Soil and Litter Invertebrates and Heterotrophic Process: 1997 Revision
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Tillage and Soil Ecology: Partners for Sustainable Agriculture
Soil & Tillage Research 111 (2010) 33–40 Contents lists available at ScienceDirect Soil & Tillage Research journal homepage: www.elsevier.com/locate/still Review Tillage and soil ecology: Partners for sustainable agriculture Jean Roger-Estrade a,b,*, Christel Anger b, Michel Bertrand b, Guy Richard c a AgroParisTech, UMR 211 INRA/AgroParisTech., Thiverval-Grignon, 78850, France b INRA, UMR 211 INRA/AgroParisTech. Thiverval-Grignon, 78850, France c INRA, UR 0272 Science du sol, Centre de recherche d’Orle´ans, Orle´ans, 45075, France ARTICLE INFO ABSTRACT Keywords: Much of the biodiversity of agroecosystems lies in the soil. The functions performed by soil biota have Tillage major direct and indirect effects on crop growth and quality, soil and residue-borne pests, diseases Soil ecology incidence, the quality of nutrient cycling and water transfer, and, thus, on the sustainability of crop Agroecosystems management systems. Farmers use tillage, consciously or inadvertently, to manage soil biodiversity. Soil biota Given the importance of soil biota, one of the key challenges in tillage research is understanding and No tillage Plowing predicting the effects of tillage on soil ecology, not only for assessments of the impact of tillage on soil organisms and functions, but also for the design of tillage systems to make the best use of soil biodiversity, particularly for crop protection. In this paper, we first address the complexity of soil ecosystems, the descriptions of which vary between studies, in terms of the size of organisms, the structure of food webs and functions. We then examine the impact of tillage on various groups of soil biota, outlining, through examples, the crucial effects of tillage on population dynamics and species diversity. -
Soil Fauna: Key to New Carbon Models Authors
SOIL Discuss., doi:10.5194/soil-2016-19, 2016 Manuscript under review for journal SOIL Published: 14 April 2016 c Author(s) 2016. CC-BY 3.0 License. 1 1 2 Soil fauna: key to new carbon models 3 4 Authors 5 6 Juliane Filser1*, Jack H. Faber2, Alexei V. Tiunov3, Lijbert Brussaard4, Jan Frouz5, 7 Gerlinde De Deyn4, Alexei V. Uvarov3, Matty P. Berg6, Patrick Lavelle7, Michel Loreau8, 8 Diana H. Wall9, Pascal Querner10, Herman Eijsackers11, Juan José Jiménez12 9 10 1Center for Environmental Research and Sustainable Technolgy, University of Bremen, General and Theoretical 11 Ecology, Leobener Str. – UFT, D-28359 Bremen, Germany. 12 email: [email protected] 13 * Corresponding author 14 15 2Alterra, Wageningen UR, Droevendaalsesteeg 3, 6708 PB Wageningen, The Netherlands 16 email: [email protected] 17 3Laboratory of Soil Zoology, Institute of Ecology & Evolution, Russian Academy of Sciences, Leninsky prospekt 33, 18 119071 Moscow, Russia 19 email: [email protected] 20 email: [email protected] 21 4Dept. of Soil Quality, Wageningen University, P.O. Box 47, 6700 AA Wageningen, The Netherlands 22 email: [email protected] 23 email: [email protected] 24 5Institute for Environmental Studies, Charles University in Prague, Faculty of Science, Benátská 2, 128 43 Praha 2, 25 Czech Republic 26 email: [email protected] 27 6Vrije Universiteit Amsterdam, Department of Ecological Science, De Boelelaan 1085, 1081 HV Amsterdam, The 28 Netherlands 29 email: [email protected] 30 7Université Pierre et Marie Curie, Centre IRD Ile de France, 32, rue H. Varagnat, 93143 Bondy Cedex, France 31 email: [email protected] 32 8Centre for Biodiversity Theory and Modelling, Station d'Ecologie Théorique et Expérimentale, UMR 5321 CNRS & 33 Université Paul Sabatier, 2, route du CNRS, 09200 Moulis, France 34 email: [email protected] 35 9School of Global Environmental Sustainability & Dept. -
Soil Fauna: Key to New Carbon Models
