Base-Rate Respect: from Ecological Rationality to Dual Processes

Total Page:16

File Type:pdf, Size:1020Kb

Base-Rate Respect: from Ecological Rationality to Dual Processes BEHAVIORAL AND BRAIN SCIENCES (2007) 30, 241–297 Printed in the United States of America DOI: 10.1017/S0140525X07001653 Base-rate respect: From ecological rationality to dual processes Aron K. Barbey Cognitive Neuroscience Section, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892-1440 [email protected] Steven A. Sloman Cognitive and Linguistics Science, Brown University, Providence, RI 02912 [email protected] http://www.cog.brown.edu/sloman/ Abstract: The phenomenon of base-rate neglect has elicited much debate. One arena of debate concerns how people make judgments under conditions of uncertainty. Another more controversial arena concerns human rationality. In this target article, we attempt to unpack the perspectives in the literature on both kinds of issues and evaluate their ability to explain existing data and their conceptual coherence. From this evaluation we conclude that the best account of the data should be framed in terms of a dual- process model of judgment, which attributes base-rate neglect to associative judgment strategies that fail to adequately represent the set structure of the problem. Base-rate neglect is reduced when problems are presented in a format that affords accurate representation in terms of nested sets of individuals. Keywords: Base-rate neglect; Bayesian reasoning; dual process theory; nested set hypothesis; probability judgment 1. Introduction (e.g., a positive mammography). Consider the following Bayesian inference problem presented by Gigerenzer and Diagnosing whether a patient has a disease, predicting Hoffrage (1995; adapted from Eddy 1982): whether a defendant is guilty of a crime, and other every- The probability of breast cancer is 1% for a woman at age forty day as well as life-changing decisions reflect, in part, the who participates in routine screening [base-rate]. If a woman decision-maker’s subjective degree of belief in uncertain has breast cancer, the probability is 80% that she will get a events. Intuitions about probability frequently deviate dra- positive mammography [hit-rate]. If a woman does not have matically from the dictates of probability theory (e.g., Gilo- breast cancer, the probability is 9.6% that she will also get a vich et al. 2002). One form of deviation is notorious: positive mammography [false-alarm rate]. A woman in this people’s tendency to neglect base-rates in favor of specific age group had a positive mammography in a routine screening. case data. A number of theorists (e.g., Brase 2002a; Cos- What is the probability that she actually has breast cancer? _%. mides & Tooby 1996; Gigerenzer & Hoffrage 1995) have (Gigerenzer & Hoffrage 1995, p. 685) argued that such neglect reveals little more than exper- imenters’ failure to ask about uncertainty in a form that naı¨ve respondents can understand – specifically, in the form of a question about natural frequencies. The brunt ARON BARBEY is a doctoral student of Lawrence of our argument in this target article is that this perspec- W. Barsalou in the Cognition and Development tive is far too narrow. After surveying the theoretical per- Program at Emory University. His research ad- spectives on the issue, we show that both data and dresses the cognitive and neural bases of human conceptual considerations demand that judgment be learning and inference. Upon graduation, he understood in terms of dual processing systems: one that will join the Cognitive Neuroscience Section of is responsible for systematic error and another that is the National Institute of Neurological Disorders capable of reasoning not just about natural frequencies, and Stroke as a post-doctoral fellow under the but about relations among any kind of set representation. supervision of Jordan Grafman. Base-rate neglect has been extensively studied in the context of Bayes’ theorem, which provides a normative stan- STEVEN SLOMAN is Professor of Cognitive and dard for updating the probability of a hypothesis in light of Linguistic Sciences at Brown University. He is new evidence. Research has evaluated the extent to which the author of Causal Models: How People Think intuitive probability judgment conforms to the theorem About the World and Its Alternatives (Oxford by employing a Bayesian inference task in which the University Press, 2005). He has also authored respondent is presented a word problem and has to infer numerous publications in the areas of reasoning, the probability of a hypothesis (e.g., the presence versus categorization, judgment, and decision making. absence of breast cancer) on the basis of an observation # 2007 Cambridge University Press 0140-525x/07 $40.00 241 Downloaded from