Dual Targeting of Mesenchymal and Amoeboid Motility Hinders Metastatic Behavior Brandon C
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A Viable Therapy Against Metastatic Breast Cancer
Graduate Theses, Dissertations, and Problem Reports 2017 Dual Targeting of the Mesenchymal and Amoeboid Pathways: A Viable Therapy against Metastatic Breast Cancer Brandon C. Jones Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Jones, Brandon C., "Dual Targeting of the Mesenchymal and Amoeboid Pathways: A Viable Therapy against Metastatic Breast Cancer" (2017). Graduate Theses, Dissertations, and Problem Reports. 5905. https://researchrepository.wvu.edu/etd/5905 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Dual Targeting of the Mesenchymal and Amoeboid Pathways: A Viable Therapy against Metastatic Breast Cancer Brandon C. Jones Dissertation submitted to the School of Medicine at West Virginia University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biochemistry & Molecular Biology Elena Pugacheva, Ph.D., Chair J. Michael Ruppert, M.D., Ph.D. Maxim Sokolov, Ph.D. Michael Schaller, Ph.D. Scott Weed, Ph.D. -
Dense Active Matter Model of Motion Patterns in Confluent Cell Monolayers Henkes, Silke; Kostanjevec, Kaja; Collinson, J
University of Dundee Dense active matter model of motion patterns in confluent cell monolayers Henkes, Silke; Kostanjevec, Kaja; Collinson, J. Martin; Sknepnek, Rastko; Bertin, Eric Published in: Nature Communications DOI: 10.1038/s41467-020-15164-5 Publication date: 2020 Licence: CC BY Document Version Publisher's PDF, also known as Version of record Link to publication in Discovery Research Portal Citation for published version (APA): Henkes, S., Kostanjevec, K., Collinson, J. M., Sknepnek, R., & Bertin, E. (2020). Dense active matter model of motion patterns in confluent cell monolayers. Nature Communications, 11, [1405]. https://doi.org/10.1038/s41467-020-15164-5 General rights Copyright and moral rights for the publications made accessible in Discovery Research Portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from Discovery Research Portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain. • You may freely distribute the URL identifying the publication in the public portal. Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Download date: 29. Sep. 2021 ARTICLE https://doi.org/10.1038/s41467-020-15164-5 OPEN Dense active matter model of motion patterns in confluent cell monolayers ✉ ✉ ✉ Silke Henkes 1,2 , Kaja Kostanjevec3, J. -
Plasticity of Cell Migration Resulting from Mechanochemical Coupling Yuansheng Cao†, Elisabeth Ghabache†, Wouter-Jan Rappel*
RESEARCH ARTICLE Plasticity of cell migration resulting from mechanochemical coupling Yuansheng Cao†, Elisabeth Ghabache†, Wouter-Jan Rappel* Department of Physics, University of California, San Diego, La Jolla, United States Abstract Eukaryotic cells can migrate using different modes, ranging from amoeboid-like, during which actin filled protrusions come and go, to keratocyte-like, characterized by a stable morphology and persistent motion. How cells can switch between these modes is not well understood but waves of signaling events are thought to play an important role in these transitions. Here we present a simple two-component biochemical reaction-diffusion model based on relaxation oscillators and couple this to a model for the mechanics of cell deformations. Different migration modes, including amoeboid-like and keratocyte-like, naturally emerge through transitions determined by interactions between biochemical traveling waves, cell mechanics and morphology. The model predictions are explicitly verified by systematically reducing the protrusive force of the actin network in experiments using Dictyostelium discoideum cells. Our results indicate the importance of coupling signaling events to cell mechanics and morphology and may be applicable in a wide variety of cell motility systems. DOI: https://doi.org/10.7554/eLife.48478.001 Introduction Eukaryotic cell migration is a fundamental biological process that is essential in development and wound healing and plays a critical role in pathological diseases, including inflammation and -
Inter-Kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration Through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway
