Mouse Models for Microphthalmia, Anophthalmia and Cataracts
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LHX2 (NM 004789) Human Tagged ORF Clone Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for RC210786L4 LHX2 (NM_004789) Human Tagged ORF Clone Product data: Product Type: Expression Plasmids Product Name: LHX2 (NM_004789) Human Tagged ORF Clone Tag: mGFP Symbol: LHX2 Synonyms: hLhx2; LH2 Vector: pLenti-C-mGFP-P2A-Puro (PS100093) E. coli Selection: Chloramphenicol (34 ug/mL) Cell Selection: Puromycin ORF Nucleotide The ORF insert of this clone is exactly the same as(RC210786). Sequence: Restriction Sites: SgfI-MluI Cloning Scheme: ACCN: NM_004789 ORF Size: 1218 bp This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 LHX2 (NM_004789) Human Tagged ORF Clone – RC210786L4 OTI Disclaimer: The molecular sequence of this clone aligns with the gene accession number as a point of reference only. However, individual transcript sequences of the same gene can differ through naturally occurring variations (e.g. polymorphisms), each with its own valid existence. This clone is substantially in agreement with the reference, but a complete review of all prevailing variants is recommended prior to use. More info OTI Annotation: This clone was engineered to express the complete ORF with an expression tag. Expression varies depending on the nature of the gene. RefSeq: NM_004789.3 RefSeq Size: 2416 bp RefSeq ORF: 1221 bp Locus ID: 9355 UniProt ID: P50458, B3KNJ5 Domains: homeobox, LIM Protein Families: Transcription Factors MW: 44.4 kDa Gene Summary: This gene encodes a protein belonging to a large protein family, members of which carry the LIM domain, a unique cysteine-rich zinc-binding domain. -
Environmental Influences on Endothelial Gene Expression
ENDOTHELIAL CELL GENE EXPRESSION John Matthew Jeff Herbert Supervisors: Prof. Roy Bicknell and Dr. Victoria Heath PhD thesis University of Birmingham August 2012 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. ABSTRACT Tumour angiogenesis is a vital process in the pathology of tumour development and metastasis. Targeting markers of tumour endothelium provide a means of targeted destruction of a tumours oxygen and nutrient supply via destruction of tumour vasculature, which in turn ultimately leads to beneficial consequences to patients. Although current anti -angiogenic and vascular targeting strategies help patients, more potently in combination with chemo therapy, there is still a need for more tumour endothelial marker discoveries as current treatments have cardiovascular and other side effects. For the first time, the analyses of in-vivo biotinylation of an embryonic system is performed to obtain putative vascular targets. Also for the first time, deep sequencing is applied to freshly isolated tumour and normal endothelial cells from lung, colon and bladder tissues for the identification of pan-vascular-targets. Integration of the proteomic, deep sequencing, public cDNA libraries and microarrays, delivers 5,892 putative vascular targets to the science community. -
High Resolution Genomic Scans Reveal Genetic Architecture Controlling Alcohol Preference in Bidirectionally Selected Rat Model
Purdue University Purdue e-Pubs Department of Animal Sciences Faculty Department of Animal Sciences Publications 2016 High Resolution Genomic Scans Reveal Genetic Architecture Controlling Alcohol Preference in Bidirectionally Selected Rat Model Chiao-Ling Lo Indiana University School of Medicine Amy C. Lossie Indiana University School of Medicine Tiebing Liang Indiana University School of Medicine Yunlong Liu Indiana University School of Medicine Xiaoling Xuei Indiana University School of Medicine See next page for additional authors Follow this and additional works at: http://docs.lib.purdue.edu/anscpubs Recommended Citation Lo C-L, Lossie AC, Liang T, Liu Y, Xuei X, Lumeng L, et al. (2016) High Resolution Genomic Scans Reveal Genetic Architecture Controlling Alcohol Preference in Bidirectionally Selected Rat Model. PLoS Genet 12(8): e1006178. https://doi.org/10.1371/ journal.pgen.1006178 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. Authors Chiao-Ling Lo, Amy C. Lossie, Tiebing Liang, Yunlong Liu, Xiaoling Xuei, Lawrence Lumeng, Feng C. Zhou, and William M. Muir This article is available at Purdue e-Pubs: http://docs.lib.purdue.edu/anscpubs/19 RESEARCH ARTICLE High Resolution Genomic Scans Reveal Genetic Architecture Controlling Alcohol Preference in Bidirectionally Selected Rat Model Chiao-Ling Lo1,2, Amy C. Lossie1,3¤, Tiebing Liang1,4, Yunlong Liu1,5, Xiaoling Xuei1,6, Lawrence Lumeng1,4, Feng C. Zhou1,2,7*, William -
