Germ Layer Specification and Axial Patterning in the Embryonic Development of the Freshwater Planarian Schmidtea Polychroa
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Research Collection Doctoral Thesis Ecological and evolutionary dynamics in natural populations of co-existing sexual and asexual lineages Author(s): Paczesniak, Dorota Olga Publication Date: 2012 Permanent Link: https://doi.org/10.3929/ethz-a-009795048 Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library DISS. ETH NO. 20790 ECOLOGICAL AND EVOLUTIONARY DYNAMICS IN NATURAL POPULATIONS OF CO‐EXISTING SEXUAL AND ASEXUAL LINEAGES A dissertation submitted to ETH ZURICH for the degree of Doctor of Sciences presented by DOROTA OLGA PACZESNIAK MSc in Biology, Jagiellonian University, Krakow, Poland born 28.08.1982 citizen of Poland accepted on the recommendation of Prof. Dr. Jukka Jokela Prof. Dr. Maurine Neiman Prof. Dr. Janis Antonovics 2012 ECOLOGICAL AND EVOLUTIONARY DYNAMICS IN NATURAL POPULATIONS OF CO-EXISTING SEXUAL AND ASEXUALL LINEAGES DOROTA PACZESNIAK cover illustration by Sibylle Lauper Diss. ETH No. 20790 Table of Contents Summary 5 Zussamenfassung 7 Introduction 11 Chapter I: Wide variation in ploidy level and genome size in a New Zealand freshwater snail with coexisting sexual and asexual lineages 19 Chapter II: Phylogeographic discordance between nuclear and mitochondrial genomes in asexual lineages of the freshwater snail Potamopyrgus antipodarum 47 Chapter III: Temporal dynamics of clonal structure are greater in habitats where risk of infection is high as predicted by the parasite hypothesis for sex 77 Chapter IV: Fitness distribution of asexual lineages in a natural population of coexisting sexuals and asexuals 111 Concluding remarks 135 Acknowledgments 139 Summary Theory predicts that asexually reproducing organisms should have a two-fold reproductive advantage over their sexual counterparts, which invest half of their reproductive potential into male offspring. -
Sexual Selection and Sexual Size Dimorphism in Animals
Supplementary Information Sexual selection and sexual size dimorphism in animals Tim Janicke & Salomé Fromonteil Contents Figure S1 – S3. (pp. 2 – 4) Table S1 – S2. (pp. 5 – 10) Supplementary Data: List of primary studies (pp. 11 – 15) 1 Records identified Additional records from other sources through database searching N = 589 N = 2,907 - downward search (N = 496) - data from Janicke et al. 2016 (N = 92) - unpublished work (N = 1) Identification Records identified Duplicates excluded N = 3,496 N = 136 Records Articles excluded based on title screened and/or abstract indicating that study does not provide relevant data N = 3,360 Screening N = 3,172 Full-text articles Full-text articles excluded assessed for eligibility N = 115 N = 186 - no empirical data (N = 7) Eligibility - no Bateman data (N = 52) - only one sex reported (N = 54) - no data for sexual size dimorphism (N = 2) Primary studies included in analysis Analysis N = 71 Figure S1. Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) Diagram. Flow chart shows the number of records identified during the different phases of the systematic literature search. 2 Macrostomum lignano Schmidtea polychroa Biomphalaria glabrata Lymnaea stagnalis Physa acuta Latrodectus hasseltii Pycnogonum stearnsi Paracerceis sculpta Gryllus campestris Gerris buenoi Gerris gillettei Drosophila melanogaster Drosophila bifurca Drosophila lummei Drosophila virilis Onthophagus taurus Megabruchidius dorsalis Megabruchidius tonkineus Acanthoscelides obtectus Callosobruchus chinensis Callosobruchus -
Freshwater Planarians (Platyhelminthes, Tricladida) from the Iberian Peninsula and Greece: Diversity and Notes on Ecology
