Arbuscular Mycorrhizal Community Structure on Three Co
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View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UDORA - University of Derby Online Research Archive 1 Arbuscular mycorrhizal community 2 structure on co-existing tropical legume 3 trees in French Guiana 4 5 Francis Q. Brearley1, David R. Elliott1,3, Amaia Iribar2 & Robin 6 Sen1 7 8 1) School of Science and the Environment, Manchester Metropolitan University, Chester 9 Street, Manchester, M1 5GD, UK [email protected]. 2) Laboratoire Evolution et 10 Diversité Biologique, UMR 5174 CNRS, University Toulouse III, Toulouse, France. 3) 11 Current Address: Environmental Sustainability Research Centre, College of Life and 12 Natural Sciences, University of Derby, Derby, DE22 1GB, UK. 13 14 Abstract 15 Aims: We aimed to characterise the arbuscular mycorrhizal fungal (AMF) 16 community structure and potential edaphic determinants in the 17 dominating, but poorly described, root-colonizing Paris-type AMF 18 community on co-occurring Amazonian leguminous trees. 19 Methods: We targeted three highly productive leguminous trees 20 (Dicorynia guianensis, Eperua falcata and Tachigali melinonii) in species- 21 rich forests on contrasting soil types at the Nouragues Research Station in 22 central French Guiana. Abundant AMF SSU rRNA amplicons (NS31-AM1 & 23 AML1-AML2 primers) from roots identified via trnL profiling were subjected 24 to denaturing gradient gel electrophoresis (DGGE), clone library 25 sequencing and phylogenetic analysis. 26 Results: Classical approaches targeting abundant SSU amplicons 27 highlighted a diverse root-colonizing symbiotic AMF community dominated 28 by members of the Glomeraceae. DGGE profiling indicated that, of the 29 edaphic factors investigated, soil nitrogen was most important in 30 influencing the AMF community and this was more important than any 31 host tree species effect. 32 Conclusions: Dominating Paris-type mycorrhizal leguminous trees in 33 Amazonian soils host diverse and novel taxa within the Glomeraceae that 34 appear under edaphic selection in the investigated tropical forests. 35 Linking symbiotic diversity of identified AMF taxa to ecological processes 36 is the next challenge ahead. 37 38 Introduction 39 Tropical forests are exceptionally species rich, holding over half the 40 world’s species (Dirzo & Raven 2003; Gibson et al. 2011). Most 41 ecological studies in tropical forests have examined above-ground 42 communities (Ghazoul & Sheil 2010) whilst microscopic taxa found 43 below-ground such as fungi and bacteria have received considerably 44 less attention, at least partly due to their cryptic nature (Aime & 45 Brearley 2011). Compared to other microscopic taxa, arbuscular 46 mycorrhizal fungi (AMF; phylum Glomeromycota) have been 47 relatively well studied. These fungi form beneficial root symbiotic 48 associations, defined by fungal arbuscular structures formed within 49 host cortical cells, in a large proportion of the world’s terrestrial flora 50 (Smith & Read 2008) including many of the more than 20,000 tree 51 species estimated from Neotropical forests (Slik et al. 2015). 52 However, classical morphological descriptions by Gallaud (1904) and 53 numerous subsequent studies, reviewed by Smith and Smith (1997), 54 confirmed that AMF form both Arum- and Paris-type colonization 55 structures in compatible mycorrhizal plant hosts. The former are 56 characterised as typical AMF but, in the latter, root cortical cells do 57 not host arbuscules but are heavily colonized by intracellular hyphal 58 coils. Tropical forest trees and herbs appear to host a predominance 59 of Paris-type mycorrhizas (Alexander 1989) including the target 60 leguminous trees at our Amazonian study site in French Guiana 61 (Béreau & Garbaye 1994; Béreau et al. 2004; de Grandcourt et al. 62 2004). Whilst it appears that AMF alpha-diversity can be higher in 63 tropical than temperate studies (Husband et al. 2002; Haug et al. 64 2010, 2013; Camenzind et al. 2014), this is not always the case with 65 overlap shown in the number of AMF taxa recorded from these 66 divergent ecosystems. It is, however, difficult to make robust 67 comparisons due to the paucity of tropical studies coupled with 68 inconsistent methodologies, particularly as the field of molecular 69 ecology advances (e.g. next generation sequencing; Shendure & Ji 70 2008). 