SOIL, 2, 565–582, 2016 www.soil-journal.net/2/565/2016/ doi:10.5194/soil-2-565-2016 SOIL © Author(s) 2016. CC Attribution 3.0 License. Soil fauna: key to new carbon models Juliane Filser1, Jack H. Faber2, Alexei V. Tiunov3, Lijbert Brussaard4, Jan Frouz5, Gerlinde De Deyn4, Alexei V. Uvarov3, Matty P. Berg6, Patrick Lavelle7, Michel Loreau8, Diana H. Wall9, Pascal Querner10, Herman Eijsackers11, and Juan José Jiménez12 1Center for Environmental Research and Sustainable Technology, University of Bremen, General and Theoretical Ecology, Leobener Str. – UFT, 28359 Bremen, Germany 2Wageningen Environmental Research (Alterra), P.O. Box 47, 6700 AA Wageningen, the Netherlands 3Laboratory of Soil Zoology, Institute of Ecology & Evolution, Russian Academy of Sciences, Leninsky prospekt 33, 119071 Moscow, Russia 4Dept. of Soil Quality, Wageningen University, P.O. Box 47, 6700 AA Wageningen, the Netherlands 5Institute for Environmental Studies, Charles University in Prague, Faculty of Science, Benátská 2, 128 43 Praha 2, Czech Republic 6Vrije Universiteit Amsterdam, Department of Ecological Science, De Boelelaan 1085, 1081 HV Amsterdam, the Netherlands 7Université Pierre et Marie Curie, Centre IRD Ile de France, 32, rue H. Varagnat, 93143 Bondy CEDEX, France 8Centre for Biodiversity Theory and Modelling, Station d’Ecologie Théorique et Expérimentale, UMR5321 – CNRS & Université Paul Sabatier, 2, route du CNRS, 09200 Moulis, France 9School of Global Environmental Sustainability & Dept. Biology, Colorado State University, Fort Collins, CO 80523-1036, USA 10University of Natural Resources and Life Sciences, Department of Integrated Biology and Biodiversity Research, Institute of Zoology, Gregor-Mendel-Straße 33, 1180 Vienna, Austria 11Wageningen University and Research Centre, P.O. -
Articles, and the Creation of New Soil Habitats in Other Scientific fields Who Also Made Early Contributions Through the Weathering of Rocks (Puente Et Al., 2004)
Editorial SOIL, 1, 117–129, 2015 www.soil-journal.net/1/117/2015/ doi:10.5194/soil-1-117-2015 SOIL © Author(s) 2015. CC Attribution 3.0 License. The interdisciplinary nature of SOIL E. C. Brevik1, A. Cerdà2, J. Mataix-Solera3, L. Pereg4, J. N. Quinton5, J. Six6, and K. Van Oost7 1Department of Natural Sciences, Dickinson State University, Dickinson, ND, USA 2Departament de Geografia, Universitat de València, Valencia, Spain 3GEA-Grupo de Edafología Ambiental , Departamento de Agroquímica y Medio Ambiente, Universidad Miguel Hernández, Avda. de la Universidad s/n, Edificio Alcudia, Elche, Alicante, Spain 4School of Science and Technology, University of New England, Armidale, NSW 2351, Australia 5Lancaster Environment Centre, Lancaster University, Lancaster, UK 6Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Tannenstrasse 1, 8092 Zurich, Switzerland 7Georges Lemaître Centre for Earth and Climate Research, Earth and Life Institute, Université catholique de Louvain, Louvain-la-Neuve, Belgium Correspondence to: J. Six ([email protected]) Received: 26 August 2014 – Published in SOIL Discuss.: 23 September 2014 Revised: – – Accepted: 23 December 2014 – Published: 16 January 2015 Abstract. The holistic study of soils requires an interdisciplinary approach involving biologists, chemists, ge- ologists, and physicists, amongst others, something that has been true from the earliest days of the field. In more recent years this list has grown to include anthropologists, economists, engineers, medical professionals, military professionals, sociologists, and even artists. This approach has been strengthened and reinforced as cur- rent research continues to use experts trained in both soil science and related fields and by the wide array of issues impacting the world that require an in-depth understanding of soils. -
Faunal Activities and Soil Processes : Adaptive Strategies That Determine
F Faunal Activities .and Soil Processes: Adaptive Strategies That Determine Ecosystem Function P . LAVELLE I . Summary ................................................. 93 II . Introduction ............................................... 94 III . The role of invertebrates in the soil system ....................... 96 N . Adaptive strategies of soil organisms: the sleeping beauty and the ecosystem engineers ........................................ 97 V . Microfauna: microbial regulation in micro-foodwebs ...............101 A . The composition of micro-foodwebs ........................ 101 B., Distribution and dispersal of microsites ..................... 103 C. Evidence for the functional importance of micro-foodwebs: effects on SOM dynamics ...................104 VI . Saprophagous arthropoda: the litter transformers ..................105 A . Niche .............................................. 105 B . Structures ............................................ 105 C. Effects on physical parameters of soil ...................... 106 D . SOM dynamics ....................................... 106 E. Effects on plant growth in microcosms ..................... 108 VII. Termites and earthworms: the ecosystem engineers ................108 A . Roles ............................................... 108 B . Effects on physical structure ............................. 109 C. Effects on SOM dynamics ............................... 115 D. Effects on plant growth ................................. 118 Vm . Conclusions ............................................. -