http://www.diva-portal.org This is the published version of a paper published in PLoS Pathogens. Citation for the original published paper (version of record): Simon, S., Schell, U., Heuer, N., Hager, D., Albers, M F. et al. (2015) Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42-ARHGEF9-Dependent Pathway. PLoS Pathogens, 11(12): e1005307 http://dx.doi.org/10.1371/journal.ppat.1005307 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-114332 RESEARCH ARTICLE Inter-kingdom Signaling by the Legionella Quorum Sensing Molecule LAI-1 Modulates Cell Migration through an IQGAP1-Cdc42- ARHGEF9-Dependent Pathway Sylvia Simon1,2, Ursula Schell1, Natalie Heuer3, Dominik Hager4, Michael F. Albers5, Jan Matthias3, Felix Fahrnbauer4, Dirk Trauner4, Ludwig Eichinger3, Christian Hedberg5,6, Hubert Hilbi1,2* 1 Max von Pettenkofer Institute, Ludwig-Maximilians University, Munich, Germany, 2 Institute of Medical Microbiology, University of Zürich, Zürich, Switzerland, 3 Institute of Biochemistry I, University of Cologne, Cologne, Germany, 4 Department of Chemistry, Ludwig-Maximilians University, Munich, Germany, 5 Department of Chemistry and Umeå Center for Microbial Research, Umeå University, Umeå, Sweden, 6 Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, Dortmund, Germany * [email protected] OPEN ACCESS Citation: Simon S, Schell U, Heuer N, Hager D, Abstract Albers MF, Matthias J, et al. (2015) Inter-kingdom Signaling by the Legionella Quorum Sensing Small molecule signaling promotes the communication between bacteria as well as Molecule LAI-1 Modulates Cell Migration through an between bacteria and eukaryotes. -
Emergence of Self-Organized Amoeboid Movement in a Multi-Agent Approximation of Physarum Polycephalum
Emergence of Self-Organized Amoeboid Movement in a Multi-Agent Approximation of Physarum polycephalum Jeff Jones and Andrew Adamatzky Centre for Unconventional Computing, University of the West of England, Coldharbour Lane, Bristol BS16 1QY, UK. [email protected] , [email protected] Abstract: The giant single-celled slime mould Physarum polycephalum exhibits complex morphological adaptation and amoeboid movement as it forages for food and may be seen as a minimal example of complex robotic behaviour. Swarm computation has previously been used to explore how spatio- temporal complexity can emerge from, and be distributed within, simple component parts and their interactions. Using a particle based swarm approach we explore the question of how to generate collective amoeboid movement from simple non-oscillatory component parts in a model of P. polycephalum . The model collective behaves as a cohesive and deformable virtual material, approximating the local coupling within the plasmodium matrix. The collective generates de-novo and complex oscillatory patterns from simple local interactions. The origin of this motor behaviour is distributed within the collective rendering is morphologically adaptive, amenable to external influence, and robust to simulated environmental insult. We show how to gain external influence over the collective movement by simulated chemo-attraction (pulling towards nutrient stimuli) and simulated light irradiation hazards ( pushing from stimuli). The amorphous and distributed properties of the collective are demonstrated by cleaving it into two independent entities and fusing two separate entities to form a single device, thus enabling it to traverse narrow, separate or tortuous paths. We conclude by summarising the contribution of the model to swarm based robotics and soft-bodied modular robotics and discuss the future potential of such material approaches to the field. -
Protozoa : Locomotion and Nutrition
Protozoa : locomotion and Nutrition Lecturer : P. V. Deokar Department of Zoology R.K.M.M. Ahmednagar Locomotion in Protozoa • The following points highlight the three main types of locomotion exhibited by protozoans. The types of locomotion are: • 1. Amoeboid Movement • 2. Flagellar Movement • 3. Ciliary Movement. Protozoans: Type of Locomotion # 1. Amoeboid Movement: • movement of the animal is made by the throwing of pseudopodium, called amoeboid movement • In the direction of movement of Amoeba a new pseudopodium is formed and the pseudopodium at the opposite side gradually disappears. • Types of pseudopodia: • According to form, structure and activity four different kinds of pseudopodia are recognised • These are: • (a) Lobopodium • (b) Filopodium • (c) Reticulopodium or Rhizopodium • (d) Axopodium or Actinopodium (a) Lobopodium [Gk. lobes = lobe; podium = foot]: • It is a short, finger or tongue-like projection which is accompanied by a flow of endoplasm and ectoplasm. • The pseudopodium is broad with rounded or blunt tips. • The ectoplasmmic area is distinctly clear, called the hyaline cap. • It is the characteristic of many amoebas such as Amoeba. (b) Filopodium [L.filo = a thread; podium = foot]: • The filopodium is a slender, thread-like or filamentous projection. • It is formed by the ectoplasm alone and without a hyaline cap. • The filaments are narrow and may be branched but do not anastomose, Filopodium is the characteristic in Filosea (e.g., Euglypha ). (c) Reticulopodium or Rhizopodium [L. reticulos = a net, podium = foot]: • Similar in structure to that of filopodium but the branches anastomose. • The numerous branched and anastomosed pseudopodia form a dense network, help primarily in capturing the prey and the secondary function is locomotion. -
As a Generative Model of Collective Cell Migration Mechanisms Arnab Barua1,2,6, Josue M