https:/www.cambridge.org/core. University of Basel Library, on 30 May 2017 at 21:05:04, subject to the Cambridge Core terms of use, available at https:/www.cambridge.org/core/terms. https://doi.org/10.1017/S0140525X07001756 Barbey & Sloman: Base-rate respect According to Bayes’ theorem,1 the probability that the answer when presented with single-event probabilities. patient has breast cancer given that she has a positive Cosmides and Tooby then transformed the single-event mammography is 7.8%. Evidence that people’s judgments probabilities into natural frequencies, resulting in a on this problem accord with Bayes’ theorem would be con- remarkably high proportion of Bayesian responses: 72% sistent with the claim that the mind embodies a calculus of of respondents generated the Bayesian solution, support- probability, whereas the lack of such a correspondence ing the authors’ conclusion that Bayesian inference would demonstrate that people’s judgments can be at var- depends on the use of natural frequencies. iance with sound probabilistic principles and, as a conse- Gigerenzer (1996) explored whether physicians, who quence, that people can be led to make incoherent frequently assess and diagnose medical illness, would decisions (Ramsey 1964; Savage 1954). Thus, the extent demonstrate the same pattern of judgments as that of clini- to which intuitive probability judgment conforms to the cally untrained college undergraduates. Consistent with normative prescriptions of Bayes’ theorem has impli- the judgments drawn by college students (e.g., Gigerenzer cations for the nature of human judgment (for a review & Hoffrage 1995), Gigerenzer found that the sample of 48 of the theoretical debate on human rationality, see Stano- physicians tested generated the Bayesian solution in only vich 1999). In the case of Eddy’s study, fewer than 5% of 10% of the cases under single-event probability formats, the respondents generated the Bayesian solution. whereas 46% did so with natural frequency formats. Phys- Early studies evaluating Bayesian inference under single- icians spent about 25% more time on the single-event event probabilities also showed systematic deviations from probability problems, which suggests that they found Bayes’ theorem. Hammerton (1973), for example, found these problems more difficult to solve than problems pre- that only 10% of the physicians tested generated the sented in a natural frequency format. Thus, the physician’s Bayesian solution, with the median response approxi- judgments were consistent with those of non-physicians, mating the hit-rate of the test. Similarly, Casscells et al. suggesting that formal training in medical diagnosis does (1978) and Eddy (1982) found that a low proportion of not lead to more accurate Bayesian reasoning and that respondents generated the Bayesian solution: 18% in the natural frequencies facilitate probabilistic inference former and 5% in the latter, with the modal response in across populations. each study corresponding to the hit-rate of the test. All Further studies have demonstrated that the facilitory of this suggests that the mind does not normally reason effect of natural frequencies on Bayesian inference in a way consistent with the laws of probability theory. observed in the laboratory has the potential for improving the predictive accuracy of professionals in important real- world settings. Gigerenzer and his colleagues have shown, 1.1. Base-rate facilitation for example, that natural frequencies facilitate Bayesian However, this conclusion has not been drawn universally. inference in AIDS counseling (Gigerenzer et al. 1998), Eddy’s (1982) problem concerned a single event, the prob- in the assessment of statistical information by judges ability that a particular woman has breast cancer. In some (Lindsey et al. 2003), and in teaching Bayesian reasoning problems, when probabilities that refer to the chances of a to college undergraduates (Kuzenhauser & Hoffrage single event occurring (e.g., 1%) are reformulated and pre- 2002; Sedlmeier & Gigerenzer 2001). In summary, the sented in terms of natural frequency formats (e.g., 10 out reviewed findings demonstrate facilitation in Bayesian of 1,000), people more often draw probability estimates inference when single-event probabilities are translated that conform to Bayes’ theorem. Consider the following into natural frequencies, consistent with the view that mammography problem presented in a natural frequency coherent probability judgment depends on natural fre- format by Gigerenzer and Hoffrage (1995): quency representations. 10 out of every 1,000 women at age forty who participate in routine screening have breast cancer [base-rate]. 8 out of 1.2. Theoretical accounts every 10 women with breast cancer will get a positive mammo- graphy [hit-rate]. 95 out of every 990 women without breast Explanations of facilitation in Bayesian