Low-Density Polyethylene Film Biodegradation Potential by Fungal Species from Thailand
Journal of Fungi Article Low-Density Polyethylene Film Biodegradation Potential by Fungal Species from Thailand Sarunpron Khruengsai 1, Teerapong Sripahco 1 and Patcharee Pripdeevech 1,2,* 1 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand; [email protected] (S.K.); [email protected] (T.S.) 2 Center of Chemical Innovation for Sustainability (CIS), Mae Fah Luang University, Chiang Rai 57100, Thailand * Correspondence: [email protected] Abstract: Accumulated plastic waste in the environment is a serious problem that poses an ecological threat. Plastic waste has been reduced by initiating and applying different alternative methods from several perspectives, including fungal treatment. Biodegradation of 30 fungi from Thailand were screened in mineral salt medium agar containing low-density polyethylene (LDPE) films. Diaporthe italiana, Thyrostroma jaczewskii, Collectotrichum fructicola, and Stagonosporopsis citrulli were found to grow significantly by culturing with LDPE film as the only sole carbon source compared to those obtained from Aspergillus niger. These fungi were further cultured in mineral salt medium broth containing LDPE film as the sole carbon source for 90 days. The biodegradation ability of these fungi was evaluated from the amount of CO2 and enzyme production. Different amounts of CO2 were released from D. italiana, T. jaczewskii, C. fructicola, S. citrulli, and A. niger culturing with LDPE film, ranging from 0.45 to 1.45, 0.36 to 1.22, 0.45 to 1.45, 0.33 to 1.26, and 0.37 to 1.27 g/L, respectively. These fungi were able to secrete a large amount of laccase enzyme compared to manganese peroxidase, and lignin peroxidase enzymes detected under the same conditions. -
Mycology Proficiency Testing Program
Mycology Proficiency Testing Program Test Event Critique January 2014 Table of Contents Mycology Laboratory 2 Mycology Proficiency Testing Program 3 Test Specimens & Grading Policy 5 Test Analyte Master Lists 7 Performance Summary 11 Commercial Device Usage Statistics 13 Mold Descriptions 14 M-1 Stachybotrys chartarum 14 M-2 Aspergillus clavatus 18 M-3 Microsporum gypseum 22 M-4 Scopulariopsis species 26 M-5 Sporothrix schenckii species complex 30 Yeast Descriptions 34 Y-1 Cryptococcus uniguttulatus 34 Y-2 Saccharomyces cerevisiae 37 Y-3 Candida dubliniensis 40 Y-4 Candida lipolytica 43 Y-5 Cryptococcus laurentii 46 Direct Detection - Cryptococcal Antigen 49 Antifungal Susceptibility Testing - Yeast 52 Antifungal Susceptibility Testing - Mold (Educational) 54 1 Mycology Laboratory Mycology Laboratory at the Wadsworth Center, New York State Department of Health (NYSDOH) is a reference diagnostic laboratory for the fungal diseases. The laboratory services include testing for the dimorphic pathogenic fungi, unusual molds and yeasts pathogens, antifungal susceptibility testing including tests with research protocols, molecular tests including rapid identification and strain typing, outbreak and pseudo-outbreak investigations, laboratory contamination and accident investigations and related environmental surveys. The Fungal Culture Collection of the Mycology Laboratory is an important resource for high quality cultures used in the proficiency-testing program and for the in-house development and standardization of new diagnostic tests. Mycology Proficiency Testing Program provides technical expertise to NYSDOH Clinical Laboratory Evaluation Program (CLEP). The program is responsible for conducting the Clinical Laboratory Improvement Amendments (CLIA)-compliant Proficiency Testing (Mycology) for clinical laboratories in New York State. All analytes for these test events are prepared and standardized internally. -
A Future for Soil Ecology ? Connecting the System Levels
