Dynamics of an Experimental Microbial Invasion
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Harmful Algae 91 (2020) 101587
Harmful Algae 91 (2020) 101587 Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review Progress and promise of omics for predicting the impacts of climate change T on harmful algal blooms Gwenn M.M. Hennona,c,*, Sonya T. Dyhrmana,b,* a Lamont-Doherty Earth Observatory, Columbia University, Palisades, NY, United States b Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States c College of Fisheries and Ocean Sciences University of Alaska Fairbanks Fairbanks, AK, United States ARTICLE INFO ABSTRACT Keywords: Climate change is predicted to increase the severity and prevalence of harmful algal blooms (HABs). In the past Genomics twenty years, omics techniques such as genomics, transcriptomics, proteomics and metabolomics have trans- Transcriptomics formed that data landscape of many fields including the study of HABs. Advances in technology have facilitated Proteomics the creation of many publicly available omics datasets that are complementary and shed new light on the Metabolomics mechanisms of HAB formation and toxin production. Genomics have been used to reveal differences in toxicity Climate change and nutritional requirements, while transcriptomics and proteomics have been used to explore HAB species Phytoplankton Harmful algae responses to environmental stressors, and metabolomics can reveal mechanisms of allelopathy and toxicity. In Cyanobacteria this review, we explore how omics data may be leveraged to improve predictions of how climate change will impact HAB dynamics. We also highlight important gaps in our knowledge of HAB prediction, which include swimming behaviors, microbial interactions and evolution that can be addressed by future studies with omics tools. Lastly, we discuss approaches to incorporate current omics datasets into predictive numerical models that may enhance HAB prediction in a changing world. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Within-Arctic Horizontal Gene Transfer As a Driver of Convergent Evolution in Distantly Related 1 Microalgae 2 Richard G. Do
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.31.454568; this version posted August 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related 2 microalgae 3 Richard G. Dorrell*+1,2, Alan Kuo3*, Zoltan Füssy4, Elisabeth Richardson5,6, Asaf Salamov3, Nikola 4 Zarevski,1,2,7 Nastasia J. Freyria8, Federico M. Ibarbalz1,2,9, Jerry Jenkins3,10, Juan Jose Pierella 5 Karlusich1,2, Andrei Stecca Steindorff3, Robyn E. Edgar8, Lori Handley10, Kathleen Lail3, Anna Lipzen3, 6 Vincent Lombard11, John McFarlane5, Charlotte Nef1,2, Anna M.G. Novák Vanclová1,2, Yi Peng3, Chris 7 Plott10, Marianne Potvin8, Fabio Rocha Jimenez Vieira1,2, Kerrie Barry3, Joel B. Dacks5, Colomban de 8 Vargas2,12, Bernard Henrissat11,13, Eric Pelletier2,14, Jeremy Schmutz3,10, Patrick Wincker2,14, Chris 9 Bowler1,2, Igor V. Grigoriev3,15, and Connie Lovejoy+8 10 11 1 Institut de Biologie de l'ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, 12 INSERM, Université PSL, 75005 Paris, France 13 2CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, 14 FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016 Paris, France 15 3 US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 16 Cyclotron Road, Berkeley, -
Effect of Different Salinities on Growth and Intra-And Extracellular Toxicity
Vol. 67: 139–149, 2012 AQUATIC MICROBIAL ECOLOGY Published online October 2 doi: 10.3354/ame01589 Aquat Microb Ecol Effect of different salinities on growth and intra- and extracellular toxicity of four strains of the haptophyte Prymnesium parvum Astrid Weissbach, Catherine Legrand* Centre for Ecology and Evolution in Microbial model Systems (EEMiS), School of Natural Sciences, Linnæus University, 39182 Kalmar, Sweden ABSTRACT: The present study investigates the effect of brackish (7 PSU) and marine (26 PSU) salinity on physiological parameters and intra- and extracellular toxicity in 4 strains of Prymne- sium parvum Carter. The different P. parvum strains were grown in batch cultures in 2 trials under different experimental conditions to test the development of intra- and extracellular toxicity dur- ing growth. The response of P. parvum toxicity to salinity was validated using 2 protocols. Intra- specific variations in growth rate, maximal cell density (yield) and cell morphology were con- trolled by salinity. Extracellular toxicity was higher at 7 PSU in all strains, but no correlation was found between intra- and extracellular toxicity. The variation of extracellular toxicity in response to salinity was much greater than that of intracellular toxicity, which indicates that P. parvum may be producing a variety of substances contributing to its various types of ‘toxicity’. KEY WORDS: Allelopathy · Extracellular toxicity · Harmful algal species · Intracellular toxicity · Prymnesium parvum · Salinity · Strain Resale or republication not permitted without written consent of the publisher INTRODUCTION Igarashi et al. (1996). It is not yet clear if the toxins stored intracellularly, causing mortality of P. parvum Prymnesium parvum Carter, the so-called ‘golden grazers due to ingestion (mechanism 2) (Tillmann algae’, is a harmful and toxic microalga, which causes 2003, Barreiro et al. -