Recommended publications
  • The Bayesian Approach to Statistics
    THE BAYESIAN APPROACH TO STATISTICS ANTHONY O’HAGAN INTRODUCTION the true nature of scientific reasoning. The fi- nal section addresses various features of modern By far the most widely taught and used statisti- Bayesian methods that provide some explanation for the rapid increase in their adoption since the cal methods in practice are those of the frequen- 1980s. tist school. The ideas of frequentist inference, as set out in Chapter 5 of this book, rest on the frequency definition of probability (Chapter 2), BAYESIAN INFERENCE and were developed in the first half of the 20th century. This chapter concerns a radically differ- We first present the basic procedures of Bayesian ent approach to statistics, the Bayesian approach, inference. which depends instead on the subjective defini- tion of probability (Chapter 3). In some respects, Bayesian methods are older than frequentist ones, Bayes’s Theorem and the Nature of Learning having been the basis of very early statistical rea- Bayesian inference is a process of learning soning as far back as the 18th century. Bayesian from data. To give substance to this statement, statistics as it is now understood, however, dates we need to identify who is doing the learning and back to the 1950s, with subsequent development what they are learning about. in the second half of the 20th century. Over that time, the Bayesian approach has steadily gained Terms and Notation ground, and is now recognized as a legitimate al- ternative to the frequentist approach. The person doing the learning is an individual This chapter is organized into three sections.
    [Show full text]
  • Scalable and Robust Bayesian Inference Via the Median Posterior
    Scalable and Robust Bayesian Inference via the Median Posterior CS 584: Big Data Analytics Material adapted from David Dunson’s talk (http://bayesian.org/sites/default/files/Dunson.pdf) & Lizhen Lin’s ICML talk (http://techtalks.tv/talks/scalable-and-robust-bayesian-inference-via-the-median-posterior/61140/) Big Data Analytics • Large (big N) and complex (big P with interactions) data are collected routinely • Both speed & generality of data analysis methods are important • Bayesian approaches offer an attractive general approach for modeling the complexity of big data • Computational intractability of posterior sampling is a major impediment to application of flexible Bayesian methods CS 584 [Spring 2016] - Ho Existing Frequentist Approaches: The Positives • Optimization-based approaches, such as ADMM or glmnet, are currently most popular for analyzing big data • General and computationally efficient • Used orders of magnitude more than Bayes methods • Can exploit distributed & cloud computing platforms • Can borrow some advantages of Bayes methods through penalties and regularization CS 584 [Spring 2016] - Ho Existing Frequentist Approaches: The Drawbacks • Such optimization-based methods do not provide measure of uncertainty • Uncertainty quantification is crucial for most applications • Scalable penalization methods focus primarily on convex optimization — greatly limits scope and puts ceiling on performance • For non-convex problems and data with complex structure, existing optimization algorithms can fail badly CS 584 [Spring 2016] -
    [Show full text]
  • 1 Estimation and Beyond in the Bayes Universe
    ISyE8843A, Brani Vidakovic Handout 7 1 Estimation and Beyond in the Bayes Universe. 1.1 Estimation No Bayes estimate can be unbiased but Bayesians are not upset! No Bayes estimate with respect to the squared error loss can be unbiased, except in a trivial case when its Bayes’ risk is 0. Suppose that for a proper prior ¼ the Bayes estimator ±¼(X) is unbiased, Xjθ (8θ)E ±¼(X) = θ: This implies that the Bayes risk is 0. The Bayes risk of ±¼(X) can be calculated as repeated expectation in two ways, θ Xjθ 2 X θjX 2 r(¼; ±¼) = E E (θ ¡ ±¼(X)) = E E (θ ¡ ±¼(X)) : Thus, conveniently choosing either EθEXjθ or EX EθjX and using the properties of conditional expectation we have, θ Xjθ 2 θ Xjθ X θjX X θjX 2 r(¼; ±¼) = E E θ ¡ E E θ±¼(X) ¡ E E θ±¼(X) + E E ±¼(X) θ Xjθ 2 θ Xjθ X θjX X θjX 2 = E E θ ¡ E θ[E ±¼(X)] ¡ E ±¼(X)E θ + E E ±¼(X) θ Xjθ 2 θ X X θjX 2 = E E θ ¡ E θ ¢ θ ¡ E ±¼(X)±¼(X) + E E ±¼(X) = 0: Bayesians are not upset. To check for its unbiasedness, the Bayes estimator is averaged with respect to the model measure (Xjθ), and one of the Bayesian commandments is: Thou shall not average with respect to sample space, unless you have Bayesian design in mind. Even frequentist agree that insisting on unbiasedness can lead to bad estimators, and that in their quest to minimize the risk by trading off between variance and bias-squared a small dosage of bias can help.
