Aplocheilus Lineatus) Ecological Risk Screening Summary
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
A New Genus of Miniature Cynolebiasine from the Atlantic
64 (1): 23 – 33 © Senckenberg Gesellschaft für Naturforschung, 2014. 16.5.2014 A new genus of miniature cynolebiasine from the Atlantic Forest and alternative biogeographical explanations for seasonal killifish distribution patterns in South America (Cyprinodontiformes: Rivulidae) Wilson J. E. M. Costa Laboratório de Sistemática e Evolução de Peixes Teleósteos, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944 – 970, Rio de Janeiro, Brasil; wcosta(at)acd.ufrj.br Accepted 21.ii.2014. Published online at www.senckenberg.de/vertebrate-zoology on 30.iv.2014. Abstract The analysis of 78 morphological characters for 16 species representing all the lineages of the tribe Cynopoecilini and three out-groups, indicates that the incertae sedis miniature species ‘Leptolebias’ leitaoi Cruz & Peixoto is the sister group of a clade comprising the genera Leptolebias, Campellolebias, and Cynopoecilus, consequently recognised as the only member of a new genus. Mucurilebias gen. nov. is diagnosed by seven autapomorphies: eye occupying great part of head side, low number of caudal-fin rays (21), distal portion of epural much broader than distal portion of parhypural, an oblique red bar through opercle in both sexes, isthmus bright red in males, a white stripe on the distal margin of the dorsal fin in males, and a red stripe on the distal margin of the anal fin in males.Mucurilebias leitaoi is an endangered seasonal species endemic to the Mucuri river basin. The biogeographical analysis of genera of the subfamily Cynolebiasinae using a dispersal-vicariance, event-based parsimony approach indicates that distribution of South American killifishes may be broadly shaped by dispersal events. -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
Edna Assay Development
Environmental DNA assays available for species detection via qPCR analysis at the U.S.D.A Forest Service National Genomics Center for Wildlife and Fish Conservation (NGC). Asterisks indicate the assay was designed at the NGC. This list was last updated in June 2021 and is subject to change. Please contact [email protected] with questions. Family Species Common name Ready for use? Mustelidae Martes americana, Martes caurina American and Pacific marten* Y Castoridae Castor canadensis American beaver Y Ranidae Lithobates catesbeianus American bullfrog Y Cinclidae Cinclus mexicanus American dipper* N Anguillidae Anguilla rostrata American eel Y Soricidae Sorex palustris American water shrew* N Salmonidae Oncorhynchus clarkii ssp Any cutthroat trout* N Petromyzontidae Lampetra spp. Any Lampetra* Y Salmonidae Salmonidae Any salmonid* Y Cottidae Cottidae Any sculpin* Y Salmonidae Thymallus arcticus Arctic grayling* Y Cyrenidae Corbicula fluminea Asian clam* N Salmonidae Salmo salar Atlantic Salmon Y Lymnaeidae Radix auricularia Big-eared radix* N Cyprinidae Mylopharyngodon piceus Black carp N Ictaluridae Ameiurus melas Black Bullhead* N Catostomidae Cycleptus elongatus Blue Sucker* N Cichlidae Oreochromis aureus Blue tilapia* N Catostomidae Catostomus discobolus Bluehead sucker* N Catostomidae Catostomus virescens Bluehead sucker* Y Felidae Lynx rufus Bobcat* Y Hylidae Pseudocris maculata Boreal chorus frog N Hydrocharitaceae Egeria densa Brazilian elodea N Salmonidae Salvelinus fontinalis Brook trout* Y Colubridae Boiga irregularis Brown tree snake* -
Zootaxa, Pisces, Actinopterygii, Cyprinodontiformes, Rivulidae