Short-Term Toxicity Effects of Prymnesium Parvum on Zooplankton Community Composition; Aquatic Sciences; Witt Et Al.; University of Oklahoma; [email protected]
Aquatic Sciences (2019) 81:55 https://doi.org/10.1007/s00027-019-0651-2 Aquatic Sciences RESEARCH ARTICLE Short‑term toxicity efects of Prymnesium parvum on zooplankton community composition Brenda A. Witt1,2 · Jessica E. Beyer1 · Thayer C. Hallidayschult1 · K. David Hambright1 Received: 13 November 2018 / Accepted: 29 June 2019 © Springer Nature Switzerland AG 2019 Abstract Harmful algal blooms (HABs) can disrupt aquatic communities through a variety of mechanisms, especially through toxin production. Herbivorous and omnivorous zooplankton may be particularly susceptible to HAB toxins, due to their close trophic relationship to algae as grazers. In this study, the acute toxigenic efects of the haptophyte Prymnesium parvum on a zooplankton community were investigated under laboratory conditions. Total zooplankton abundances decreased during 48-h exposure, although species responses to P. parvum densities varied. Changes in community composition were driven by declines in Daphnia mendotae and Keratella spp. abundances, which resulted in an average shift in copepod abundance from 47.1 to 72.4%, and rotifer abundance from 35.0 to 7.1%. Total cladocerans were relatively unchanged in relative abundance (11.1–10.4%), though the dominant cladoceran shifted from Daphnia mendotae (61.3% of cladocerans) to Bosmina longiro- stris (81.5% of cladocerans). Daphnia mendotae and Keratella spp. are known to be non-selective or generalist feeders and were likely harmed through a combination of ingestion of and contact by P. parvum. Proportional increases in copepod and Bosmina abundances in the presence of P. parvum likely refect selective or discriminate feeding abilities in these taxa. This study corroborates previous feld studies showing that P. -
Literature Review of the Microalga Prymnesium Parvum and Its Associated Toxicity
Literature Review of the Microalga Prymnesium parvum and its Associated Toxicity Sean Watson, Texas Parks and Wildlife Department, August 2001 Introduction Recent large-scale fish kills associated with the golden-alga, Prymnesium parvum, have imposed monetary and ecological losses on the state of Texas. This phytoflagellate has been implicated in fish kills around the world since the 1930’s (Reichenbach-Klinke 1973). Kills due to P. parvum blooms are normally accompanied by water with a golden-yellow coloration that foams in riffles (Rhodes and Hubbs 1992). The factors responsible for the appearance of toxic P. parvum blooms have yet to be determined. The purpose of this paper is to present a review of the work by those around the globe whom have worked with Prymnesium parvum in an attempt to better understand the biology and ecology of this organism as well as its associated toxicity. I will concentrate on the relevant biology important in the ecology and identification of this organism, its occurrence, nutritional requirements, factors governing its toxicity, and methods used to control toxic blooms with which it is associated. Background Biology and Diagnostic Features Prymnesium parvum is a microalga in the class Prymnesiophyceae, order Prymnesiales and family Prymnesiaceae, and is a common member of the marine phytoplankton (Bold and Wynne 1985, Larsen 1999, Lee 1980). It is a uninucleate, unicellular flagellate with an ellipsoid or narrowly oval cell shape (Lee 1980, Prescott 1968). Green, Hibberd and Pienaar (1982) reported that the cells range from 8-11 micrometers long and 4-6 micrometers wide. The authors also noted that the cells are PWD RP T3200-1158 (8/01) 2 Lit. -
Phylogeny, Life History, Autecology and Toxicity of Prymnesium Parvum