Zootaxa 2779: 1–38 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Freshwater planarians (Platyhelminthes, Tricladida) from the Iberian Peninsula and Greece: diversity and notes on ecology MIQUEL VILA-FARRÉ1,5, RONALD SLUYS2, ÍO ALMAGRO3, METTE HANDBERG-THORSAGER4 & RAFAEL ROMERO1 1Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain 2Institute for Biodiversity and Ecosystem Dynamics & Zoological Museum, University of Amsterdam, Ph. O. Box 94766, 1090 GT Amsterdam, The Netherlands 3Departamento de Biología Evolutiva y Biodiversidad. Museo Nacional de Ciencias Naturales, Madrid, Spain 4European Molecular Biology Laboratory, Developmental Biology Programme, Meyerhofstrasse 1, 69012 Heidelberg, Germany 5Corresponding author. E-mail: [email protected] Table of contents Abstract . 2 Introduction . 2 Material and methods . 4 Order Tricladida Lang, 1884 . 5 Suborder Continenticola Carranza, Littlewood, Clough, Ruiz-Trillo, Baguñà & Riutort, 1998 . 5 Family Dendrocoelidae Hallez, 1892 . 5 Genus Dendrocoelum Örsted, 1844 . 5 Dendrocoelum spatiosum Vila-Farré & Sluys, sp. nov. 5 Dendrocoelum inexspectatum Vila-Farré & Sluys, sp. nov. 10 Family Planariidae Stimpson, 1857 . 12 Genus Phagocata Leidy, 1847 . 12 Phagocata flamenca Vila-Farré & Sluys, sp. nov. 12 Phagocata asymmetrica Vila-Farré & Sluys, sp. nov. 15 Phagocata gallaeciae Vila-Farré & Sluys, sp. nov. 18 Phagocata pyrenaica Vila-Farré & Sluys, sp. nov. 20 Phagocata sp. 24 Phagocata hellenica Vila-Farré & Sluys, sp. nov. 24 Phagocata graeca Vila-Farré & Sluys, sp. nov. 27 Genus Polycelis Ehrenberg, 1831 . 30 Polycelis nigra (Müller, 1774) . 30 Family Dugesiidae Ball, 1974 . 30 Genus Girardia Ball, 1974 . 30 Girardia tigrina (Girard, 1850). 30 Genus Schmitdtea Ball, 1974. 31 Schmidtea polychroa (Schmidt, 1861) . -
Planarians As Invertebrate Bioindicators in Freshwater Environmental Quality: the Biomarkers Approach
Ecotoxicol. Environ. Contam., v. 9, n. 1, 2014, 01-12 doi: 10.5132/eec.2014.01.001 Planarians as invertebrate bioindicators in freshwater environmental quality: the biomarkers approach T. KNAKIEVICZ Universidade Estadual do Oeste do Paraná - UNIOESTE (Received March 08, 2013; Accept March 17, 2014) Abstract Environmental contamination has become an increasing global problem. Different scientific strategies have been developed in order to assess the impact of pollutants on aquatic ecosystems. Planarians are simple organisms with incredible regenerative capacity due to the presence of neoblastos, which are stem cells. They are easy test organisms and inexpensive to grow in the laboratory. These characteristics make planarians suitable model-organisms for studies in various fields, including ecotoxicology. This article presents an overview of biological responses measured in planarians. Nine biological responses measured in planarians were reviewed: 1) histo-cytopathological alterations in planarians; 2) Mobility or behavioral assay; 3) regeneration assay; 4) comet assay; 5) micronucleus assay; 6) chromosome aberration assay; 7) biomarkers in molecular level; 8) sexual reproduction assay; 9) asexual reproduction assay. This review also summarizes the results of ecotoxicological evaluations performed in planarians with metals in different parts of the world. All these measurement possibilities make Planarians good bioindicators. Due to this, planarians have been used to evaluate the toxic, cytotoxic, genotoxic, mutagenic, and teratogenic effects of metals, and also to evaluate the activity of anti-oxidant enzymes. Planarians are also considered excellent model organisms for the study of developmental biology and cell differentiation process of stem cells. Therefore, we conclude that these data contributes to the future establishment of standardized methods in tropical planarians with basis on internationally agreed protocols on biomarker-based monitoring programmes. -
Comparative Transcriptomic Analyses and Single-Cell RNA Sequencing Of
Swapna et al. Genome Biology (2018) 19:124 https://doi.org/10.1186/s13059-018-1498-x RESEARCH Open Access Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation Lakshmipuram Seshadri Swapna1, Alyssa M. Molinaro1,2, Nicole Lindsay-Mosher1,2, Bret J. Pearson1,2,3* and John Parkinson1,2,4* Abstract Background: In the Lophotrochozoa/Spiralia superphylum, few organisms have as high a capacity for rapid testing of gene function and single-cell transcriptomics as the freshwater planaria. The species Schmidtea mediterranea in particular has become a powerful model to use in studying adult stem cell biology and mechanisms of regeneration. Despite this, systematic attempts to define gene complements and their annotations are lacking, restricting comparative analyses that detail the conservation of biochemical pathways and identify lineage-specific innovations. Results: In this study we compare several transcriptomes and define a robust set of 35,232 transcripts. From this, we perform systematic functional annotations and undertake