Absence of S100A4 in the Mouse Lens Induces an Aberrant Retina-Specific Differentiation Program and Cataract
www.nature.com/scientificreports OPEN Absence of S100A4 in the mouse lens induces an aberrant retina‑specifc diferentiation program and cataract Rupalatha Maddala1*, Junyuan Gao2, Richard T. Mathias2, Tylor R. Lewis1, Vadim Y. Arshavsky1,3, Adriana Levine4, Jonathan M. Backer4,5, Anne R. Bresnick4 & Ponugoti V. Rao1,3* S100A4, a member of the S100 family of multifunctional calcium‑binding proteins, participates in several physiological and pathological processes. In this study, we demonstrate that S100A4 expression is robustly induced in diferentiating fber cells of the ocular lens and that S100A4 (−/−) knockout mice develop late‑onset cortical cataracts. Transcriptome profling of lenses from S100A4 (−/−) mice revealed a robust increase in the expression of multiple photoreceptor‑ and Müller glia‑specifc genes, as well as the olfactory sensory neuron‑specifc gene, S100A5. This aberrant transcriptional profle is characterized by corresponding increases in the levels of proteins encoded by the aberrantly upregulated genes. Ingenuity pathway network and curated pathway analyses of diferentially expressed genes in S100A4 (−/−) lenses identifed Crx and Nrl transcription factors as the most signifcant upstream regulators, and revealed that many of the upregulated genes possess promoters containing a high‑density of CpG islands bearing trimethylation marks at histone H3K27 and/or H3K4, respectively. In support of this fnding, we further documented that S100A4 (−/−) knockout lenses have altered levels of trimethylated H3K27 and H3K4. Taken together, -
In-House Production Method for DNA Ladders to Determine Nucleotide Fragment Sizes up to 1500 Base Pairs
International Journal of New Technology and Research (IJNTR) ISSN:2454-4116, Volume-3, Issue-11, November 2017 Pages 66-70 In-house Production Method for DNA Ladders to Determine Nucleotide Fragment Sizes up to 1500 Base Pairs Tengis A1*, Duuriimaa.O2*, Badamsuren B2, Batchimeg N3, Ulziijargal G3, Tsendmaa TS1, Javkhlan B1, Baigalmaa B1, Bilegtsaikhan TS1, Munkhtulga L1, Nyambayar D1, Munkhbat B1 Baatartsogt O2 and Purevjargal N1 generated by cleavage of the native DNA with restriction Abstract — the human genome project was recently enzymes in the laboratory. Commercially, a broad range of completed after running for 15 years and revealed the presence DNA ladders from numerous suppliers are available in the of 30,000 genes in the human genome with a total nucleotide market with relatively high prices. This study aimed to length of 3.2 billion base pairs (bp). Many novel methods and produce a DNA ladder in house at a cheaper price. techniques have been developed in the field of molecular biology Here, we describe a method to produce a 100 bp DNA and molecular genetics as a result of intensive research, where size marker, which minimizes the experimental basic analysis is impossible without the use of DNA size markers or DNA ladders. This research aimed to establish an in-house disadvantages mentioned above. Based on our protocol, any method to produce DNA size markers detecting up to 1500 bp laboratory can prepare its own 100 bp DNA size marker. size. DNA size markers are commonly used consumables in molecular biology laboratories. In this study, we report II. MATERIALS AND METHODS preparation of a DNA size marker consisting of 12 fragments The cloning vector pDyne TA V2, Dyne Agarose STAR, from 100 to 1500 bp. -
RUNNING HEAD: Low Homozygosity in Spanish Sheep