    [Show full text]
  • Introduction to Bayesian Inference and Modeling Edps 590BAY
    Introduction to Bayesian Inference and Modeling Edps 590BAY Carolyn J. Anderson Department of Educational Psychology c Board of Trustees, University of Illinois Fall 2019 Introduction What Why Probability Steps Example History Practice Overview ◮ What is Bayes theorem ◮ Why Bayesian analysis ◮ What is probability? ◮ Basic Steps ◮ An little example ◮ History (not all of the 705+ people that influenced development of Bayesian approach) ◮ In class work with probabilities Depending on the book that you select for this course, read either Gelman et al. Chapter 1 or Kruschke Chapters 1 & 2. C.J. Anderson (Illinois) Introduction Fall 2019 2.2/ 29 Introduction What Why Probability Steps Example History Practice Main References for Course Throughout the coures, I will take material from ◮ Gelman, A., Carlin, J.B., Stern, H.S., Dunson, D.B., Vehtari, A., & Rubin, D.B. (20114). Bayesian Data Analysis, 3rd Edition. Boco Raton, FL, CRC/Taylor & Francis.** ◮ Hoff, P.D., (2009). A First Course in Bayesian Statistical Methods. NY: Sringer.** ◮ McElreath, R.M. (2016). Statistical Rethinking: A Bayesian Course with Examples in R and Stan. Boco Raton, FL, CRC/Taylor & Francis. ◮ Kruschke, J.K. (2015). Doing Bayesian Data Analysis: A Tutorial with JAGS and Stan. NY: Academic Press.** ** There are e-versions these of from the UofI library. There is a verson of McElreath, but I couldn’t get if from UofI e-collection. C.J. Anderson (Illinois) Introduction Fall 2019 3.3/ 29 Introduction What Why Probability Steps Example History Practice Bayes Theorem A whole semester on this? p(y|θ)p(θ) p(θ|y)= p(y) where ◮ y is data, sample from some population.
    [Show full text]
  • Statistical Inference: Paradigms and Controversies in Historic Perspective
    Jostein Lillestøl, NHH 2014 Statistical inference: Paradigms and controversies in historic perspective 1. Five paradigms We will cover the following five lines of thought: 1. Early Bayesian inference and its revival Inverse probability – Non-informative priors – “Objective” Bayes (1763), Laplace (1774), Jeffreys (1931), Bernardo (1975) 2. Fisherian inference Evidence oriented – Likelihood – Fisher information - Necessity Fisher (1921 and later) 3. Neyman- Pearson inference Action oriented – Frequentist/Sample space – Objective Neyman (1933, 1937), Pearson (1933), Wald (1939), Lehmann (1950 and later) 4. Neo - Bayesian inference Coherent decisions - Subjective/personal De Finetti (1937), Savage (1951), Lindley (1953) 5. Likelihood inference Evidence based – likelihood profiles – likelihood ratios Barnard (1949), Birnbaum (1962), Edwards (1972) Classical inference as it has been practiced since the 1950’s is really none of these in its pure form. It is more like a pragmatic mix of 2 and 3, in particular with respect to testing of significance, pretending to be both action and evidence oriented, which is hard to fulfill in a consistent manner. To keep our minds on track we do not single out this as a separate paradigm, but will discuss this at the end. A main concern through the history of statistical inference has been to establish a sound scientific framework for the analysis of sampled data. Concepts were initially often vague and disputed, but even after their clarification, various schools of thought have at times been in strong opposition to each other. When we try to describe the approaches here, we will use the notions of today. All five paradigms of statistical inference are based on modeling the observed data x given some parameter or “state of the world” , which essentially corresponds to stating the conditional distribution f(x|(or making some assumptions about it).
