DEP-On-A-Chip: Dielectrophoresis Applied to Microfluidic Platforms
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Agarose Gel Electrophoresis
Laboratory for Environmental Pathogen Research Department of Environmental Sciences University of Toledo Agarose gel electrophoresis Background information Agarose gel electrophoresis of DNA is used to determine the presence and distinguish the type of nucleic acids obtained after extraction and to analyze restriction digestion products. Desired DNA fragments can be physically isolated for various purposes such as sequencing, probe preparation, or for cloning fragments into other vectors. Both agarose and polyacrylamide gels are used for DNA analysis. Agarose gels are usually run to size larger fragments (greater than 200 bp) and polyacrylamide gels are run to size fragments less than 200 bp. Typically agarose gels are used for most purposes and polyacrylamide gels are used when small fragments, such as digests of 16S rRNA genes, are being distinguished. There are also specialty agaroses made by FMC (e.g., Metaphor) for separating small fragments. Regular agarose gels may range in concentration from 0.6 to 3.0%. Pouring gels at less or greater than these percentages presents handling problems (e.g., 0.4% agarose for genomic DNA partial digests requires a layer of supporting 0.8% gel). For normal samples make agarose gels at 0.7%. The chart below illustrates the optimal concentrations for fragment size separation. The values listed are approximate and can vary depending on the reference that is used. If you do not know your fragment sizes then the best approach is to start with a 0.7% gel and change subsequently if the desired separation is not achieved. Nucleic acids must be stained prior to visualization. Most laboratories use ethidium bromide but other stains (e.g., SYBR green, GelStar) are available. -
Microchip Electrophoresis
Entry Microchip Electrophoresis Sammer-ul Hassan Mechanical Engineering, University of Southampton, Southampton SO17 1BJ, UK; [email protected] Definition: Microchip electrophoresis (MCE) is a miniaturized form of capillary electrophoresis. Electrophoresis is a common technique to separate macromolecules such as nucleic acids (DNA, RNA) and proteins. This technique has become a routine method for DNA size fragmenting and separating protein mixtures in most laboratories around the world. The application of higher voltages in MCE achieves faster and efficient electrophoretic separations. Keywords: electrophoresis; microchip electrophoresis; microfluidics; microfabrications 1. Introduction Electrophoresis is an analytical technique that has been applied to resolve complex mixtures containing DNA, proteins, and other chemical or biological species. Since its discovery in the 1930s by Arne [1], traditional slab gel electrophoresis (SGE) has been widely used until today. Meanwhile, new separation techniques based on electrophoresis continue to be developed in the 21st century, especially in life sciences. Capillary electrophoresis (CE) provides a higher resolution of the separated analytes and allows the automation of the operation. Thus, it has been widely used to characterize proteins and peptides [2], biopharmaceutical drugs [3], nucleic acids [4], and the genome [5]. The development of microfabrication techniques has led to the further miniaturization of electrophoresis known Citation: Hassan, S.-u. Microchip as microchip electrophoresis (MCE). MCE offers many advantages over conventional Electrophoresis. Encyclopedia 2021, 1, capillary electrophoresis techniques such as the integration of different separation functions 30–41. https://dx.doi.org/10.3390/ onto the chip, the consumption of small amounts of sample and reagents, faster analyses encyclopedia1010006 and efficient separations [6,7]. -
QPNC-PAGE Standardized Protocol for Acidic, Basic and Neutral Metalloproteins MW 6 - > 200Kda USE ONLY FRESH GELS