1 RUNNING HEAD: Low homozygosity in Spanish sheep 2 3 Low genome-wide homozygosity in eleven Spanish ovine breeds 4 5 M.G. Luigi 1, T.F. Cardoso 1, 2 , A. Martínez 3, A. Pons 4, L.A. Bermejo 5, J. Jordana 6, J.V. 6 Delgado 3, S. Adán 7, E. Ugarte 8, J. J. Arranz 9, J. Casellas 6 and M. Amills 1, 6 * 7 8 1Department of Animal Genetics, Centre for Research in Agricultural Genomics 9 (CRAG), CSIC-IRTA-UAB-UB, Campus Universitat Autònoma de Barcelona, 10 Bellaterra 08193, Spain; 2CAPES Foundation, Ministry of Education of Brazil, Brasilia 11 D. F., 70.040-020, Brazil; 3Departamento de Genética, Universidad de Córdoba, 12 Córdoba 14071, Spain; 4Unitat de Races Autòctones, Servei de Millora Agrària i 13 Pesquera (SEMILLA), Son Ferriol 07198, Spain; 5Departamento de Ingeniería, 14 Producción y Economía Agrarias, Universidad de La Laguna, 38071 La Laguna, 15 Tenerife, Spain; 6Departament de Ciència Animal i dels Aliments, Facultat de 16 Veterinària, Universitat Autònoma de Barcelona, Bellaterra 08193, Spain; 7Federación 17 de Razas Autóctonas de Galicia (BOAGA), Pazo de Fontefiz, 32152 Coles. Ourense, 18 Spain; 8Neiker-Tecnalia, Campus Agroalimentario de Arkaute, apdo 46 E-01080 19 Vitoria-Gazteiz (Araba), Spain; 9Departamento de Producción Animal, Universidad de 20 León, León 24071, Spain. 21 22 Corresponding author: Marcel Amills. Department of Animal Genetics, Centre for 23 Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus 24 Universitat Autònoma de Barcelona, Bellaterra 08193, Spain. Tel. 34 93 5636600. E- 25 mail: [email protected]. 26 Abstract 27 28 The population of Spanish sheep has decreased from 24 to 15 million heads in 29 the last 75 years due to multiple social and economic factors. -
GRIPAP1 / GRASP1 Antibody (N-Terminus) Goat Polyclonal Antibody Catalog # ALS14943
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 GRIPAP1 / GRASP1 Antibody (N-Terminus) Goat Polyclonal Antibody Catalog # ALS14943 Specification GRIPAP1 / GRASP1 Antibody (N-Terminus) - Product Information Application IHC Primary Accession Q4V328 Reactivity Human Host Goat Clonality Polyclonal Calculated MW 96kDa KDa GRIPAP1 / GRASP1 Antibody (N-Terminus) - Additional Information Gene ID 56850 Anti-GRIPAP1 / GRASP1 antibody IHC of Other Names human brain, cortex. GRIP1-associated protein 1, GRASP-1, GRIPAP1, KIAA1167 Target/Specificity Human GRIPAP1 / GRASP1. This antibody is expected to recognize both reported isoforms (as represented by NP_064522.3; NP_997555.1) Reconstitution & Storage Store at -20°C. Minimize freezing and thawing. Precautions GRIPAP1 / GRASP1 Antibody (N-Terminus) is for research use only and not for use in Anti-GRIPAP1 / GRASP1 antibody IHC of diagnostic or therapeutic procedures. human tonsil. GRIPAP1 / GRASP1 Antibody (N-Terminus) GRIPAP1 / GRASP1 Antibody (N-Terminus) - Protein Information - References Bechtel S.,et al.BMC Genomics Name GRIPAP1 (HGNC:18706) 8:399-399(2007). Ross M.T.,et al.Nature 434:325-337(2005). Synonyms KIAA1167 Hirosawa M.,et al.DNA Res. 6:329-336(1999). Function Lubec G.,et al.Submitted (DEC-2008) to Regulates the endosomal recycling back to UniProtKB. the neuronal plasma membrane, possibly Holt L.J.,et al.Nucleic Acids Res. by connecting early and late recycling 28:72-72(2000). endosomal domains and promoting Page 1/2 10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 segregation of recycling endosomes from early endosomal membranes. -
Exploring the Relationship Between Gut Microbiota and Major Depressive Disorders
E3S Web of Conferences 271, 03055 (2021) https://doi.org/10.1051/e3sconf/202127103055 ICEPE 2021 Exploring the Relationship between Gut Microbiota and Major Depressive Disorders Catherine Tian1 1Shanghai American School, Shanghai, China Abstract. Major Depressive Disorder (MDD) is a psychiatric disorder accompanied with a high rate of suicide, morbidity and mortality. With the symptom of an increasing or decreasing appetite, there is a possibility that MDD may have certain connections with gut microbiota, the colonies of microbes which reside in the human digestive system. In recent years, more and more studies started to demonstrate the links between MDD and gut microbiota from animal disease models and human metabolism studies. However, this relationship is still largely understudied, but it