Phylogeny, life history, autecology and toxicity of Prymnesium parvum Bente Edvardsen1,2 and Aud Larsen3 1 University of Oslo, Norway, 2 NIVA, Norway 3 University of Bergen, Norway Distribution of Prymnesium parvum record bloom s s Overview • morphology - what it looks like • phylogeny - how is P. parvum related to other organisms • life cycle – with alternating cell types • physiology - nutrition and toxicity • autecology - growth as a function of environmental factors • occurrence of P. parvum - interpreting environmental conditions that cause blooms • how can we reduce the risk for harmful blooms? Division: Haptophyta Class: Prymnesiophyceae Species: Prymnesium parvum forms: f. parvum and f. patelliferum Morphology of P. parvum haptonema flagella chloroplast Ill.: Jahn Throndsen Photos: Wenche Eikrem scales A Light micrograph of cell B Electron micrograph of scales Organic scales covering the cells - character for species identification inside outside (Larsen 1998) Prymnesium species Species Habitat Distribution Toxic P. parvum brackish worldwide, temperate yes zone P. annuliferum marine France (Med. Sea) unknown P. calathiferum marine New Zealand yes P. faveolatum marine France, Spain yes P. nemamethecum marine S Africa, Australia unknown P. zebrinum marine France (Med. Sea) unknown P. czosnowskii, P. gladiociliatum, P. minutum, P.papillarum and P. saltans have uncertain status Haptophyte phylogeny 100/100 Pavlova aff. salina 87/57 Pavlova gyrans Pavlova CCMP1416 99/100 Pavlova CCMP 1394 Phaeocystis sp. 1 100/100 OLI51004 99/ Phaeocystis -
The Niche of an Invasive Marine Microbe in a Subtropical Freshwater Impoundment
The ISME Journal (2015) 9, 256–264 & 2015 International Society for Microbial Ecology All rights reserved 1751-7362/15 www.nature.com/ismej ORIGINAL ARTICLE The niche of an invasive marine microbe in a subtropical freshwater impoundment K David Hambright1,2,3, Jessica E Beyer1,2, James D Easton1,3, Richard M Zamor1,2, Anne C Easton1,3 and Thayer C Hallidayschult1,2 1Plankton Ecology and Limnology Laboratory, Department of Biology, University of Oklahoma, Norman, OK, USA; 2Program in Ecology and Evolutionary Biology, Department of Biology, University of Oklahoma, Norman, OK, USA and 3Biological Station, Department of Biology, University of Oklahoma, Norman, OK, USA Growing attention in aquatic ecology is focusing on biogeographic patterns in microorganisms and whether these potential patterns can be explained within the framework of general ecology. The long-standing microbiologist’s credo ‘Everything is everywhere, but, the environment selects’ suggests that dispersal is not limiting for microbes, but that the environment is the primary determining factor in microbial community composition. Advances in molecular techniques have provided new evidence that biogeographic patterns exist in microbes and that dispersal limitation may actually have an important role, yet more recent study using extremely deep sequencing predicts that indeed everything is everywhere. Using a long-term field study of the ‘invasive’ marine haptophyte Prymnesium parvum, we characterize the environmental niche of P. parvum in a subtropical impoundment in the southern United States. Our analysis contributes to a growing body of evidence that indicates a primary role for environmental conditions, but not dispersal, in the lake- wide abundances and seasonal bloom patterns in this globally important microbe. -
Integrative Taxonomy of the Pavlovophyceae (Haptophyta): a Reassessment
Protist, Vol. 162, 738–761, November 2011 http://www.elsevier.de/protis Published online date 28 June 2011 ORIGINAL PAPER Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A Reassessment El Mahdi Bendifa,b,1, Ian Proberta,2, Annie Hervéc, Chantal Billardb, Didier Gouxd, Christophe Lelongb, Jean-Paul Cadoretc, and Benoît Vérona,b,3 aUniversité de Caen Basse-Normandie, Algobank-Caen, IFR 146, 14032 Caen, France bUniversité de Caen Basse-Normandie, UMR 100 PE2 M - IFREMER, 14032 Caen, France cIFREMER, Laboratoire de Physiologie et Biotechnologie des Algues, rue de l’Ile d’Yeu, BP21105, 44311 Nantes, France dUniversité de Caen Basse-Normandie, Centre de Microscopie Appliquée à la Biologie, IFR 146, 14032 Caen, France Submitted October 18, 2010; Accepted March 15, 2011 Monitoring Editor: Barry S. C. Leadbeater. The Pavlovophyceae (Haptophyta) contains four genera (Pavlova, Diacronema, Exanthemachrysis and Rebecca) and only thirteen characterised species, several of which are important in ecological and eco- nomic contexts. We have constructed molecular phylogenies inferred from sequencing of ribosomal gene markers with comprehensive coverage of the described diversity, using type strains when avail- able, together with additional cultured strains. The morphology and ultrastructure of 12 of the described species was also re-examined and the pigment signatures of many culture strains were determined. The molecular analysis revealed that sequences of all described species differed, although those of Pavlova gyrans and P. pinguis were nearly identical, these potentially forming a single cryptic species complex. Four well-delineated genetic clades were identified, one of which included species of both Pavlova and Diacronema. Unique combinations of morphological/ultrastructural characters were iden- tified for each of these clades. -
