Ageing Research Reviews Revamping the Evolutionary
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Insights from the Molecular Docking of Withanolide Derivatives to The
open access www.bioinformation.net Hypothesis Volume 10(9) The conserved mitochondrial gene distribution in relatives of Turritopsis nutricula, an immortal jellyfish Pratap Devarapalli1, 2, Ranjith N. Kumavath1*, Debmalya Barh3 & Vasco Azevedo4 1Department of Genomic Science, Central University of Kerala, Riverside Transit Campus, Opp: Nehru College of Arts and Science, NH 17, Padanakkad, Nileshwer, Kasaragod, Kerala-671328, INDIA; 2Genomics & Molecular Medicine Unit, Institute of Genomics and Integrative Biology Council of Scientific and Industrial Research, Mathura Road, New Delhi-110025, INDIA; 3Centre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, PurbaMedinipur, West Bengal-721172, INDIA; 4Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais. MG, Brazil; Ranjith N. Kumavath - Email: [email protected]; *Corresponding author Received August 14, 2014; Accepted August 16, 2014; Published September 30, 2014 Abstract: Turritopsis nutricula (T. nutricula) is the one of the known reported organisms that can revert its life cycle to the polyp stage even after becoming sexually mature, defining itself as the only immortal organism in the animal kingdom. Therefore, the animal is having prime importance in basic biological, aging, and biomedical researches. However, till date, the genome of this organism has not been sequenced and even there is no molecular phylogenetic study to reveal its close relatives. Here, using phylogenetic analysis based on available 16s rRNA gene and protein sequences of Cytochrome oxidase subunit-I (COI or COX1) of T. nutricula, we have predicted the closest relatives of the organism. While we found Nemopsis bachei could be closest organism based on COX1 gene sequence; T. dohrnii may be designated as the closest taxon to T. -
Geoducks—A Compendium
34, NUMBER 1 VOLUME JOURNAL OF SHELLFISH RESEARCH APRIL 2015 JOURNAL OF SHELLFISH RESEARCH Vol. 34, No. 1 APRIL 2015 JOURNAL OF SHELLFISH RESEARCH CONTENTS VOLUME 34, NUMBER 1 APRIL 2015 Geoducks — A compendium ...................................................................... 1 Brent Vadopalas and Jonathan P. Davis .......................................................................................... 3 Paul E. Gribben and Kevin G. Heasman Developing fisheries and aquaculture industries for Panopea zelandica in New Zealand ............................... 5 Ignacio Leyva-Valencia, Pedro Cruz-Hernandez, Sergio T. Alvarez-Castaneda,~ Delia I. Rojas-Posadas, Miguel M. Correa-Ramırez, Brent Vadopalas and Daniel B. Lluch-Cota Phylogeny and phylogeography of the geoduck Panopea (Bivalvia: Hiatellidae) ..................................... 11 J. Jesus Bautista-Romero, Sergio Scarry Gonzalez-Pel aez, Enrique Morales-Bojorquez, Jose Angel Hidalgo-de-la-Toba and Daniel Bernardo Lluch-Cota Sinusoidal function modeling applied to age validation of geoducks Panopea generosa and Panopea globosa ................. 21 Brent Vadopalas, Jonathan P. Davis and Carolyn S. Friedman Maturation, spawning, and fecundity of the farmed Pacific geoduck Panopea generosa in Puget Sound, Washington ............ 31 Bianca Arney, Wenshan Liu, Ian Forster, R. Scott McKinley and Christopher M. Pearce Temperature and food-ration optimization in the hatchery culture of juveniles of the Pacific geoduck Panopea generosa ......... 39 Alejandra Ferreira-Arrieta, Zaul Garcıa-Esquivel, Marco A. Gonzalez-G omez and Enrique Valenzuela-Espinoza Growth, survival, and feeding rates for the geoduck Panopea globosa during larval development ......................... 55 Sandra Tapia-Morales, Zaul Garcıa-Esquivel, Brent Vadopalas and Jonathan Davis Growth and burrowing rates of juvenile geoducks Panopea generosa and Panopea globosa under laboratory conditions .......... 63 Fabiola G. Arcos-Ortega, Santiago J. Sanchez Leon–Hing, Carmen Rodriguez-Jaramillo, Mario A. -
Improving the NEFSC Clam Survey for Atlantic Surfclams and Ocean Quahogs