Zootaxa 928: 1–20 (2005) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 928 Copyright © 2005 Magnolia Press ISSN 1175-5334 (online edition) Kryptolebias sepia n. sp. (Actinopterygii: Cyprinodontiformes: Riv- ulidae), a new killifish from the Tapanahony River drainage in southeast Surinam FRANS B. M. VERMEULEN1 & TOMAS HRBEK2* 1 Tanki Leendert 194 c, Noord, Aruba; [email protected] 2 Department of Biology, University of Puerto Rico Rio Piedras, San Juan, PR 00931, Puerto Rico; [email protected] * Correspondence to: TOMAS HRBEK Abstract Kryptolebias sepia n. sp. is described from small forest tributaries of the Tapanahony and Palumeu Rivers which form part of the Upper Marowijne River system in southeast of Surinam. This species is distinguished from all other Kryptolebias spp. and Rivulus spp. by strong melanism on the body, its ability to change color pattern rapidly, the lack of strong sexual dimorphism, and the presence of pronounced adult/juvenile dichromatism. Key words: Rivulus, Kryptolebias, Guyana Shield, mtDNA, speciation, molecular phylogeny, biodiversity Introduction The fauna and flora of the Guyana shield is particularly rich. While extensive floristic sur- veys have been undertaken, relatively little work has been conducted on the fish fauna of this region. Most surveys have been done in Venezuela, and Brazilian surveys have con- centrated primarily on the middle Rio Negro drainage. The first and last major survey of Guyana was conducted by Eigenmann in 1909 (Eigenmann 1912), and more recently his route has been retraced by researchers focusing on loricariid catfishes (Hardman et al. 2002). A survey of freshwater fishes of French Guiana has also been published (Keith et al. -
A Replacement Name for the Preoccupied Genus Name Adamas Huber, 1979 (Actinopterygii: Cyprinodontiformes)
_____________Mun. Ent. Zool. Vol. 1, No. 1, January 2006___________ 167 A REPLACEMENT NAME FOR THE PREOCCUPIED GENUS NAME ADAMAS HUBER, 1979 (ACTINOPTERYGII: CYPRINODONTIFORMES) Hüseyin Özdikmen*, Nazmi Polat**, Mahmut Yılmaz*** and Okan Yazıcıoğlu*** * Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mail: [email protected] ** Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mail: [email protected] *** Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mails: [email protected]; [Özdikmen, H., Polat, N., Yılmaz, M. & Yazıcıoğlu, O. 2006. A replacement name for the preoccupied genus name Adamas Huber, 1979 (Actinopterygii: Cyprinodontiformes). Munis Entomology & Zoology, 1 (1): 167-168] ABSTRACT: A replacement name, Fenerbahce is proposed for the genus name Adamas Huber, 1979 in the fish family Aplocheilidae (Cyprinodontiformes). KEY WORDS: Fenerbahce, Adamas, homonymy, replacement name, Actinopterygii, Cyprinodontiformes, Aplocheilidae. Class Actinopterygii Order Cyprinodontiformes Family Aplocheilidae Genus Fenerbahce nom. nov. Adamas Huber, 1979. Journal Am. Killifish Ass. 12 (6): 166 and Revue fr. Aquariol. Herpetol. 6 (1): 6. (Actinopterygii: Cyprinodontiformes: Aplocheiloidei: Aplocheilidae: Aplocheilinae). Preoccupied by Adamas Malaise, 1945. Opusc. ent., Lund, Suppl. 4, 97. (Hymenoptera: Symphyta: Tenthredinoidea: Tenthredinidae: Allantinae: Adamasini). The genus name Adamas was proposed by Malaise, 1945 as an objective replacement name of the genus Dinax Konow, 1897 with the type species Dinax jakowleffi Konow, 1897. For the present, the genus Adamas Malaise, 1945 includes six species (Wei, 2004). Subsequently, the genus Adamas was described by Huber, 1979 with the type species Adamas formosus Huber, 1979 by monotypy from in front of Ntokou village near the banks of Likouala-Mossaka River, Congo. -
Monophyly and Taxonomy of the Neotropical Seasonal Killifish Genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the Description of a New Genus
Zoological Journal of the Linnean Society, 2008, 153, 147–160. With 11 figures Monophyly and taxonomy of the Neotropical seasonal killifish genus Leptolebias (Teleostei: Aplocheiloidei: Rivulidae), with the description of a new genus WILSON J. E. M. COSTA* Downloaded from https://academic.oup.com/zoolinnean/article/153/1/147/2606377 by guest on 23 November 2020 Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brazil Received 30 March 2007; accepted for publication 4 July 2007 A phylogenetic analysis based on morphological characters indicates that Leptolebias Myers, 1952, a genus of small killifishes highly threatened with