71 72 Because mycorrhizal fungi form a key functional interface between 73 plant roots and soil, they play a major role in plant nutrition (Smith & 74 Read 2008). Leguminous plants and trees also host symbiotic 75 nitrogen-fixing bacteria that require large amounts of phosphorus (P) 76 for nodule development and nitrogenase functioning (e.g. Mortimer 77 et al. 2008 and references therein). Nitrogen (N) fixation in 78 leguminous plants in general and tropical trees in particular is 79 therefore highly dependent upon efficient P uptake, especially in P- 80 deficient tropical soils, which is mediated by the AMF symbiosis 81 (Plassard & Dell 2010). In addition, AMF are known to be important 82 in structuring plant communities with different taxa or associations 83 of taxa having differential effects on plant growth (van der Heijden 84 et al. 1998; Munkvold et al. 2004; Koch et al. 2006; Roger et al. 85 2013). For example, Kiers et al (2000) demonstrated differential 86 responses to AMF inoculum from conspecific or heterospecific 87 tropical tree seedlings and Pizano et al. (2011) found that AMF from 88 tropical landslide sites had differing effects on plant growth 89 compared to those from light-gap sites, both studies indicating the 90 potential role of AMF in influencing plant communities. 91 Understanding the determinants of species distributions, through 92 studying their niche requirements, and elucidating ecological 93 community structure is a fundamental area of research in ecology 94 and is important to support assessment of environmental change, 95 and inform evidence-based management of ecosystems. As AMF 96 are obligately symbiotic organisms, both the host species (Lovelock 97 et al. 2003; Helgason et al. 2007; Sýkorová et al. 2007; de Oliveira 98 Freitas et al. 2014) as well as edaphic (Fitzsimmons et al. 2008; Ji et 99 al. 2012; de Oliveira Freitas et al. 2014) and biogeographical (Hazard 100 et al 2011; Kivlin et al. 2011; Öpik et al. 2013) factors will influence 101 AMF community structure but, in many cases, it is difficult to clearly 102 disentangle these due to edaphic sorting of the host plant. 103 Surprisingly few studies have attempted to do this (but see 104 Fitzsimmons et al. 2008; Dumbrell et al. 2010; Ji et al. 2012) 105 although it would clearly help in furthering our understanding of AMF 106 community structuring. 107 108 In this study, we examined the root associated AMF fungal 109 community on three co-occurring leguminous tree species of French 110 Guiana where legumes form many of the commonest tree species, 111 making a significant contribution to stand basal area (ter Steege et 112 al. 2006). We hypothesised that: i) the Paris-mycorrhizal status of 113 the target legume tree species could result from colonization by 114 novel AMF taxa, ii) host tree and soil edaphic specific responses 115 would be detectible in root colonizing fungal communities but iii) the 116 co-ocurring trees would form a core AMF community with the 117 potential to form common mycelial networks. 118 119 Methods 120 Study site 121 The study was conducted at the Nouragues Research Station (within 122 a National Nature Reserve) in central French Guiana (Bongers et al. 123 2001; http://www.nouragues.cnrs.fr) with a diverse tree flora typical 124 of much of the Guiana Shield (ter Steege et al. 2006; Gonzalez et al. 125 2009). The sampling was restricted to the Inselberg camp area 126 (4°05’N; 52°41’W) in minimally disturbed tropical forest where two 127 large sampling plots (‘Grand Plateau’ and ‘Petit Plateau’) have been 128 delimited. These two plots have differing edaphic conditions: the 129 Grand Plateau is based on metamorphic geology with more fertile 130 clay-rich soils and the Petit Plateau is based on granitic geology with 131 more sandy soils that are less fertile, although both are Ultisols 132 (Poszwa et al. 2009). The annual rainfall is around 2900 mm with a 133 drier season from late August to early November. 134 135 Study species 136 We investigated three legume species in different tribes of the 137 Caesalpinioideae: Dicorynia guianensis Amshoff (tribe Cassieae), 138 Tachigali melinonii (Harms) Zarucchi & Herend. (syn. Sclerolobium 139 melinonii Harms; tribe Caesalpinieae) and Eperua falcata Aublet 140 (tribe Detarieae). The former two species are among the most 141 important trees, in terms of carbon cycling, in the Amazon basin 142 (Fauset et al. 2015). The three species have contrasting root 143 morphologies with Dicorynia guianensis and Tachigali melinonii 144 being similar to one another with thin, highly branched roots in 145 contrast to Eperua falcata that has thicker, poorly branching root 146 systems with short roots on long axes (Béreau & Garbaye 1994). All 147 three species form Paris-type mycorrhizal associations (Béreau & 148 Garbaye 1994; Béreau et al. 2004; de Grandcourt et al. 2004). Many 149 Caesalp legumes possess ectomycorrhizal (EcM) associations (Smith 150 & Read 2008) but following a careful visual assessment of sampled 151 roots, no obvious EcM development was observed. Dicorynia 152 guianensis and Tachigali melinonii form prominent nodules and 153 Eperua falcata has nodule-like structures on the roots whose 154 function is not entirely clear (Sprent 2001). 155 156 Field sampling 157 Root samples were obtained from 12-16 randomly selected trees of 158 each of the three target species in August and September 2009 159 (trees were up to 1 m diameter; mean = 50.3 ± SD 20.3 cm). At 160 each tree, roots were exposed by careful excavation enabling them 161 to be traced to a distance of about 1.0 to 1.5 m from the trunk.