Northeast Fisheries Science Center Reference Document 19-06 Improving the NEFSC Clam Survey for Atlantic Surfclams and Ocean Quahogs by Larry Jacobson and Daniel Hennen May 2019 Northeast Fisheries Science Center Reference Document 19-06 Improving the NEFSC Clam Survey for Atlantic Surfclams and Ocean Quahogs by Larry Jacobson and Daniel Hennen NOAA Fisheries, Northeast Fisheries Science Center, 166 Water Street, Woods Hole, MA 02543 U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Northeast Fisheries Science Center Woods Hole, Massachusetts May 2019 Northeast Fisheries Science Center Reference Documents This series is a secondary scientific seriesdesigned to assure the long-term documentation and to enable the timely transmission of research results by Center and/or non-Center researchers, where such results bear upon the research mission of the Center (see the outside back cover for the mission statement). These documents receive internal scientific review, and most receive copy editing. The National Marine Fisheries Service does not endorse any proprietary material, process, or product mentioned in these documents. If you do not have Internet access, you may obtain a paper copy of a document by contacting the senior Center author of the desired document. Refer to the title page of the document for the senior Center author’s name and mailing address. If there is no Center author, or if there is corporate (i.e., non-individualized) authorship, then contact the Center’s Woods Hole Labora- tory Library (166 Water St., Woods Hole, MA 02543-1026). Information Quality Act Compliance: In accordance with section 515 of Public Law 106-554, the Northeast Fisheries Science Center completed both technical and policy reviews for this report. -
The Effects of Environment on Arctica Islandica Shell Formation and Architecture
Biogeosciences, 14, 1577–1591, 2017 www.biogeosciences.net/14/1577/2017/ doi:10.5194/bg-14-1577-2017 © Author(s) 2017. CC Attribution 3.0 License. The effects of environment on Arctica islandica shell formation and architecture Stefania Milano1, Gernot Nehrke2, Alan D. Wanamaker Jr.3, Irene Ballesta-Artero4,5, Thomas Brey2, and Bernd R. Schöne1 1Institute of Geosciences, University of Mainz, Joh.-J.-Becherweg 21, 55128 Mainz, Germany 2Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany 3Department of Geological and Atmospheric Sciences, Iowa State University, Ames, Iowa 50011-3212, USA 4Royal Netherlands Institute for Sea Research and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, the Netherlands 5Department of Animal Ecology, VU University Amsterdam, Amsterdam, the Netherlands Correspondence to: Stefania Milano ([email protected]) Received: 27 October 2016 – Discussion started: 7 December 2016 Revised: 1 March 2017 – Accepted: 4 March 2017 – Published: 27 March 2017 Abstract. Mollusks record valuable information in their hard tribution, and (2) scanning electron microscopy (SEM) was parts that reflect ambient environmental conditions. For this used to detect changes in microstructural organization. Our reason, shells can serve as excellent archives to reconstruct results indicate that A. islandica microstructure is not sen- past climate and environmental variability. However, animal sitive to changes in the food source and, likely, shell pig- physiology and biomineralization, which are often poorly un- ment are not altered by diet. However, seawater temperature derstood, can make the decoding of environmental signals had a statistically significant effect on the orientation of the a challenging task. -
Clark2019.Pdf (4.792Mb)
This thesis has been submitted in fulfilment of the requirements for a postgraduate degree (e.g. PhD, MPhil, DClinPsychol) at the University of Edinburgh. Please note the following terms and conditions of use: This work is protected by copyright and other intellectual property rights, which are retained by the thesis author, unless otherwise stated. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given. Model Organisms to Models: How Ageing Affects Infectious Disease Dynamics Jessica Clark A thesis submitted for the degree of Doctor of Philosophy The University of Edinburgh 2019 Declaration I declare that this thesis has been composed by myself and that the work has not been submitted for any other degree or professional qualification. I confirm that the work submitted is my own, except where work which has formed part of jointly-authored publications has been included. My contribution and those of the other authors to this work have been explicitly indicated below. I confirm that appropriate credit has been given within this thesis where reference has been made to the work of others. The work presented in Chapter 2 was previously published in Ecology Letters as Disease Spread in Age Structured Populations with Maternal Age Effects by Jessica Clark (Author of Declaration & Student), Jenny Garbutt (Research Group Member), Luke McNally (Collaborator) & Tom Little (Primary Supervisor). -