QPNC-PAGE Standardized Protocol For Acidic, Basic and Neutral Metalloproteins MW 6 - > 200kDa USE ONLY FRESH GELS Correspondence: Bernd Kastenholz • Research Centre Juelich • Institute of Chemistry and Dynamics of the Geosphere – Phytosphere (ICG-3) • Juelich 52425 • Germany • E-mail: [email protected] Recommended Tools (Bio-Rad) Model 491 Prep Cell (U.S. patent no. 4,877,510) Power Pac 1000: Constant Power: 5 W; Time: 8 hr Model EP-1 Econo Pump: 1 mL/min; 5 mL/fraction; 80 mL prerun V; 480 ml total V (Eluent) Model 2110 Fraction Collector: 80 Fractions Model EM-1 Econo UV Monitor: AUFS 1.0; Detection Wavelength 254 nm Model 1327 Econo Recorder: Range: 100 mV; Chart Speed: 6 cm/hr Model SV-3 Diverter Ventil Buffer Recirculation Pump: Flow Rate: 95 mL/min (Electrophoresis Buffer) Stock Solutions 1) 200 mM Tris-HCl 10 mM NaN3 pH 10.00 – Keep RT. 2) 200 mM Tris-HCl 10 mM NaN3 pH 8.00 – Keep RT. 3) 40 % Acrylamide/Bis 2.67 % C - Keep 4°C. 4) 10 % Ammonium Persulfate (APS) - Keep 4°C (freshly prepared). Electrophoresis Buffer 20 mM Tris-HCL 1 mM NaN3 pH 10.00 degassed – Keep 4°C Upper Electrophoresis Chamber (Prep Cell): 500 mL Electrophoresis Buffer Lower Electrophoresis Chamber (Prep Cell): 2000 mL Electrophoresis Buffer Eluent 20 mM Tris-HCL 1 mM NaN3 pH 8.00 degassed – Keep 4°C Elution Chamber (Prep Cell): 700 mL Elution Buffer Separating Gel Acrylamide 4% T Volume: 40 mL ingredients: 4 mL 40 % Acrylamide/Bis 2.67 % C 4 mL 200 mM Tris-HCl 10 mM NaN3 pH 10.00 32 mL H2O 200 µL 10% APS 20 µL TEMED Add TEMED and APS at the end. -
Control of Molecular Motor Motility in Electrical Devices
Control of Molecular Motor Motility in Electrical Devices Thesis submitted in accordance with the requirements of The University of Liverpool for the degree of Doctor in Philosophy By Laurence Charles Ramsey Department of Electrical Engineering & Electronics April 2014 i Abstract In the last decade there has been increased interest in the study of molecular motors. Motor proteins in particular have gained a large following due to their high efficiency of force generation and the ability to incorporate the motors into linear device designs. Much of the recent research centres on using these protein systems to transport cargo around the surface of a device. The studies carried out in this thesis aim to investigate the use of molecular motors in lab- on-a-chip devices. Two distinct motor protein systems are used to show the viability of utilising these nanoscale machines as a highly specific and controllable method of transporting molecules around the surface of a lab-on-a-chip device. Improved reaction kinetics and increased detection sensitivity are just two advantages that could be achieved if a motor protein system could be incorporated and appropriately controlled within a device such as an immunoassay or microarray technologies. The first study focuses on the motor protein system Kinesin. This highly processive motor is able to propel microtubules across a surface and has shown promise as an in vitro nanoscale transport system. A novel device design is presented where the motility of microtubules is controlled using the combination of a structured surface and a thermoresponsive polymer. Both topographic confinement of the motility and the creation of localised ‘gates’ are used to show a method for the control and guidance of microtubules. -
Simultaneous Electroporation and Dielectrophoresis in Non-Electrolytic Micro/Nano- Electroporation
UC Berkeley UC Berkeley Previously Published Works Title Simultaneous electroporation and dielectrophoresis in non-electrolytic micro/nano- electroporation. Permalink https://escholarship.org/uc/item/3c79p198 Journal Scientific Reports, 8(1) Authors Lyu, Chenang Wang, Jianping Powell-Palm, Matthew et al. Publication Date 2018-02-06 DOI 10.1038/s41598-018-20535-6 Peer reviewed eScholarship.org Powered by the California Digital Library University of California www.nature.com/scientificreports OPEN Simultaneous electroporation and dielectrophoresis in non- electrolytic micro/nano- Received: 27 October 2017 Accepted: 19 January 2018 electroporation Published: xx xx xxxx Chenang Lyu1,2, Jianping Wang1, Matthew Powell-Palm2 & Boris Rubinsky2 It was recently shown that electrolysis may play a substantial detrimental role in microfuidic electroporation. To overcome this problem, we have developed a non-electrolytic micro/nano electroporation (NEME) electrode surface, in which the metal electrodes are coated with a dielectric. A COMSOL based numerical scheme was used to simultaneously calculate the excitation frequency and dielectric material properties dependent electric feld delivered across the dielectric, fuid fow, electroporation feld and Clausius-Mossotti factor for yeast and E. coli cells fowing in a channel fow across a NEME surface. A two-layer model for yeast and a three-layer model for E. coli was used. The numerical analysis shows that in NEME electroporation, the electric felds could induce electroporation and dielectrophoresis simultaneously. The simultaneous occurrence of electroporation and dielectrophoresis gives rise to several interesting phenomena. For example, we found that a certain frequency exists for which an intact yeast cell is drawn to the NEME electrode, and once electroporated, the yeast cell is pushed back in the bulk fuid. -