Eur. J. Soil Biol. 37 (2001) 213−220 © 2001 Éditions scientifiques et médicales Elsevier SAS. All rights reserved S1164556301010871/FLA A future for soil ecology ? Connecting the system levels: moving from genomes to ecosystems Opening Lecture to the XIII ICSZ “Biodiversity of soil organisms and ecosystem functioning” Herman Eijsackers* Alterra Green World Research, POB 47 6700 AA Wageningen, The Netherlands and Institute for Ecological Studies, Vrije Universiteit Amsterdam, Netherlands Received 18 August 2000; accepted 23 July 2001 Abstract − As an introduction to the XIII ICSZ “Biodiversity of soil organisms and ecosystem functioning” the question is raised what contribution soil ecology has made to general ecology. Although the appearance of soil ecological papers in general ecological journals is limited, soil ecologists have had a major contribution to especially functional aspects of ecology like nutrient release and energy turnover mechanisms, perhaps partly due to the applied character of soil ecology. As a way forward it is suggested to unify further work and scientific discussions according to five research themes: 1. Combined spatial and temporal heterogeneity; 2. Scaling up from individual mobility via distribution patterns to bio-geography; 3. Structural and functional biodiversity: from gene- to ecosystem level; 4. Nutrient cycling/energy transfer at the micro- to macro-level; 5. Adaptability from bacteria to ecosystems: is there a mutual mechanism connecting genetic variation with ecosystems´ adaptive mechanisms? © 2001 Éditions scientifiques et médicales Elsevier SAS micro- and macro-scale connections / nutrient cycling / organism adaptability / soil ecology / spatial and temporal heterogeneity 1. INTRODUCTION 2000 to discuss the way forward in the 21st century (see for an overview [27]). -
Ecology and the Challenge of a Multifunctional Use of Soil
Ecology and the challenge of a multifunctional use of soil Patrick Lavelle(1) (1)Institut de Recherche pour le Développement, Centro Internacional de Agricultura Tropical (Instituto TSBF), Apartado aereo 6713, Cali, Colombia. E‑mail: [email protected] Abstract – Soil zoology and soil ecology have become very active fields of research since the early 1990s. A search in the ISI Web of Science databases showed a steady increase in publications about that theme over the last two decades, and 3,612 bibliographic references were found for that theme for the period of 2004 to 2008. The researches covered mostly soil environmental issues, toxicology and ecology. The issue of theoretical development in soil ecology is discussed, and arguments are presented against the idea that the soil ecology theory is deficient. Finally, the need for a general model of soil function and soil management is discussed and some options are presented to reach this goal. Index terms: auto organization, panarchy, soil ecology, soil zoology. Ecologia e o desafio do uso multifuncional do solo Resumo – A zoologia e a ecologia do solo tornaram-se áreas de pesquisa muito ativas a partir do início da década de 1990. Uma busca realizada na base de dados ISI Web of Science mostrou um gradual aumento no número de publicações sobre o assunto nas últimas duas décadas, tendo sido encontradas 3.612 referências bibliográficas para o período de 2004 a 2008. As pesquisas abordaram principalmente assuntos ambientais, toxicologia e ecologia. O desenvolvimento da teoria em ecologia do solo é discutido, e são apresentados argumentos contra a ideia de que existe deficiência na teoria em ecologia do solo. -
Role of Arthropods in Maintaining Soil Fertility
Agriculture 2013, 3, 629-659; doi:10.3390/agriculture3040629 OPEN ACCESS agriculture ISSN 2077-0472 www.mdpi.com/journal/agriculture Review Role of Arthropods in Maintaining Soil Fertility Thomas W. Culliney Plant Epidemiology and Risk Analysis Laboratory, Plant Protection and Quarantine, Center for Plant Health Science and Technology, USDA-APHIS, 1730 Varsity Drive, Suite 300, Raleigh, NC 27606, USA; E-Mail: [email protected]; Tel.: +1-919-855-7506; Fax: +1-919-855-7595 Received: 6 August 2013; in revised form: 31 August 2013 / Accepted: 3 September 2013 / Published: 25 September 2013 Abstract: In terms of species richness, arthropods may represent as much as 85% of the soil fauna. They comprise a large proportion of the meso- and macrofauna of the soil. Within the litter/soil system, five groups are chiefly represented: Isopoda, Myriapoda, Insecta, Acari, and Collembola, the latter two being by far the most abundant