Hydrozoan Insights in Animal Development and Evolution Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston
Hydrozoan insights in animal development and evolution Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston To cite this version: Lucas Leclère, Richard Copley, Tsuyoshi Momose, Evelyn Houliston. Hydrozoan insights in animal development and evolution. Current Opinion in Genetics and Development, Elsevier, 2016, Devel- opmental mechanisms, patterning and evolution, 39, pp.157-167. 10.1016/j.gde.2016.07.006. hal- 01470553 HAL Id: hal-01470553 https://hal.sorbonne-universite.fr/hal-01470553 Submitted on 17 Feb 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Current Opinion in Genetics and Development 2016, 39:157–167 http://dx.doi.org/10.1016/j.gde.2016.07.006 Hydrozoan insights in animal development and evolution Lucas Leclère, Richard R. Copley, Tsuyoshi Momose and Evelyn Houliston Sorbonne Universités, UPMC Univ Paris 06, CNRS, Laboratoire de Biologie du Développement de Villefranche‐sur‐mer (LBDV), 181 chemin du Lazaret, 06230 Villefranche‐sur‐mer, France. Corresponding author: Leclère, Lucas (leclere@obs‐vlfr.fr). Abstract The fresh water polyp Hydra provides textbook experimental demonstration of positional information gradients and regeneration processes. Developmental biologists are thus familiar with Hydra, but may not appreciate that it is a relatively simple member of the Hydrozoa, a group of mostly marine cnidarians with complex and diverse life cycles, exhibiting extensive phenotypic plasticity and regenerative capabilities. -
Intercellular Competition and the Inevitability of Multicellular Aging
Intercellular competition and the inevitability of multicellular aging Paul Nelsona,1 and Joanna Masela aDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721 Edited by Raghavendra Gadagkar, Indian Institute of Science, Bangalore, India, and approved October 6, 2017 (received for review November 14, 2016) Current theories attribute aging to a failure of selection, due to Aging in multicellular organisms occurs at both the cellular either pleiotropic constraints or declining strength of selection and intercellular levels (17). Multicellular organisms, by definition, after the onset of reproduction. These theories implicitly leave require a high degree of intercellular cooperation to maintain open the possibility that if senescence-causing alleles could be homeostasis. Often, cellular traits required for producing a viable identified, or if antagonistic pleiotropy could be broken, the multicellular phenotype come at a steep cost to individual cells effects of aging might be ameliorated or delayed indefinitely. (14, 18, 19). Conversely, many mutant cells that do not invest in These theories are built on models of selection between multicel- holistic organismal fitness have a selective advantage over cells lular organisms, but a full understanding of aging also requires that do. If intercellular competition occurs, such “cheater” or examining the role of somatic selection within an organism. “defector” cells may proliferate and displace “cooperating” cells, Selection between somatic cells (i.e., intercellular competition) with detrimental consequences for the multicellular organism can delay aging by purging nonfunctioning cells. However, the (20, 21). Cancer, a leading cause of death in humans at rates that fitness of a multicellular organism depends not just on how increase with age, is one obvious manifestation of cheater pro- functional its individual cells are but also on how well cells work liferation (22–24). -
MOLLUSCS Species Names – for Consultation 1