    [Show full text]
  • Bayesian Inference for Median of the Lognormal Distribution K
    Journal of Modern Applied Statistical Methods Volume 15 | Issue 2 Article 32 11-1-2016 Bayesian Inference for Median of the Lognormal Distribution K. Aruna Rao SDM Degree College, Ujire, India, [email protected] Juliet Gratia D'Cunha Mangalore University, Mangalagangothri, India, [email protected] Follow this and additional works at: http://digitalcommons.wayne.edu/jmasm Part of the Applied Statistics Commons, Social and Behavioral Sciences Commons, and the Statistical Theory Commons Recommended Citation Rao, K. Aruna and D'Cunha, Juliet Gratia (2016) "Bayesian Inference for Median of the Lognormal Distribution," Journal of Modern Applied Statistical Methods: Vol. 15 : Iss. 2 , Article 32. DOI: 10.22237/jmasm/1478003400 Available at: http://digitalcommons.wayne.edu/jmasm/vol15/iss2/32 This Regular Article is brought to you for free and open access by the Open Access Journals at DigitalCommons@WayneState. It has been accepted for inclusion in Journal of Modern Applied Statistical Methods by an authorized editor of DigitalCommons@WayneState. Bayesian Inference for Median of the Lognormal Distribution Cover Page Footnote Acknowledgements The es cond author would like to thank Government of India, Ministry of Science and Technology, Department of Science and Technology, New Delhi, for sponsoring her with an INSPIRE fellowship, which enables her to carry out the research program which she has undertaken. She is much honored to be the recipient of this award. This regular article is available in Journal of Modern Applied Statistical Methods: http://digitalcommons.wayne.edu/jmasm/vol15/ iss2/32 Journal of Modern Applied Statistical Methods Copyright © 2016 JMASM, Inc. November 2016, Vol. 15, No. 2, 526-535.
    [Show full text]
  • 9 Bayesian Inference
    9 Bayesian inference 1702 - 1761 9.1 Subjective probability This is probability regarded as degree of belief. A subjective probability of an event A is assessed as p if you are prepared to stake £pM to win £M and equally prepared to accept a stake of £pM to win £M. In other words ... ... the bet is fair and you are assumed to behave rationally. 9.1.1 Kolmogorov’s axioms How does subjective probability fit in with the fundamental axioms? Let A be the set of all subsets of a countable sample space Ω. Then (i) P(A) ≥ 0 for every A ∈A; (ii) P(Ω)=1; 83 (iii) If {Aλ : λ ∈ Λ} is a countable set of mutually exclusive events belonging to A,then P Aλ = P (Aλ) . λ∈Λ λ∈Λ Obviously the subjective interpretation has no difficulty in conforming with (i) and (ii). (iii) is slightly less obvious. Suppose we have 2 events A and B such that A ∩ B = ∅. Consider a stake of £pAM to win £M if A occurs and a stake £pB M to win £M if B occurs. The total stake for bets on A or B occurring is £pAM+ £pBM to win £M if A or B occurs. Thus we have £(pA + pB)M to win £M and so P (A ∪ B)=P(A)+P(B) 9.1.2 Conditional probability Define pB , pAB , pA|B such that £pBM is the fair stake for £M if B occurs; £pABM is the fair stake for £M if A and B occur; £pA|BM is the fair stake for £M if A occurs given B has occurred − other- wise the bet is off.