a genome-scale metabolic reconstruction for S. mediterranea. Cross-species comparisons of gene content identify conserved, lineage-specific, and expanded gene families, which may contribute to the regenerative properties of planarians. In particular, we find that the TRAF gene family has been greatly expanded in planarians. We further provide a single-cell RNA sequencing analysis of 2000 cells, revealing both known and novel cell types defined by unique signatures of gene expression. Among these are a novel mesenchymal cell population as well as a cell type involved in eye regeneration. Integration of our metabolic reconstruction further reveals the extent to which given cell types have adapted energy and nucleotide biosynthetic pathways to support their specialized roles. -
Phylum Platyhelminthes
Author's personal copy Chapter 10 Phylum Platyhelminthes Carolina Noreña Departamento Biodiversidad y Biología Evolutiva, Museo Nacional de Ciencias Naturales (CSIC), Madrid, Spain Cristina Damborenea and Francisco Brusa División Zoología Invertebrados, Museo de La Plata, La Plata, Argentina Chapter Outline Introduction 181 Digestive Tract 192 General Systematic 181 Oral (Mouth Opening) 192 Phylogenetic Relationships 184 Intestine 193 Distribution and Diversity 184 Pharynx 193 Geographical Distribution 184 Osmoregulatory and Excretory Systems 194 Species Diversity and Abundance 186 Reproductive System and Development 194 General Biology 186 Reproductive Organs and Gametes 194 Body Wall, Epidermis, and Sensory Structures 186 Reproductive Types 196 External Epithelial, Basal Membrane, and Cell Development 196 Connections 186 General Ecology and Behavior 197 Cilia 187 Habitat Selection 197 Other Epidermal Structures 188 Food Web Role in the Ecosystem 197 Musculature 188 Ectosymbiosis 198 Parenchyma 188 Physiological Constraints 199 Organization and Structure of the Parenchyma 188 Collecting, Culturing, and Specimen Preparation 199 Cell Types and Musculature of the Parenchyma 189 Collecting 199 Functions of the Parenchyma 190 Culturing 200 Regeneration 190 Specimen Preparation 200 Neural System 191 Acknowledgment 200 Central Nervous System 191 References 200 Sensory Elements 192 INTRODUCTION by a peripheral syncytium with cytoplasmic elongations. Monogenea are normally ectoparasitic on aquatic verte- General Systematic brates, such as fishes, -
Platyhelminthes, Tricladida)
Systematics and historical biogeography of the genus Dugesia (Platyhelminthes, Tricladida) Eduard Solà Vázquez ADVERTIMENT. La consulta d’aquesta tesi queda condicionada a l’acceptació de les següents condicions d'ús: La difusió d’aquesta tesi per mitjà del servei TDX (www.tdx.cat) i a través del Dipòsit Digital de la UB (diposit.ub.edu) ha estat autoritzada pels titulars dels drets de propietat intel·lectual únicament per a usos privats emmarcats en activitats d’investigació i docència. No s’autoritza la seva reproducció amb finalitats de lucre ni la seva difusió i posada a disposició des d’un lloc aliè al servei TDX ni al Dipòsit Digital de la UB. No s’autoritza la presentació del seu contingut en una finestra o marc aliè a TDX o al Dipòsit Digital de la UB (framing). Aquesta reserva de drets afecta tant al resum de presentació de la tesi com als seus continguts. En la utilització o cita de parts de la tesi és obligat indicar el nom de la persona autora. ADVERTENCIA. La consulta de esta tesis queda condicionada a la aceptación de las siguientes condiciones de uso: La difusión de esta tesis por medio del servicio TDR (www.tdx.cat) y a través del Repositorio Digital de la UB (diposit.ub.edu) ha sido autorizada por los titulares de los derechos de propiedad intelectual únicamente para usos privados enmarcados en actividades de investigación y docencia. No se autoriza su reproducción con finalidades de lucro ni su difusión y puesta a disposición desde un sitio ajeno al servicio TDR o al Repositorio Digital de la UB. -
Embryonic Origin of Adult Stem Cells Required for Tissue Homeostasis And