and diverse. Arthropods function on two of the three broad levels of organization of the soil food web: they are plant litter transformers or ecosystem engineers. Litter transformers fragment, or comminute, and humidify ingested plant debris, which is deposited in feces for further decomposition by micro-organisms, and foster the growth and dispersal of microbial populations. Large quantities of annual litter input may be processed (e.g., up to 60% by termites). The comminuted plant matter in feces presents an increased surface area to attack by micro-organisms, which, through the process of mineralization, convert its organic nutrients into simpler, inorganic compounds available to plants. Ecosystem engineers alter soil structure, mineral and organic matter composition, and hydrology. -
Research Article Random Mutagenesis of the Aspergillus Oryzae Genome Results in Fungal Antibacterial Activity
Hindawi Publishing Corporation International Journal of Microbiology Volume 2013, Article ID 901697, 5 pages http://dx.doi.org/10.1155/2013/901697 Research Article Random Mutagenesis of the Aspergillus oryzae Genome Results in Fungal Antibacterial Activity Cory A. Leonard,1 Stacy D. Brown,2 and J. Russell Hayman1 1 Department of Biomedical Sciences, James H. Quillen College of Medicine, East Tennessee State University, P.O. Box 70577, Johnson City, TN 37614, USA 2 Department of Pharmaceutical Sciences, Bill Gatton College of Pharmacy, East Tennessee State University, P.O. Box 70436, Johnson City, TN 37614, USA Correspondence should be addressed to J. Russell Hayman; [email protected] Received 30 April 2013; Revised 9 July 2013; Accepted 9 July 2013 Academic Editor: Joseph Falkinham Copyright © 2013 Cory A. Leonard et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Multidrug-resistant bacteria cause severe infections in hospitals and communities. Development of new drugs to combat resistant microorganisms is needed. Natural products of microbial origin are the source of most currently available antibiotics. We hypothesized that random mutagenesis of Aspergillus oryzae would result in secretion of antibacterial compounds. To address this hypothesis, we developed a screen to identify individual A. oryzae mutants that inhibit the growth of Methicillin- resistant Staphylococcus aureus (MRSA) in vitro. To randomly generate A. oryzae mutant strains, spores were treated with ethyl methanesulfonate (EMS). Over 3000 EMS-treated A. oryzae cultures were tested in the screen, and one isolate, CAL220, exhibited altered morphology and antibacterial activity. -
The Values of Soil Animals for Conservation Biology
Available online at www.sciencedirecl.com --" EUROPEAN JOURNAL Of -.;- ScienceDirect SOll BIOLOGY ELSEVIER European Journal of Soil Biology 42 (2006) S23-838 http://france.elsevier.comldirectlejsobi Original article The values of sail animaIs for conservation biology a b c b T. Decaëns ,*, II Jiménez , C. Gioia , G.J. Measeyb, P. Lavelle •Laboratoire d'écologie-ECOD/V, UPRES EA /293, université de Rouen, 76821 Mt Saint Aignan cedex, France b Laboratoire d'écologie des sols tropicaux, lRD, 32, Avenue Henri-Varagnat, 93143 Bondy cedex, France C Bureau d'élude AL/SE. 228, ZAC de la Forge-Seret, 76520 Boos, France Available online 21 July 2006 Abstract It has taken time for the international community to accept the idea of biodiversity values, a concept which had previously been restricted to the limited aesthetic and touristic aspects ofwildlife. This situation changed following the International Convention on Biodiversity in Rio de Janeiro (1992), which focussed on "the forgotten environmental problem" ofbiodiversity erosion and made the first clear reference to the values of living species. Biodiversity values refer to direct or indirect, economic or non-economic interest, a given species or ecosystem may represent for human populations. These values are generally split into intrinsic and instrumental (use) values, the last category itself being divided into direct and indirect economic values. Obviously, each of these values cames different weights, and cannot be considered as being weighted equally in terms of justification for species or ecosystem conservation. Soil is probably one ofthe most species-rich habitats of terrestrial ecosystems, especially if the defmition is extended to related habitats like vertebrate faeces, decaying wood, and humus ofhollow trees (i.e.