www.nature.com/scientificreports OPEN A least microenvironmental uncertainty principle (LEUP) as a generative model of collective cell migration mechanisms Arnab Barua1,2,6, Josue M. Nava‑Sedeño2,4,6, Michael Meyer‑Hermann1,3 & Haralampos Hatzikirou1,2,5* Collective migration is commonly observed in groups of migrating cells, in the form of swarms or aggregates. Mechanistic models have proven very useful in understanding collective cell migration. Such models, either explicitly consider the forces involved in the interaction and movement of individuals or phenomenologically defne rules which mimic the observed behavior of cells. However, mechanisms leading to collective migration are varied and specifc to the type of cells involved. Additionally, the precise and complete dynamics of many important chemomechanical factors infuencing cell movement, from signalling pathways to substrate sensing, are typically either too complex or largely unknown. The question is how to make quantitative/qualitative predictions of collective behavior without exact mechanistic knowledge. Here we propose the least microenvironmental uncertainty principle (LEUP) that may serve as a generative model of collective migration without precise incorporation of full mechanistic details. Using statistical physics tools, we show that the famous Vicsek model is a special case of LEUP. Finally, to test the biological applicability of our theory, we apply LEUP to construct a model of the collective behavior of spherical Serratia marcescens bacteria, where the underlying migration mechanisms remain elusive. Collective movement of dense populations is observed in several biological systems at diferent scales, from mas- sive migration of mammals 1 to cells during embryogenesis 2. In these systems, individuals which are able to propel themselves independently and interact with other nearby, start moving in a coordinated fashion once enough similar individuals are brought together. -
On the Physiology of Amoeboid Movement
ON THE PHYSIOLOGY OF AMOEBOID MOVEMENT. IV.—THE ACTION OF MAGNESIUM. BY C. F. A. PANTIN. {The Marine Biological Laboratory, Plymouth?) (Received January 6th, 1926.) CONTENTS 1. Maintenance of the cell-surface . 297 6. The action of Ce'" in the pres- 2. The action of barium . 300 ence of Ca" .... 306 3. The action of cerium . 301 4. Action of Mg" in the presence 7. Discussion 306 of Ca" 302 8. Summary 310 5. Interaction of the ions of sea- 9. References 311 water 303 THE previous paper of this series (Pantin, 1926) described the action of certain ions upon a species of marine amoeba, and especially the relation of calcium to amoeboid movement. The same paper detailed the method of preparing isotonic salt solutions and of determining their effect on amoeboid movement. The essential feature is that the average velocity is taken as a measure of the effect of a solution upon the power of movement, apart from other effects produced upon the cell. Unless otherwise stated, the CH of the solutions was maintained at /H 7.0 to 7.2. 1. Maintenance of the cell-surface. It was shown previously that whereas cytolysis occurred rapidly in pure isotonic NaCl or KCl (at about />H 7), amoebae remained alive for a longer time in isotonic CaCl= and MgClj. Movement was inhibited in these solutions, but reversibly, for, provided immersion had been brief, recovery occurred on return to natural sea-water. In mixtures of two salts, it was found that movement only occurred if Ca were 297 C. F. A. -
Candida Albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Kenneth Nickerson Papers Papers in the Biological Sciences 2015 Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C. Hargarten University of Nebraska - Lincoln Tyler C. Moore University of Nebraska - Lincoln Thomas M. Petro University of Nebraska Medical Center, [email protected] Kenneth W. Nickerson University of Nebraska - Lincoln, [email protected] Audrey L. Atkin University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/bioscinickerson Part of the Environmental Microbiology and Microbial Ecology Commons, Other Life Sciences Commons, and the Pathogenic Microbiology Commons Hargarten, Jessica C.; Moore, Tyler C.; Petro, Thomas M.; Nickerson, Kenneth W.; and Atkin, Audrey L., "Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration" (2015). Kenneth Nickerson Papers. 1. https://digitalcommons.unl.edu/bioscinickerson/1 This Article is brought to you for free and open access by the Papers in the Biological Sciences at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Kenneth Nickerson Papers by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Candida albicans Quorum Sensing Molecules Stimulate Mouse Macrophage Migration Jessica C. Hargarten,a Tyler C. Moore,a* Thomas M. Petro,b Kenneth W. Nickerson,a Audrey L. Atkina School of Biological Sciences, University of Nebraska, Lincoln, Nebraska, USAa; Department of Oral Biology, University of Nebraska Medical Center, Lincoln, Nebraska, USAb The polymorphic commensal fungus Candida albicans causes life-threatening disease via bloodstream and intra-abdominal infections in immunocompromised and transplant patients. Although host immune evasion is a common strategy used by suc- cessful human fungal pathogens, C. -