Development of Capillary Electrophoresis-Based Microfluidic
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2006 Development of capillary electrophoresis-based microfluidic devices for future medical diagnostics: separation and detection of DNA adducts and other related biomarkers Abdulilah Abdulqader Dawoud Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Analytical Chemistry Commons, and the Physical Chemistry Commons Recommended Citation Dawoud, Abdulilah Abdulqader, "Development of capillary electrophoresis-based microfluidic devices for future medical diagnostics: separation and detection of DNA adducts and other related biomarkers " (2006). Retrospective Theses and Dissertations. 1503. https://lib.dr.iastate.edu/rtd/1503 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Development of capillary electrophoresis-based microfluidic devices for future medical diagnostics: separation and detection of DNA adducts and other related biomarkers by Abdulilah Abdulqader Dawoud A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Physical Chemistry (Chemical Instrumentation) Program of Study Committee: Ryszard Jankowiak, Co-major Professor Mark Gordon, Co-major Professor Edward Yeung Mark Hargrove Mei Hong Iowa State University Ames, Iowa 2006 Copyright © Abdulilah Abdulqader Dawoud, 2006. All rights reserved. UMI Number: 3229064 INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. -
Impact Factor: 3.958/ICV: 4.10 ISSN: 0978-7908 192 REVIEW ON: ELECTROPHORESIS: METHOD for PROTEIN SEPARATION Shindedipa
Impact factor: 3.958/ICV: 4.10 ISSN: 0978-7908 192 Pharma Science Monitor 7(2),Apr-Jun 2016 PHARMA SCIENCE MONITOR AN INTERNATIONAL JOURNAL OF PHARMACEUTICAL SCIENCES Journal home page: http://www.pharmasm.com REVIEW ON: ELECTROPHORESIS: METHOD FOR PROTEIN SEPARATION ShindeDipa V.*, JasminaSurati Department of Quality Assurance, Shree NaranjibhaiLalbhai Patel College of Pharmacy,Umrakh -394 345,Bardoli, Gujarat, India. ABSTRACT Electrophoresis is one of the widely used techniques in molecular biochemistry, microbiology, biomedical research. It is a type of protein separation method .It is one of the highly efficient techniques of analysis and sole method for separation of proteins for western blot, RNA studies etc. It is a both qualitative and quantitative analysis technique. Separation depend upon electrophoretic mobility.Electrophoresis technique are of various type like Moving boundary electrophoresis ,Zone electrophoresis ,Affinity electrophoresis ,Pulsed field electrophoresis ,Dielectrophoresis.this technique mainly used in antibiotic analysis,vaccine analysis DNA analysis and protein analysis as well as fingerprint analysis. KEYWORDS:Electrophoresis, Electrophoretic mobility,Zone Electrophoresis, Moving boundary Electrophoresis, Dielectricphoresis. INTRODUCTION Electrophoresis is a physical method of analysis based on the migration of electrically charged proteins, colloids, molecules or other particles dissolved or dispersed in an electrolyte solution in the direction of the electrode bearing the opposite polarity when an electric current is passed through it. Separations may be conducted in systems without support phases (such as free solution separation in capillary electrophoresis) or in stabilising media such as thin-later plates, filins or gels. The electrophoretic mobility is the rate of movement in metres per second of the charged particles under the action of an electric field of I volt per metre and is expressed in square metres per volt second. -
Protein Blotting Guide
Electrophoresis and Blotting Protein Blotting Guide BEGIN Protein Blotting Guide Theory and Products Part 1 Theory and Products 5 Chapter 5 Detection and Imaging 29 Total Protein Detection 31 Transfer Buffer Formulations 58 5 Chapter 1 Overview of Protein Blotting Anionic Dyes 31 Towbin Buffer 58 Towbin Buffer with SDS 58 Transfer 6 Fluorescent Protein Stains 31 Stain-Free Technology 32 Bjerrum Schafer-Nielsen Buffer 58 Detection 6 Colloidal Gold 32 Bjerrum Schafer-Nielsen Buffer with SDS 58 CAPS Buffer 58 General Considerations and Workflow 6 Immunodetection 32 Dunn Carbonate Buffer 58 Immunodetection Workflow 33 0.7% Acetic Acid 58 Chapter 2 Methods and Instrumentation 9 Blocking 33 Protein Blotting Methods 10 Antibody Incubations 33 Detection