RESEARCH ARTICLE Embryonic origin of adult stem cells required for tissue homeostasis and regeneration Erin L Davies, Kai Lei, Christopher W Seidel, Amanda E Kroesen, Sean A McKinney, Longhua Guo, Sofia MC Robb, Eric J Ross, Kirsten Gotting, Alejandro Sa´ nchez Alvarado* Howard Hughes Medical Institute, Stowers Institute for Medical Research, Kansas City, United States Abstract Planarian neoblasts are pluripotent, adult somatic stem cells and lineage-primed progenitors that are required for the production and maintenance of all differentiated cell types, including the germline. Neoblasts, originally defined as undifferentiated cells residing in the adult parenchyma, are frequently compared to embryonic stem cells yet their developmental origin remains obscure. We investigated the provenance of neoblasts during Schmidtea mediterranea embryogenesis, and report that neoblasts arise from an anarchic, cycling piwi-1+ population wholly responsible for production of all temporary and definitive organs during embryogenesis. Early embryonic piwi-1+ cells are molecularly and functionally distinct from neoblasts: they express unique cohorts of early embryo enriched transcripts and behave differently than neoblasts in cell transplantation assays. Neoblast lineages arise as organogenesis begins and are required for construction of all major organ systems during embryogenesis. These subpopulations are continuously generated during adulthood, where they act as agents of tissue homeostasis and regeneration. DOI: 10.7554/eLife.21052.001 *For correspondence: asa@ stowers.org Introduction Competing interest: See Neoblasts are planarian adult somatic stem cells that exhibit levels of plasticity and pluripotency page 32 comparable to embryonic and induced pluripotent stem cells (Elliott and Sa´nchez Alvarado, 2013; Rink, 2013; Wagner et al., 2011). In flies, fish, mice and humans, adult somatic stem cells are fate- Funding: See page 32 restricted, sustaining production of cell lineage(s) in resident tissues (Fuchs and Segre, 2000; Received: 30 August 2016 Wagers and Weissman, 2004). -
Paternal Inheritance in Parthenogenetic Forms of the Planarian Schmidtea Polychroa
Heredity (2006) 97, 97–101 & 2006 Nature Publishing Group All rights reserved 0018-067X/06 $30.00 www.nature.com/hdy Paternal inheritance in parthenogenetic forms of the planarian Schmidtea polychroa TG D’Souza, RD Schulte, H Schulenburg and NK Michiels Animal Evolutionary Ecology, Zoological Institute, University of Tuebingen, Auf der Morgenstelle 28, Tuebingen D-72076, Germany Parthenogenesis usually includes clonal inheritance, which is paternal genetic material is usually excluded from the oocyte thought to increase the risk of the clonal populations’ (sperm-dependent parthenogenesis). Based on a compar- extinction. Yet many parthenogenetic organisms appear to ison of parents and offspring, using highly polymorphic have survived for extended periods. A possible explanation is microsatellites, we demonstrate the incorporation of paternal that parthenogens occasionally reproduce through sex-like alleles in about 5% of the offspring. We detected two processes. Although there is indirect evidence for occasional distinct processes: chromosome addition and chromosome sex, the underlying mechanisms are currently unknown. In displacement. Such rare sexual processes may explain the the present study, we examined sex-like processes in the long-term persistence of the many purely parthenogenetic planarian flatworm Schmidtea (Dugesia) polychroa. Parthe- populations of S. polychroa in northern Europe. nogenetic forms of this species are simultaneous hermaph- Heredity (2006) 97, 97–101. doi:10.1038/sj.hdy.6800841; rodites that require sperm to trigger embryogenesis, whereas published online 24 May 2006 Keywords: evolution of sex; recombination; microsatellites; parthenogenesis; occasional sex; polyploidy Introduction needed to trigger zygote division and embryo develop- ment. Because parthenogenetic S. polychroa are also Most types of parthenogenesis involve the production of hermaphroditic, they produce polyploid, parthenoge- clonal, genetically identical offspring as meiosis and netic eggs as well as haploid sperm (Benazzi Lentati, karyogamy are usually absent. -
The EGFR Signaling Pathway Controls Gut Progenitor Differentiation During Planarian Regeneration and Homeostasis Sara Barberán, Susanna Fraguas and Francesc Cebria*̀