From Cell to Multi-Crypt: Agent-Based Models of the Human Colon Suggests Novel Processes of Field Cancerisation
This is a repository copy of From cell to multi-crypt: Agent-based models of the human colon suggests novel processes of field cancerisation. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/155727/ Version: Accepted Version Article: Ingham-Dempster, T.A., Rosser, R., Corfe, B.M. et al. (1 more author) (2020) From cell to multi-crypt: Agent-based models of the human colon suggests novel processes of field cancerisation. Journal of Computational Science. 101066. ISSN 1877-7503 https://doi.org/10.1016/j.jocs.2019.101066 Article available under the terms of the CC-BY-NC-ND licence (https://creativecommons.org/licenses/by-nc-nd/4.0/). Reuse This article is distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs (CC BY-NC-ND) licence. This licence only allows you to download this work and share it with others as long as you credit the authors, but you can’t change the article in any way or use it commercially. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ From Cell to Multi-crypt: Agent-based Models of the Human Colon Suggests Novel Processes of Field Cancerisation Timothy A. Ingham-Dempster1,2,3, Ria Rosser2, Bernard M. Corfe,1,2, and Dawn C. -
Controlled Spatial Organization of Bacterial Clusters Reveals Cell Filamentation Is Vital for Xylella Fastidiosa Biofilm Formation
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.08.425936; this version posted January 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Controlled spatial organization of bacterial clusters reveals cell filamentation is vital for Xylella fastidiosa biofilm formation Silambarasan Anbumani1, Aldeliane M. da Silva,1 Eduarda Regina Fischer2, Mariana de Souza e Silva2, Antônio A.G. von Zuben1, Hernandes F. Carvalho3, Alessandra A. de Souza2, Richard Janissen4,* and Monica A. Cotta1,* 1Department of Applied Physics, Institute of Physics “Gleb Wataghin”, University of Campinas- 13083-859 Campinas, São Paulo, Brazil 2Citrus Center APTA “Sylvio Moreira” Agronomic Institute of Campinas 13490-970 Cordeirópolis, São Paulo, Brazil 3Department of Structural and Functional Biology, Institute of Biology, University of Campinas, 13083-862, Campinas, São Paulo, Brazil 4Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, The Netherlands *Corresponding authors: [email protected]; [email protected] KEYWORDS: Biofilm formation, filamentous cells, bacterial adhesion, gold micro patterning, quorum sensing, cell-cell communication, diffusive signaling factors ABSTRACT The morphological plasticity of bacteria to form filamentous cells commonly represents an adaptive strategy induced by stresses. In contrast, for diverse pathogens filamentous cells have been observed during biofilm formation, with function yet to be elucidated. To identify prior hypothesized quorum sensing as trigger of such cell morphogenesis, spatially controlled cell adhesion is pivotal. Here, we demonstrate highly-selective cell adhesion of the biofilm-forming phytopathogen Xylella fastidiosa to gold-patterned SiO2 substrates with well-defined geometries and dimensions. -
Bio 314 Animal Behv Bio314new
NATIONAL OPEN UNIVERSITY OF NIGERIA SCHOOL OF SCIENCE AND TECHNOLOGY COURSE CODE: BIO 314: COURSE TITLE: ANIMAL BEHAVIOUR xii i BIO 314: ANIMAL BEHAVIOUR Course Writers/Developers Miss Olakolu Fisayo Christie Nigerian Institute for Oceanography and Marine Research, No 3 Wilmot Point Road, Bar-beach Bus-stop, Victoria Island, Lagos, Nigeria. Course Editor: Dr. Adesina Adefunke Ministry of Health, Alausa. Lagos NATIONAL OPEN UNIVERSITY OF NIGERIA xii i BIO 314 COURSE GUIDE Introduction Animal Behaviour (314) is a second semester course. It is a two credit units compustory course which all students offering Bachelor of Science (BSc) in Biology must take. This course deals with the theories and principles of adaptive behaviour and evolution of animals. The course contents are history of ethology. Reflex and complex behaviour. Orientation and taxes. Fixed action patterns, releasers, motivation and driver. Displays, displacement activities and conflict behaviour. Learning communication and social behaviour. The social behaviour of primates. Hierarchical organization. The physiology of behaviour. Habitat selection, homing and navigation. Courtship and parenthood. Biological clocks. What you will learn in this course In this course, you have the course units and a course guide. The course guide will tell you briefly what the course is all about. It is a general overview of the course materials you will be using and how to use those materials. It also helps you to allocate the appropriate time to each unit so that you can successfully complete the course within the stipulated time limit. The course guide also helps you to know how to go about your Tutor-Marked-Assignment which will form part of your overall assessment at the end of the course.