    [Show full text]
  • Bayesian Inference
    Bayesian Inference Thomas Nichols With thanks Lee Harrison Bayesian segmentation Spatial priors Posterior probability Dynamic Causal and normalisation on activation extent maps (PPMs) Modelling Attention to Motion Paradigm Results SPC V3A V5+ Attention – No attention Büchel & Friston 1997, Cereb. Cortex Büchel et al. 1998, Brain - fixation only - observe static dots + photic V1 - observe moving dots + motion V5 - task on moving dots + attention V5 + parietal cortex Attention to Motion Paradigm Dynamic Causal Models Model 1 (forward): Model 2 (backward): attentional modulation attentional modulation of V1→V5: forward of SPC→V5: backward Photic SPC Attention Photic SPC V1 V1 - fixation only V5 - observe static dots V5 - observe moving dots Motion Motion - task on moving dots Attention Bayesian model selection: Which model is optimal? Responses to Uncertainty Long term memory Short term memory Responses to Uncertainty Paradigm Stimuli sequence of randomly sampled discrete events Model simple computational model of an observers response to uncertainty based on the number of past events (extent of memory) 1 2 3 4 Question which regions are best explained by short / long term memory model? … 1 2 40 trials ? ? Overview • Introductory remarks • Some probability densities/distributions • Probabilistic (generative) models • Bayesian inference • A simple example – Bayesian linear regression • SPM applications – Segmentation – Dynamic causal modeling – Spatial models of fMRI time series Probability distributions and densities k=2 Probability distributions
    [Show full text]
  • Bayesian Inference and Bayesian Model Selection
    Bayesian inference and Bayesian model selection Klaas Enno Stephan Lecture as part of "Methods & Models for fMRI data analysis", University of Zurich & ETH Zurich, 27 November 2018 With slides from and many thanks to: Kay Brodersen, Will Penny, Sudhir Shankar Raman Why should I know about Bayesian inference? Because Bayesian principles are fundamental for • statistical inference in general • system identification • translational neuromodeling ("computational assays") – computational psychiatry – computational neurology – computational psychosomatics • contemporary theories of brain function (the "Bayesian brain") – predictive coding – free energy principle – active inference Why should I know about Bayesian inference? Because Bayesian principles are fundamental for • statistical inference in general • system identification • translational neuromodeling ("computational assays") – computational psychiatry – computational neurology – computational psychosomatics • contemporary theories of brain function (the "Bayesian brain") – predictive coding – free energy principle – active inference Bayes' theorem The Reverend Thomas Bayes (1702-1761) p( y | ) p ( ) “... the theorem expresses py( | ) how a ... degree of belief should rationally change to py() account for availability of related evidence." posterior = likelihood ∙ prior / evidence Wikipedia Bayes' theorem The Reverend Thomas Bayes (1702-1761) p( y | ) p ( ) “... the theorem expresses py( | ) how a ... degree of belief p( y | ) p ( ) should rationally change to account for availability of related evidence." posterior = likelihood ∙ prior / evidence Wikipedia Bayesian inference: an animation The evidence term continuous p( y | ) p ( ) p( y | ) p ( ) pydiscrete( | ) py( | ) p( y | ) p ( ) p( y | ) p ( ) Bayesian inference: An example (with fictitious probabilities) • symptom: y 1: ebola 0: AOD y=1: fever y=0: no fever 1: fever 99.99% 20% • disease: p(y|) =1: Ebola 0: no fever 0.01% 80% =0: any other disease (AOD) • A priori: p(Ebola) =10-6 p(AOD) = (1-10-6) • A patient presents with fever.
    [Show full text]
  • Bayesian Inference in the Linear Regression Model
    Bayesian Inference in the Linear Regression Model Econ 690 Purdue University Justin L. Tobias (Purdue) Bayesian Regression 1 / 35 Outline 1 The Model and Likelihood 2 Results Under a Non-Informative Prior 3 Example With Real Data 4 Results With a Conjugate Prior 5 Marginal likelihood in the LRM Justin L. Tobias (Purdue) Bayesian Regression 2 / 35 The inverse Gamma distribution (again!) We denote the inverted Gamma density as Y ∼ IG (α; β). Though different parameterizations exist (particularly for how β enters the density), we utilize the following form here: Y ∼ IG(α; β) ) p(y) = [Γ(α)βα]−1y −(α+1) exp(−1=[yβ]); y > 0: The mean of this inverse Gamma is E(Y ) = [β(α − 1)]−1. Jump to Prior 1, σ2 posterior Jump to Prior 1, β posterior Justin L. Tobias (Purdue) Bayesian Regression 3 / 35 The student-t distribution (again) 0 A continuous k−dimensional random vector, Y = (Y1; ::; Yk ) , has a t distribution with mean µ (a k−vector), scale matrix Σ (a k × k positive definite matrix) and ν (a positive scalar referred to as a degrees of freedom parameter), denoted Y ∼ t (µ, Σ; ν), if its p.d.f. is given by: 1 ν+k 1 − 0 −1 − 2 ft (yjµ, Σ; ν) = jΣj 2 ν + (y − µ) Σ (y − µ) ; ct Jump to Prior 1, β posterior Justin L. Tobias (Purdue) Bayesian Regression 4 / 35 The Linear Regression Model The linear regression model is the workhorse of econometrics. We will describe Bayesian inference in this model under 2 different priors.