MOLLUSCS species names – for consultation English name ‘Standard’ Gaelic name Gen Scientific name Notes Neologisms in italics der MOLLUSC moileasg m MOLLUSCS moileasgan SEASHELL slige mhara f SEASHELLS sligean mara SHELLFISH (singular) maorach m SHELLFISH (plural) maoraich UNIVALVE SHELLFISH aon-mhogalach m (singular) UNIVALVE SHELLFISH aon-mhogalaich (plural) BIVALVE SHELLFISH dà-mhogalach m (singular) BIVALVE SHELLFISH dà-mhogalaich (plural) LIMPET (general) bàirneach f LIMPETS bàirnich common limpet bàirneach chumanta f Patella vulgata ‘common limpet’ slit limpet bàirneach eagach f Emarginula fissura ‘notched limpet’ keyhole limpet bàirneach thollta f Diodora graeca ‘holed limpet’ china limpet bàirneach dhromanach f Patella ulyssiponensis ‘ridged limpet’ blue-rayed limpet copan Moire m Patella pellucida ‘The Virgin Mary’s cup’ tortoiseshell limpet bàirneach riabhach f Testudinalia ‘brindled limpet’ testudinalis white tortoiseshell bàirneach bhàn f Tectura virginea ‘fair limpet’ limpet TOP SHELL brùiteag f TOP SHELLS brùiteagan f painted top brùiteag dhotamain f Calliostoma ‘spinning top shell’ zizyphinum turban top brùiteag thurbain f Gibbula magus ‘turban top shell’ grey top brùiteag liath f Gibbula cineraria ‘grey top shell’ flat top brùiteag thollta f Gibbula umbilicalis ‘holed top shell’ pheasant shell slige easaig f Tricolia pullus ‘pheasant shell’ WINKLE (general) faochag f WINKLES faochagan f banded chink shell faochag chlaiseach bhannach f Lacuna vincta ‘banded grooved winkle’ common winkle faochag chumanta f Littorina littorea ‘common winkle’ rough winkle (group) faochag gharbh f Littorina spp. ‘rough winkle’ small winkle faochag bheag f Melarhaphe neritoides ‘small winkle’ flat winkle (2 species) faochag rèidh f Littorina mariae & L. ‘flat winkle’ 1 MOLLUSCS species names – for consultation littoralis mudsnail (group) seilcheag làthaich f Fam. -
111 Turritopsis Dohrnii Primarily from Wikipedia, the Free Encyclopedia
Turritopsis dohrnii Primarily from Wikipedia, the free encyclopedia (https://en.wikipedia.org/wiki/Dark_matter) Mark Herbert, PhD World Development Institute 39 Main Street, Flushing, Queens, New York 11354, USA, [email protected] Abstract: Turritopsis dohrnii, also known as the immortal jellyfish, is a species of small, biologically immortal jellyfish found worldwide in temperate to tropic waters. It is one of the few known cases of animals capable of reverting completely to a sexually immature, colonial stage after having reached sexual maturity as a solitary individual. Others include the jellyfish Laodicea undulata and species of the genus Aurelia. [Mark Herbert. Turritopsis dohrnii. Stem Cell 2020;11(4):111-114]. ISSN: 1945-4570 (print); ISSN: 1945-4732 (online). http://www.sciencepub.net/stem. 5. doi:10.7537/marsscj110420.05. Keywords: Turritopsis dohrnii; immortal jellyfish, biologically immortal; animals; sexual maturity Turritopsis dohrnii, also known as the immortal without reverting to the polyp form.[9] jellyfish, is a species of small, biologically immortal The capability of biological immortality with no jellyfish[2][3] found worldwide in temperate to tropic maximum lifespan makes T. dohrnii an important waters. It is one of the few known cases of animals target of basic biological, aging and pharmaceutical capable of reverting completely to a sexually immature, research.[10] colonial stage after having reached sexual maturity as The "immortal jellyfish" was formerly classified a solitary individual. Others include the jellyfish as T. nutricula.[11] Laodicea undulata [4] and species of the genus Description Aurelia.[5] The medusa of Turritopsis dohrnii is bell-shaped, Like most other hydrozoans, T. dohrnii begin with a maximum diameter of about 4.5 millimetres their life as tiny, free-swimming larvae known as (0.18 in) and is about as tall as it is wide.[12][13] The planulae. -
Shelled Molluscs
Encyclopedia of Life Support Systems (EOLSS) Archimer http://www.ifremer.fr/docelec/ ©UNESCO-EOLSS Archive Institutionnelle de l’Ifremer Shelled Molluscs Berthou P.1, Poutiers J.M.2, Goulletquer P.1, Dao J.C.1 1 : Institut Français de Recherche pour l'Exploitation de la Mer, Plouzané, France 2 : Muséum National d’Histoire Naturelle, Paris, France Abstract: Shelled molluscs are comprised of bivalves and gastropods. They are settled mainly on the continental shelf as benthic and sedentary animals due to their heavy protective shell. They can stand a wide range of environmental conditions. They are found in the whole trophic chain and are particle feeders, herbivorous, carnivorous, and predators. Exploited mollusc species are numerous. The main groups of gastropods are the whelks, conchs, abalones, tops, and turbans; and those of bivalve species are