Luciano et al. Journal of Biomedical Semantics 2011, 2(Suppl 2):S1 http://www.jbiomedsem.com/content/2/S2/S1 JOURNAL OF BIOMEDICAL SEMANTICS PROCEEDINGS Open Access The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside Joanne S Luciano1,2*, Bosse Andersson3, Colin Batchelor4, Olivier Bodenreider5, Tim Clark6,7, Christine K Denney8, Christopher Domarew9, Thomas Gambet10, Lee Harland11, Anja Jentzsch12, Vipul Kashyap13, Peter Kos6, Julia Kozlovsky14, Timothy Lebo1, Scott M Marshall15,16, James P McCusker1, Deborah L McGuinness1, Chimezie Ogbuji17, Elgar Pichler18, Robert L Powers2, Eric Prud’hommeaux10, Matthias Samwald19,20,21, Lynn Schriml22, Peter J Tonellato6, Patricia L Whetzel23, Jun Zhao24, Susie Stephens25, Michel Dumontier26* From Bio-Ontologies 2010: Semantic Applications in Life Sciences Boston, MA, USA. 9-10 July 2010 * Correspondence:
[email protected]. Abstract edu;
[email protected] 1 Rensselaer Polytechnic Institute, Background: Translational medicine requires the integration of knowledge using Troy, NY, USA 26Carleton University, Ottawa, heterogeneous data from health care to the life sciences. Here, we describe a Canada collaborative effort to produce a prototype Translational Medicine Knowledge Base (TMKB) capable of answering questions relating to clinical practice and pharmaceutical drug discovery. Results: We developed the Translational Medicine Ontology (TMO) as a unifying ontology to integrate chemical, genomic and proteomic data with disease, treatment, and electronic health records. We demonstrate the use of Semantic Web technologies in the integration of patient and biomedical data, and reveal how such a knowledge base can aid physicians in providing tailored patient care and facilitate the recruitment of patients into active clinical trials.