extinction, from Brazil, is paraphyletic. As a consequence, Leptolebias is restricted in this study to a well-supported clade that includes Leptolebias marmoratus (Ladiges, 1934), Leptolebias splendens (Myers, 1942), Leptolebias opalescens (Myers, 1942), and Leptolebias citrinipinnis (Costa, Lacerda & Tanizaki, 1988), from the coastal plains of Rio de Janeiro, and Leptolebias aureoguttatus (Cruz, 1974) (herein redescribed, and for which a lectotype is designated) and Leptolebias itanhaensis sp. nov., from the coastal plains of São Paulo and Paraná, in southern Brazil. Leptolebias is diagnosed by three synapomorphies: a caudal fin that is longer than deep, a single anterior supraorbital neuromast, and dark pigmentation that does not extend to the distal portion of the dorsal fin in males. A key is provided for the identification of species of Leptolebias. Three species formerly placed in Leptolebias, Leptolebias minimus (Myers, 1942), Leptolebias fractifasciatus (Costa, 1988), and Leptolebias cruzi (Costa, 1988), are transferred to Notholebias gen. -
The Neotropical Genus Austrolebias: an Emerging Model of Annual Killifishes Nibia Berois1, Maria J
lopmen ve ta e l B D io & l l o l g e y C Cell & Developmental Biology Berois, et al., Cell Dev Biol 2014, 3:2 ISSN: 2168-9296 DOI: 10.4172/2168-9296.1000136 Review Article Open Access The Neotropical Genus Austrolebias: An Emerging Model of Annual Killifishes Nibia Berois1, Maria J. Arezo1 and Rafael O. de Sá2* 1Departamento de Biologia Celular y Molecular, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay 2Department of Biology, University of Richmond, Richmond, Virginia, USA *Corresponding author: Rafael O. de Sá, Department of Biology, University of Richmond, Richmond, Virginia, USA, Tel: 804-2898542; Fax: 804-289-8233; E-mail: [email protected] Rec date: Apr 17, 2014; Acc date: May 24, 2014; Pub date: May 27, 2014 Copyright: © 2014 Rafael O. de Sá, et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life. Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the key to the survival of the species. -
Draft Risk Assessment Report Nothobranchius Furzeri (Turquoise
APPLICATION TO AMEND THE LIST OF SPECIMENS SUITABLE FOR LIVE IMPORT Draft Risk Assessment Report 1. Taxonomy of the species a. Family name: Aplocheilidae b. Genus name: Nothobranchius c. Species: N. furzeri d. Subspecies: No e. Taxonomic Reference: http://www.uniprot.org/taxonomy/105023 f. Common Names: Turquoise killifish g. Is the species a genetically-modified organism (GMO)? No 2. Status of the species under CITES Species is not listed in the CITES Appendices. 3. Ecology of the species a. Longevity: what is the average lifespan of the species in the wild and in captivity? The average lifespan of the species in captivity is 13 weeks (1). Wild derived N. furzeri from three different habitats showed a maximum lifespan of 25-32 weeks (1). b. What is the maximum length and weight that the species attains? Provide information on the size and weight range for males and females of the species. As per the original formal description of the species, the standard length of N. furzeri from a wild population ranged from 2.5cm to 4.4cm (2). The maximum length the species can attain is 7cm (3). The mean maximal body weight reported for males is 3.8 ± 1.1 g (range: 0.5 – 6.7 g) and 2.2 ± 0.6 g (range: 0.2 - 3.6 g) for females (4). Growth rates of Nothobranchius in the wild have been reported to be similar to those in captivity (5). c. Discuss the identification of the individuals in this species, including if the sexes of the species are readily distinguishable, and if the species is difficult to distinguish from other species. -
Resolving Cypriniformes Relationships Using an Anchored Enrichment Approach Carla C