Buffer Formulations 58 Electrophoretic Transfer 10 Washes 33 General Detection Buffers 58 Tank Blotting 10 Antibody Selection and Dilution 34 Total Protein Staining Buffers and Solutions 59 Semi-Dry Blotting 11 Primary Antibodies 34 Substrate Buffers and Solutions 60 Microfiltration (Dot Blotting) Species-Specific Secondary Antibodies 34 Stripping Buffer 60 Antibody-Specific Ligands 34 Blotting Systems and Power Supplies 12 Detection Methods 35 Tank Blotting Cells 12 Colorimetric Detection 36 Part 3 Troubleshooting 63 Mini Trans-Blot® Cell and Criterion™ Blotter 12 Premixed and Individual Colorimetric Substrates 38 Transfer 64 Trans-Blot® Cell 12 Immun-Blot® Assay Kits 38 Electrophoretic Transfer 64 Trans-Blot® Plus Cell 13 Immun-Blot Amplified AP Kit 38 Microfiltration 65 Semi-Dry Blotting Cells -
MICROFLUIDIC PARTICLE and CELL MANIPULATION USING RESERVOIR- BASED DIELECTROPHORESIS Saurin Patel Clemson University, [email protected]
Clemson University TigerPrints All Dissertations Dissertations 8-2014 MICROFLUIDIC PARTICLE AND CELL MANIPULATION USING RESERVOIR- BASED DIELECTROPHORESIS Saurin Patel Clemson University, [email protected] Follow this and additional works at: https://tigerprints.clemson.edu/all_dissertations Part of the Mechanical Engineering Commons Recommended Citation Patel, Saurin, "MICROFLUIDIC PARTICLE AND CELL MANIPULATION USING RESERVOIR-BASED DIELECTROPHORESIS" (2014). All Dissertations. 1323. https://tigerprints.clemson.edu/all_dissertations/1323 This Dissertation is brought to you for free and open access by the Dissertations at TigerPrints. It has been accepted for inclusion in All Dissertations by an authorized administrator of TigerPrints. For more information, please contact [email protected]. MICROFLUIDIC PARTICLE AND CELL MANIPULATION USING RESERVOIR-BASED DIELECTROPHORESIS A Dissertation Presented to the Graduate School of Clemson University In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy Mechanical Engineering by Saurin H.Patel Aug 2014 Accepted by: Dr. Xiangchun Xuan, Committee Chair Dr. John R. Saylor Dr. Richard S. Miller Dr. Rui Qiao i ABSTRACT Controlled manipulation of synthetic particles and biological cells from a complex mixture is important to a wide range of applications in biology, environmental monitoring, and pharmaceutical industry. In the past two decades microfluidics has evolved to be a very useful tool for particle and cell manipulations in miniaturized devices. A variety of force fields have been demonstrated to control particle and cell motions in microfluidic devices, among which electrokinetic techniques are most often used. However, to date, studies of electrokinetic transport phenomena have been primarily confined within the area of microchannels. Very few works have addressed the electrokinetic particle motion at the reservoir-microchannel junction which acts as the interface between the macro (i.e., reservoir) and the micro (i.e., microchannel) worlds in real microfluidic devices. -
Assessment of Sub-Micron Particles by Exploiting Charge Differences with Dielectrophoresis
micromachines Article Assessment of Sub-Micron Particles by Exploiting Charge Differences with Dielectrophoresis Maria F. Romero-Creel, Eric Goodrich, Danielle V. Polniak and Blanca H. Lapizco-Encinas * ID Microscale Bioseparations Laboratory and Biomedical Engineering Department, Rochester Institute of Technology, Rochester, NY 14623, USA; [email protected] (M.F.R.-C.); [email protected] (E.G.); [email protected] (D.V.P.) * Correspondence: [email protected]; Tel.: +1-585-475-2773 Received: 7 July 2017; Accepted: 30 July 2017; Published: 2 August 2017 Abstract: The analysis, separation, and enrichment of submicron particles are critical steps in many applications, ranging from bio-sensing to disease diagnostics. Microfluidic electrokinetic techniques, such as dielectrophoresis (DEP) have proved to be excellent platforms for assessment of submicron particles. DEP is the motion of polarizable particles under the presence of a non-uniform electric field. In this work, the polarization and dielectrophoretic behavior of polystyrene particles with diameters ranging for 100 nm to 1 µm were studied employing microchannels for insulator based DEP (iDEP) and low frequency (<1000 Hz) AC and DC electric potentials. In particular, the effects of particle surface charge, in terms of magnitude and type of functionalization, were examined. It was found that the magnitude of particle surface charge has a significant impact on the polarization and dielectrophoretic response of the particles, allowing for successful particle assessment. Traditionally, charge differences are exploited employing electrophoretic techniques and particle separation is achieved by differential migration. The present study demonstrates that differences in the particle’s surface charge can also be exploited by means of iDEP; and that distinct types of nanoparticles can be identified by their polarization and dielectrophoretic behavior. -
