2019 • Member, Carl R. Woese Institute for Genomic Biology. Affiliate of the National Center for Supercomputing Applications (NCSA), Coordinated Sciences Laboratory, and the Unit for Criticism and Interpretive Theory. Affiliate faculty member in the Departments of Mathe- matics, Electrical and Computer Engineering, Bioengineering, Statistics, Entomology, Plant Biology, and Evolution, Ecology, and Behavior, 2014-present. • National Science Foundation, Program Director for Big Data, July 2012-July 2013. • Member, Big Data Senior Steering Group of NITRD (The Networking and Information Tech- nology Research and Development Program), subcomittee of the National Technology Council (coordinating federal agencies), 2012-2013 • Departmental Scholar, Institute for Pure and Applied Mathematics, UCLA, Fall 2011 • Visiting Researcher, University of Maryland, Spring and Summer 2011. 1 • Visiting Researcher, Smithsonian Institute, Spring and Summer 2011. • Professeur Invit´e,Ecole Polytechnique F´ed´erale de Lausanne (EPFL), Summer 2010.