    [Show full text]
  • On the Derivation of the Bayesian Information Criterion
    On the derivation of the Bayesian Information Criterion H. S. Bhat∗† N. Kumar∗ November 8, 2010 Abstract We present a careful derivation of the Bayesian Inference Criterion (BIC) for model selection. The BIC is viewed here as an approximation to the Bayes Factor. One of the main ingredients in the approximation, the use of Laplace’s method for approximating integrals, is explained well in the literature. Our derivation sheds light on this and other steps in the derivation, such as the use of a flat prior and the invocation of the weak law of large numbers, that are not often discussed in detail. 1 Notation Let us define the notation that we will use: y : observed data y1,...,yn Mi : candidate model P (y|Mi) : marginal likelihood of the model Mi given the data θi : vector of parameters in the model Mi gi(θi) : the prior density of the parameters θi f(y|θi) : the density of the data given the parameters θi L(θi|y) : the likelihood of y given the model Mi θˆi : the MLE of θi that maximizes L(θi|y) 2 Bayes Factor The Bayesian approach to model selection [1] is to maximize the posterior probability of n a model (Mi) given the data {yj}j=1. Applying Bayes theorem to calculate the posterior ∗School of Natural Sciences, University of California, Merced, 5200 N. Lake Rd., Merced, CA 95343 †Corresponding author, email: [email protected] 1 probability of a model given the data, we get P (y1,...,yn|Mi)P (Mi) P (Mi|y1,...,yn)= , (1) P (y1,...,yn) where P (y1,...,yn|Mi) is called the marginal likelihood of the model Mi.
    [Show full text]
  • Bayesian Alternatives for Common Null-Hypothesis Significance Tests
    Quintana and Eriksen Bayesian alternatives for common null-hypothesis significance tests in psychiatry: A non-technical guide using JASP Daniel S Quintana* and Jon Alm Eriksen *Correspondence: [email protected] Abstract NORMENT, KG Jebsen Centre for Psychosis Research, Division of Despite its popularity, null hypothesis significance testing (NHST) has several Mental Health and Addiction, limitations that restrict statistical inference. Bayesian analysis can address many University of Oslo and Oslo of these limitations, however, this approach has been underutilized largely due to University Hospital, Oslo, Norway Full list of author information is a dearth of accessible software options. JASP is a new open-source statistical available at the end of the article package that facilitates both Bayesian and NHST analysis using a graphical interface. The aim of this article is to provide an applied introduction to Bayesian inference using JASP. First, we will provide a brief background outlining the benefits of Bayesian inference. We will then use JASP to demonstrate Bayesian alternatives for several common null hypothesis significance tests. While Bayesian analysis is by no means a new method, this type of statistical inference has been largely inaccessible for most psychiatry researchers. JASP provides a straightforward means of performing Bayesian analysis using a graphical “point and click” environment that will be familiar to researchers conversant with other graphical statistical packages, such as SPSS. Keywords: Bayesian statistics; null hypothesis significance tests; p-values; statistics; software Consider the development of a new drug to treat social dysfunction. Before reaching the public, scientists need to demonstrate drug efficacy by performing a randomized- controlled trial (RCT) whereby participants are randomized to receive the drug or placebo.
    [Show full text]