© 2016. Published by The Company of Biologists Ltd | Development (2016) 143, 2089-2102 doi:10.1242/dev.131995 STEM CELLS AND REGENERATION RESEARCH ARTICLE The EGFR signaling pathway controls gut progenitor differentiation during planarian regeneration and homeostasis Sara Barberán, Susanna Fraguas and Francesc Cebria*̀ ABSTRACT dividing cells of planarians (Morita and Best, 1984; Newmark and The planarian Schmidtea mediterranea maintains and regenerates all Sánchez Alvarado, 2000) and thus can differentiate into any cell its adult tissues through the proliferation and differentiation of a single type. Accordingly, the neoblast population consists of a population of pluripotent adult stem cells (ASCs) called neoblasts. compartment of pluripotent ASCs (Wagner et al., 2011) and a Despite recent advances, the mechanisms regulating ASC heterogeneous pool of lineage-restricted progenitors (Hayashi et al., differentiation into mature cell types are poorly understood. Here, 2010; Moritz et al., 2012; Reddien, 2013; Scimone et al., 2014; van we show that silencing of the planarian EGF receptor egfr-1 by RNA Wolfswinkel et al., 2014), which can be distinguished by the interference (RNAi) impairs gut progenitor differentiation into mature expression of tissue-specific transcription factors (Adler et al., 2014; cells, compromising gut regeneration and maintenance. We identify a Cowles et al., 2013; Lapan and Reddien, 2012; Scimone et al., 2014, new putative EGF ligand, nrg-1, the silencing of which phenocopies 2011; Wagner et al., 2011). Despite recent advances, the genes and the defects observed in egfr-1(RNAi) animals. These findings indicate molecular pathways that regulate the differentiation of known that egfr-1 and nrg-1 promote gut progenitor differentiation, and progenitors into distinct mature cell types remain poorly are thus essential for normal cell turnover and regeneration in understood. -
Spatial and Ecological Overlap Between Coexisting Sexual And
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Groningen University of Groningen Spatial and ecological overlap between coexisting sexual and parthenogenetic Schmidtea polychroa (Tricladida; Platyhelminthes) Weinzierl, Rolf P.; Beukeboom, Leo W.; Gerace, Letizia; Michiels, Nicolaas K. Published in: Hydrobiologia DOI: 10.1023/A:1003519418925 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 1999 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Weinzierl, R. P., Beukeboom, L. W., Gerace, L., & Michiels, N. K. (1999). Spatial and ecological overlap between coexisting sexual and parthenogenetic Schmidtea polychroa (Tricladida; Platyhelminthes). Hydrobiologia, 392(2), 179-185. https://doi.org/10.1023/A:1003519418925 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 12-11-2019 Hydrobiologia 392: 179–185, 1999. -
Planarian (Platyhelminthes, Tricladida) Diversity and Molecular Markers: a New View of an Old Group
Diversity 2014, 6, 323-338; doi:10.3390/d6020323 OPEN ACCESS diversity ISSN 1424-2818 www.mdpi.com/journal/diversity Review Planarian (Platyhelminthes, Tricladida) Diversity and Molecular Markers: A New View of an Old Group Marta Álvarez-Presas and Marta Riutort * Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Avinguda Diagonal 643, E-08028 Barcelona, Spain; E-mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.:+34 934035432. Received: 6 February 2014; in revised form: 24 March 2014 / Accepted: 27 March 2014 / Published: 15 April 2014 Abstract: Planarians are a group of free-living platyhelminths (triclads) best-known largely due to long-standing regeneration and pattern formation research. However, the group’s diversity and evolutionary history has been mostly overlooked. A few taxonomists have focused on certain groups, resulting in the description of many species and the establishment of higher-level groups within the Tricladida. However, the scarcity of morphological features precludes inference of phylogenetic relationships among these taxa. The incorporation of molecular markers to study their diversity and phylogenetic relationships has facilitated disentangling many conundrums related to planarians and even allowed their use as phylogeographic model organisms. Here, we present some case examples ranging from delimiting species in an integrative style, and barcoding them, to analysing their evolutionary history on a lower scale to infer processes affecting biodiversity origin, or on a higher scale to understand the genus level or even higher relationships. In many cases, these studies have allowed proposing better classifications and resulted in taxonomical changes.