Blotting Complete Mini Mini Electro Blot System Electro Blot System
Blotting Complete Mini Mini Electro Blot System Electro Blot System Complete Mini MEBM10 Sub Blot System MEBM10 / MSB10 MV-10CBS Electro Blot Systems are primarily designed for wet electrophoresis of proteins, and offer a combination of increased capacity with economical features. Electro Blot Systems have increased capacity over standard systems. Up to five gel blot cassettes may be utilized at any time for Electro Blot Mini. This is especially intensity coiled electrode and ensures uniform transfer across the blot surface. The cassette’s open architecture that ensures the maximum blot area allows direct transfer of current. Its rigid construction that ensures contact between the gel and membrane is retained throughout the blot and an even pressure is maintained. These units are compatible with magnetic stirrers to aid heat dispersal and prevent pH drifts in the buffer due to incomplete buffer mixing. Each unit includes a cooling pack to further enhance transfer efficiency by removing excess heat. This also saves buffer for added economy. The Complete Electrophoresis Systems include both modules for gel electrophoresis, electroblotting and accessories, to provide a complete Mini gel Complete Mini Electro & Blot System casting, running and electroblotting system. The electroblotting module includes four inter-locking cassettes and sixteen fiber pads. A high intensity current is generated by coiled platinum electrodes. These features, in conjunction with the advanced cooling system allow for rapid electroblotting in as little as one hour. MV-10CBS For MEBM series Features • Ideal for wet electroblotting of proteins – Western Blotting • Hinged cassettes for added convenience • Accommodates gel thickness from 0.25 to 3mm For MV-CBS series Features • Versatile: Interchangeable modules for slab gel and Electroblotting using a single universal buffer tank • Hinged cassettes • High intensity electrodes • blot capacity • Rapid set-up cooling 32 Blotting Cat. -
DNA Manipulation by Means of Insulator‐Based Dielectrophoresis
Electrophoresis 2009, 30, 4195–4205 4195 Roberto C. Gallo-Villanueva1 Research Article Carlos E. Rodrı´guez-Lo´ pez1 Rocı´oI.Dı´az-de-la-Garza2 Claudia Reyes-Betanzo3 DNA manipulation by means of insulator- Blanca H. Lapizco-Encinas1 based dielectrophoresis employing direct 1Departamento de Biotecnologı´a current electric fields e Ingenierı´a de Alimentos y Centro de Biotecnologı´a, Tecnolo´ gico de Monterrey, Electrokinetic techniques offer a great potential for biological particle manipulation. Monterrey, Nuevo Leo´ n, Me´ xico 2 Among these, dielectrophoresis (DEP) has been successfully utilized for the concentra- Departamento de tion of bioparticles. Traditionally, DEP is performed employing microelectrodes, an Agrobiotecnologı´a y Agronegocios y Centro de approach with attractive characteristics but expensive due to microelectrode fabrication Biotecnologı´a, Tecnolo´ gico de costs. An alternative is insulator-based DEP, a method where non-uniform electric fields Monterrey, Monterrey, Nuevo are created with arrays of insulating structures. This study presents the concentration of Leo´ n, Me´ xico 3Departamento de Electro´ nica, linear DNA particles (pET28b) employing a microchannel, with an array of cylindrical Instituto Nacional de Astrofı´sica, insulating structures and direct current electric fields. Results showed manipulation of O´ ptica y Electro´ nica, DNA particles with a combination of electroosmotic, electrophoretic, and dielec- Tonantzintla, Puebla, Me´ xico trophoretic forces. Employing suspending media with conductivity of 104 mS/cm and pH of 11.15, under applied fields between 500 and 1500 V/cm, DNA particles were observed Received June 2, 2009 to be immobilized due to negative dielectrophoretic trapping. The observation of DNA Revised September 8, 2009 aggregates that occurred at higher applied fields, and dispersed once the field was Accepted September 15, 2009 removed is also included.