is very innovative since functional dissection of this relationship would furnish a new train of thought for more effective treatment of MDD. In this study, by using multiple genetic analytic tools including Allen Brain Atlas, genetic function analytical tools, and MicrobiomeAnalyst, I explored the genes that shows both expression in the brain and the digestive system to affirm that there is a connection between gut microbiota and the MDD. My approach finally identified 7 MDD genes likely to be associated with gut microbiota, implicating 3 molecular pathways: (1) Wnt Signaling, (2) citric acid cycle in the aerobic respiration, and (3) extracellular exosome signaling. These findings may shed light on new directions to understand the mechanism of MDD, potentially facilitating the development of probiotics for better psychiatric disorder treatment. 1 Introduction 1.1 Major Depressive Disorder Major Depressive Disorder (MDD) is a mood disorder that will affect the mood, behavior and other physical parts. -
GRIP1 Gene Glutamate Receptor Interacting Protein 1
GRIP1 gene glutamate receptor interacting protein 1 Normal Function The GRIP1 gene provides instructions for making a protein that is able to attach (bind) to other proteins and is important for moving (targeting) proteins to the correct location in cells. For example, the GRIP1 protein targets two proteins called FRAS1 and FREM2 to the correct region of the cell so that they can form a group of proteins known as the FRAS/FREM complex. This complex is found in the thin, sheet-like structures ( basement membranes) that separate and support the cells of many tissues. The complex is particularly important during development before birth. One of its roles is to anchor the top layer of skin by connecting the basement membrane of the top layer to the layer of skin below. The FRAS/FREM complex is also involved in the proper development of certain other organs and tissues, including the kidneys, although the mechanism is unclear. In addition, the GRIP1 protein targets necessary proteins to the junctions (synapses) between nerve cells (neurons) in the brain where cell-to-cell communication occurs. GRIP1 may also be involved in the development of neurons. Health Conditions Related to Genetic Changes Fraser syndrome At least two GRIP1 gene mutations have been found to cause Fraser syndrome; these mutations are involved in a small percentage of cases of this condition. Fraser syndrome affects development before birth and is characterized by eyes that are completely covered by skin (cryptophthalmos), fusion of the skin between the fingers and toes (cutaneous syndactyly), and abnormalities of the kidneys and other organs and tissues. -
Thelhx2transcription Factor Controls Thalamocortical Axonal
4372 • The Journal of Neuroscience, March 28, 2012 • 32(13):4372–4385 Development/Plasticity/Repair The Lhx2 Transcription Factor Controls Thalamocortical Axonal Guidance by Specific Regulation of Robo1 and Robo2 Receptors Paula Marcos-Monde´jar,1 Sandra Peregrín,1 James Y. Li,2 Leif Carlsson,3 Shubha Tole,4 and Guillermina Lo´pez-Bendito1 1Instituto de Neurociencias de Alicante, Consejo Superior de Investigaciones Científicas and Universidad Miguel Herna´ndez, 03550 Sant Joan d’Alacant, Spain, 2Department of Genetics and Developmental Biology, University of Connecticut Health Center, 263 Farmington Avenue, Farmington, Connecticut 06030-6403, 3Umeå Center for Molecular Medicine, Umeå University, 901 87 Umeå, Sweden, and 4Department of Biological Sciences, Tata Institute of Fundamental Research, Colaba, Mumbai 400 005, India The assembly of neural circuits is dependent upon the generation of specific neuronal subtypes, each subtype displaying unique prop- erties that direct the formation of selective connections with appropriate target cells. Actions of transcription factors in neural progen- itors and postmitotic cells are key regulators in this process. LIM-homeodomain transcription factors control crucial aspects of neuronal differentiation, including subtype identity and axon guidance. Nonetheless, their regulation during development is poorly understood and the identity of the downstream molecular effectors of their activity remains largely unknown. Here, we demonstrate that the Lhx2 transcription factor is dynamically regulated in distinct pools of thalamic neurons during the development of thalamocortical connec- tivity in mice. Indeed, overexpression of Lhx2 provokes defective thalamocortical axon guidance in vivo, while specific conditional deletion of Lhx2 in the thalamus produces topographic defects that alter projections from the medial geniculate nucleus and from the caudal ventrobasal nucleus in particular. -