Phylogenomics Invokes the Clade Housing Cryptista, Archaeplastida, and Microheliella Maris
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.29.458128; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomics invokes the clade housing Cryptista, 2 Archaeplastida, and Microheliella maris. 3 4 Euki Yazaki1, †, *, Akinori Yabuki2, †, *, Ayaka Imaizumi3, Keitaro Kume4, Tetsuo Hashimoto5,6, 5 and Yuji Inagaki6,7 6 7 1: RIKEN iTHEMS, Wako, Saitama 351-0198, Japan 8 2: Japan Agency for Marine-Earth Science and Technology, Yokosuka, Kanagawa 236-0001, 9 Japan 10 3: College of Biological Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan. 11 4: Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, 305-8575, Japan 12 5: Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305- 13 8572, Japan 14 6: Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, 15 Ibaraki, 305-8572, Japan 16 7: Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, 17 Japan 18 19 †EY and AY equally contributed to this work. 20 *Correspondence addressed to Euki Yazaki: [email protected] and Akinori Yabuki: 21 [email protected] 22 23 Running title: The clade housing Cryptista, Archaeplastida, and Microheliella maris. 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.08.29.458128; this version posted August 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Copyright by Aimee Elizabeth Talarski 2014
Copyright by Aimee Elizabeth Talarski 2014 The Dissertation Committee for Aimee Elizabeth Talarski certifies that this is the approved version of the following dissertation: Genetic basis for ichthyotoxicity and osmoregulation in the euryhaline haptophyte, Prymnesium parvum N. Carter Committee: ____________________________________ John W. La Claire, II, Supervisor ____________________________________ Deana Erdner ____________________________________ Stanley Roux ____________________________________ David Herrin ____________________________________ Robert Jansen Genetic basis for ichthyotoxicity and osmoregulation in the euryhaline haptophyte, Prymnesium parvum N. Carter by Aimee Elizabeth Talarski, B.S.; M.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin May 2014 Dedication This dissertation is dedicated in loving memory of my son, Bobby Talarski Hamza. Acknowledgements I would like to express my heartfelt gratitude to my advisor, Dr. John W. La Claire, II, for giving me the opportunity to work in his laboratory, encouraging me to further my education, and motivating me to become a better scientist. I cannot thank Dr. Schonna Manning enough, who has not only become a good friend over the years but has contributed a lot to the quality of my graduate education at the University of Texas. She is an amazing, patient, and innovative scientist who constantly inspires me. Additionally, I would like to express appreciation to my committee (Dr. Deana Erdner, Dr. Stan Roux, Dr. Bob Jansen, and Dr. David Herrin) for their time, support, and valuable advice. Further thanks is extended to my family for their love and support and believing in me all of these years, particularly my mother, who instilled the importance of education within me from an early age; my cherished friend Dr. -
Prymnesium Parvum (Haptophyceae) and Its Toxins Using Clay Minerals Mario R
Harmful Algae 4 (2005) 261–274 Removal of Prymnesium parvum (Haptophyceae) and its toxins using clay minerals Mario R. Sengco a,∗, Johannes A. Hagström b, Edna Granéli b, Donald M. Anderson a a Biology Department, MS 32, Woods Hole Oceanographic Institution, Woods Hole, MA 02543 USA b Department of Biology and Environmental Science, University of Kalmar, Barlastgatan 1, 391 82 Kalmar, Sweden Received 19 March 2004; received in revised form 30 April 2004; accepted 8 May 2004 Abstract Laboratory experiments were conducted to examine the ability of several clay minerals from Sweden to remove the fish-killing microalga, Prymnesium parvum Carter, from suspension. In their commercial form (i.e. after incineration at 400 ◦C), seawater slurries (salinity = 26) of the three minerals tested were generally ineffective at removing P. parvum from culture within a range of 0.01 to 0.50 g/L, and after 2.5 h of flocculation and settling. Dry bentonite (SWE1) displayed the highest removal efficiency (RE) at 17.5%, with 0.50 g/L. Illite (SWE3) averaged only 7.5% RE between 0.10 to 0.50 g/L, while kaolinite (SWE2) kept the cells suspended instead of removing them. Brief mixing of the clay-cell suspension after SWE1 addition improved RE by a factor of 2.5 (i.e. 49% at 0.50 g/L), relative to no mixing. The addition of polyaluminum chloride (PAC, at 5 ppm) to 0.50 g/L SWE1 also improved RE to 50% relative to SWE1 alone, but only minor improvements in RE were seen with SWE2 and SWE2 combined with PAC.