Stout et al. BMC Evolutionary Biology (2016) 16:244 DOI 10.1186/s12862-016-0819-5 RESEARCH ARTICLE Open Access Resolving Cypriniformes relationships using an anchored enrichment approach Carla C. Stout1*†, Milton Tan1†, Alan R. Lemmon2, Emily Moriarty Lemmon3 and Jonathan W. Armbruster1 Abstract Background: Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp). Results: Concatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae. Conclusions: Most major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited. Keywords: Fish, High-throughput -
01 Astyanax Final Version.Indd
Vertebrate Zoology 59 (1) 2009 31 31 – 40 © Museum für Tierkunde Dresden, ISSN 1864-5755, 29.05.2009 Osteology of the African annual killifi sh genus Callopanchax (Teleostei: Cyprinodontiformes: Nothobranchiidae) and phylogenetic implications WILSON J. E. M. COSTA Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro, Caixa Postal 68049, CEP 21944-970, Rio de Janeiro, Brazil E-mail: wcosta(at)acd.ufrj.br Received on May 5, 2008, accepted on October 6, 2008. Published online at www.vertebrate-zoology.de on May 15, 2009. > Abstract Osteological structures of Callopanchax are fi rst described and illustrated. Twenty-six characters derived from comparisons of osseous structures among some aplocheiloid fi shes provided evidence supporting hypotheses of relationships among three western African genera (Callopanchax, Scriptaphyosemion and Archiaphyosemion), as proposed in recent molecular analysis. The clade comprising Callopanchax, Scriptaphyosemion and Archiaphyosemion is supported by a laterally displaced antero-proximal process of the fourth ceratobranchial. The sister group relationship between Callopanchax and Scriptaphyosemion is supported by a constriction on the posterior portion of the parasphenoid, an anterior expansion of the hyomandibula, a rectangular basihyal cartilage, an anterior pointed process on the fi rst vertebra, and a long ventrally directed hemal prezygapophysis on the preural centrum 2. Monophyly of Callopanchax is supported by a convexity on the dorsal margin of the opercle, a long interarcual cartilage, and long neural prezygapophyses on the anterior caudal vertebrae. > Key words Killifi shes, Callopanchax, Africa, Osteology, Annual fi shes. Introduction COSTA, 1998a, 2004) and among genera and species of the Rivulidae (e. g., COSTA, 1998b, 2005, 2006a, b). -
The Origin and Biogeographic Diversification of Fishes in the Family Poeciliidae
RESEARCH ARTICLE The origin and biogeographic diversification of fishes in the family Poeciliidae David N. Reznick1*, Andrew I. Furness2, Robert W. Meredith3, Mark S. Springer1 1 Department of Biology, University of California Riverside, Riverside, California, United States of America, 2 Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, United States of America, 3 Department of Biology and Molecular Biology, Montclair State University, Montclair, New Jersey, United States of America * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 a1111111111 The fish subfamily Poeciliinae (sensu Parenti, 1981) is widely distributed across the West- ern Hemisphere and a dominant component of the fish communities of Central America. Poeciliids have figured prominently in previous studies on the roles of dispersal and vicari- ance in shaping current geographic distributions. Most recently, Hrbek et al. combined a OPEN ACCESS DNA-based phylogeny of the family with geological models to provide a biogeographic per- spective that emphasized the role of both vicariance and dispersal. Here we expand on that Citation: Reznick DN, Furness AI, Meredith RW, Springer MS (2017) The origin and biogeographic effort with a database enlarged in the quantity of sequence represented per species, in the diversification of fishes in the family Poeciliidae. number of species included, and in an enlarged and more balanced representation of the PLoS ONE 12(3): e0172546. doi:10.1371/journal. order Cyprinodontiformes. We combine a robust timetree based upon multiple fossil calibra- pone.0172546 tions with enhanced biogeographic analyses that include ancestral area reconstructions to Editor: Axel Meyer, University of Konstanz, provide a detailed biogeographic history of this clade.