CITED2 Functions As a Molecular Switch of Cytokine-Induced Proliferation and Quiescence
Cell Death and Differentiation (2012) 19, 2015–2028 & 2012 Macmillan Publishers Limited All rights reserved 1350-9047/12 www.nature.com/cdd CITED2 functions as a molecular switch of cytokine-induced proliferation and quiescence Y-T Chou1,10, C-H Hsieh2,10, S-H Chiou3,4,10, C-F Hsu1, Y-R Kao1, C-C Lee1, C-H Chung1, Y-H Wang5, H-S Hsu4,6, S-T Pang7, Y-S Shieh8 and C-W Wu*,1,2,4,9 Transforming growth factor-a (TGF-a)-induced proliferation and transforming growth factor-b (TGF-b)-mediated quiescence are intricately balanced in normal lung-tissue homeostasis but are deregulated during neoplastic progression of lung cancer. Here, we show that Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 2 (CITED2), a novel MYC- interacting transcriptional modulator, responds to TGF-a induction and TGF-b suppression to orchestrate cellular proliferation and quiescence, respectively. Upon TGF-a induction, CITED2 was induced by MYC and further modulated MYC-mediated transcription in a feed-forward manner. CITED2 recruited p300 to promote MYC-p300-mediated transactivation of E2F3, leading to increased G1/S cell cycle progression. Moreover, CITED2 inhibited cellular quiescence by enhancing MYC-mediated suppression of p21CIP1. CITED2 interacted with histone deacetylase 1 (HDAC1) and potentiated MYC–HDAC1 complex formation. TGF-b stimulation provoked downregulation of CITED2, which abrogated MYC-HDAC1-mediated p21CIP1 suppression, causing cellular quiescence. Ectopic CITED2 expression enhanced tumor growth in nude mice; furthermore, CITED2 knockdown caused tumor shrinkage and increased overall host mouse survival rates. Expression of CITED2/MYC/E2F3/ p21CIP1 signaling molecules was associated with poor prognosis of lung cancer patients. -
Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth
ORIGINAL www.jpeds.com • THE JOURNAL OF PEDIATRICS ARTICLES Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth Joan Kaufman, PhD1,2,3, Janitza L. Montalvo-Ortiz, PhD3, Hannah Holbrook,BA4, Kerry O'Loughlin,BA4, Catherine Orr, PhD4, Catherine Kearney,MA1, Bao-Zhu Yang, PhD3, Tao Wang, PhD5,6, Hongyu Zhao, PhD5, Robert Althoff, MD, PhD4, Hugh Garavan, PhD4, Joel Gelernter,MD3,7, and James Hudziak,MD4 Objective To determine if measures of adverse childhood experiences and DNA methylation relate to indices of obesity in youth. Study design Participants were derived from a cohort of 321 8 to 15-year-old children recruited for an investi- gation examining risk and resilience and psychiatric outcomes in maltreated children. Assessments of obesity were collected as an add-on for a subset of 234 participants (56% female; 52% maltreated). Illumina arrays were used to examine whole genome epigenetic predictors of obesity in saliva DNA. For analytic purposes, the cohort ana- lyzed in the first batch comprised the discovery sample (n = 160), and the cohort analyzed in the second batch the replication sample (n = 74). Results After controlling for race, sex, age, cell heterogeneity, 3 principal components, and whole genome testing, 10 methylation sites were found to interact with adverse childhood experiences to predict cross-sectional mea- sures of body mass index, and an additional 6 sites were found to exert a main effect in predicting body mass index (P < 5.0 × 10−7, all comparisons). Eight of the methylation sites were in genes previously associated with obesity risk (eg, PCK2, CxCl10, BCAT1, HID1, PRDM16, MADD, PXDN, GALE), with several of the findings from the dis- covery data set replicated in the second cohort.