oysters, mussels, scallops, and clams. They are mainly used for food, but also for ornamental purposes, in shellcraft industries and jewelery. Consumed species are produced by fisheries and aquaculture, the latter representing 75% of the total 11.4 millions metric tons landed worldwide in 1996. Aquaculture, which mainly concerns bivalves (oysters, scallops, and mussels) relies on the simple techniques of producing juveniles, natural spat collection, and hatchery, and the fact that many species are planktivores. Keywords: bivalves, gastropods, fisheries, aquaculture, biology, fishing gears, management To cite this chapter Berthou P., Poutiers J.M., Goulletquer P., Dao J.C., SHELLED MOLLUSCS, in FISHERIES AND AQUACULTURE, from Encyclopedia of Life Support Systems (EOLSS), Developed under the Auspices of the UNESCO, Eolss Publishers, Oxford ,UK, [http://www.eolss.net] 1 1. -
TRANSDIFFERENTATION in Turritopsis Dohrnii (IMMORTAL JELLYFISH)
TRANSDIFFERENTATION IN Turritopsis dohrnii (IMMORTAL JELLYFISH): MODEL SYSTEM FOR REGENERATION, CELLULAR PLASTICITY AND AGING A Thesis by YUI MATSUMOTO Submitted to the Office of Graduate and Professional Studies of Texas A&M University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Chair of Committee, Maria Pia Miglietta Committee Members, Jaime Alvarado-Bremer Anja Schulze Noushin Ghaffari Intercollegiate Faculty Chair, Anna Armitage December 2017 Major Subject: Marine Biology Copyright 2017 Yui Matsumoto ABSTRACT Turritopsis dohrnii (Cnidaria, Hydrozoa) undergoes life cycle reversal to avoid death caused by physical damage, adverse environmental conditions, or aging. This unique ability has granted the species the name, the “Immortal Jellyfish”. T. dohrnii exhibits an additional developmental stage to the typical hydrozoan life cycle which provides a new paradigm to further understand regeneration, cellular plasticity and aging. Weakened jellyfish will undergo a whole-body transformation into a cluster of uncharacterized tissue (cyst stage) and then metamorphoses back into an earlier life cycle stage, the polyp. The underlying cellular processes that permit its reverse development is called transdifferentiation, a mechanism in which a fully mature and differentiated cell can switch into a new cell type. It was hypothesized that the unique characteristics of the cyst would be mirrored by differential gene expression patterns when compared to the jellyfish and polyp stages. Specifically, it was predicted that the gene categories exhibiting significant differential expression may play a large role in the reverse development and transdifferentiation in T. dohrnii. The polyp, jellyfish and cyst stage of T. dohrnii were sequenced through RNA- sequencing, and the transcriptomes were assembled de novo, and then annotated to create the gene expression profile of each stage. -
Growth Increment Periodicity in the Shell of the Razor Clam Ensis
EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Open Access Biogeosciences, 10, 4741–4750, 2013 Open Access www.biogeosciences.net/10/4741/2013/ Biogeosciences doi:10.5194/bg-10-4741-2013 Biogeosciences Discussions © Author(s) 2013. CC Attribution 3.0 License. Open Access Open Access Climate Climate of the Past of the Past Discussions Growth increment periodicity in the shell of the razor clam Ensis Open Access Open Access directus using stable isotopes as a method to validateEarth age System Earth System Dynamics 1,2 1 1 1 Dynamics2,3 J. F. M. F. Cardoso , G. Nieuwland , R. Witbaard , H. W. van der Veer , and J. P. Machado Discussions 1NIOZ – Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB Den Burg Texel, the Netherlands 2CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Rua dos Open Access Open Access Bragas 289, 4050-123 Porto, Portugal Geoscientific Geoscientific 3ICBAS – Instituto de Cienciasˆ Biomedicas´ Abel Salazar, Laboratorio de Fisiologia Aplicada,Instrumentation Universidade do Porto, Instrumentation Rua de Jorge Viterbo Ferreira 228, 4050-313 Porto, Portugal Methods and Methods and Correspondence to: J. F. M. F. Cardoso ([email protected]) Data Systems Data Systems Discussions Open Access Received: 18 February 2013 – Published in Biogeosciences Discuss.: 6 March 2013 Open Access Geoscientific Revised: 31 May 2013 – Accepted: 8 June 2013 – Published: 15 July 2013 Geoscientific Model Development Model Development Discussions Abstract.