PALEOPATHOLOGY ASSOCIATION SCIENTIFIC PROGRAM VIRTUAL 48Th Annual North American Meeting April 6-23, 2021 MEETING OVERVIEW

Total Page:16

File Type:pdf, Size:1020Kb

PALEOPATHOLOGY ASSOCIATION SCIENTIFIC PROGRAM VIRTUAL 48Th Annual North American Meeting April 6-23, 2021 MEETING OVERVIEW PALEOPATHOLOGY ASSOCIATION SCIENTIFIC PROGRAM VIRTUAL 48th Annual North American Meeting April 6-23, 2021 MEETING OVERVIEW VIRTUAL 48th Annual North American Meeting of the Paleopathology Association April 6-23, 2021 (all times EDT) Date Time (EDT) Session April 6-9 Tues April 6 8:00 am Poster Hall Opens Tues April 6 11:00 am – 2:30 pm President’s Welcome – aDNA symposium podium Wed April 7 11:00 am – 1:30 pm Podium presentations April 12-16: Mentoring Week Mon April 12 11:00 am – 1:00 pm Poster: Cockburn Student Prize & Jane E. Buikstra Early Career Award entries Poster panel discussion of pre-recorded poster presentations. 1. Trauma 2. Metabolic diseases & stress 3. Open paleopathology Mon April 12 1:00 pm – 2:00 pm Meet-a-Mentor Tues April 13 1:00 pm – 2:00 pm Meet-a-Mentor Wed April 14 1:00 pm – 2:00 pm Student Group: 3MT event Thurs April 15 1:00 pm – 2:00 pm Meet-a-Mentor Fri April 16 11:00 am – 1:30 pm Podium: Cockburn Student Prize & Jane E. Buikstra Early Career Award entries April 19-23 Thurs Ap 22 11:00 am – 1:00 pm Poster: Regular Poster panel discussion of pre-recorded poster presentations. 1. Metabolic diseases, stress & infectious diseases 2. Trauma 3. Open paleopathology Fri Ap 23 11:00 am – 12:00 pm Podium presentations followed by 15min break 12:15 pm – 2:00 pm Association Annual Business & Awards Meeting 48th Annual North American Meeting of the Paleopathology Association 2 PROGRAM NOTES Virtual links: Conference registrants will be sent links to the Poster Hall and Virtual Webinar Conference from the conference facilitator, Burk & Associates. The email will be from ‘paleopathology’<[email protected]>. Poster Hall: Posters will be available for viewing through ePosters beginning April 6. Posters will remain available for viewing and correspondence for 1 year past the conference. To ensure that we have a lively discussion during the two scheduled Poster Sessions, viewers can post comments, but the ‘chat’ function on ePoster will be enabled after the associated Poster Session. Poster Sessions: There will be two Live Poster Panel sessions, each with three topical sections, where presenters will be available to answer questions about their research. Podium Sessions: These sessions will follow our traditional format, with each presenter giving a 12-minute presen- tation followed by 3 minutes for questions. Meet-a-Mentor: In lieu of ‘Let’s-do-Lunch,’ participating regular members and students will be partnered and each group will arrange a 1-hour chat at a time convenient to them, ideally during the suggested times during Mento- ring Week (April 12-16). Participants should expect an email with mentor partnering information from our Direc- tor-at-Large (Student Liaison), Tracy Betsinger ([email protected]), around Tuesday, March 30. Student Group 3MT (Three-minute thesis): Talks will be recorded and posted to the PPASG-run YouTube channel (with speaker permission). Association Annual Business Meeting and Award Presentation: The PPA Secretary will email a Webinar link to ALL PPA members to join the conference participants in the meeting portion of the conference. This link will be sent on the evening of Thursday, April 22. More meeting information: paleopathology-association.wildapricot.org/event-3613136 48th Annual North American Meeting of the Paleopathology Association 3 SCIENTIFIC PROGRAM TUESDAY, April 6 11:00 am – 11:05 am President’s Welcome Annie Katzenberg 11:00 am – 2:30 pm SYMPOSIUM Ancient DNA and paleopathology: reconstructing pathogen evolutionary histories in historical and archaeological contexts. Organized by Kelly E BLEVINS Chair Kelly E BLEVINS 11:05 Symposium opening remarks Kelly E BLEVINS 11:15 Promise and pitfalls in ancient DNA research: What can we learn from ancient pathogens? Anne C STONE 11:30 Illuminating Treponema pallidum’s evolutionary history with ancient genomes Verena SCHUENEMANN, Gülfirde AKGÜL, Kerttu MAJANDER 11:45 DNA analysis of an ancient brucellosis case from Bronze Age eastern Europe Gunnar NEUMANN, Maria SPYROU, Ayshin GHALICHI, Marcel KELLER, Joachim BURGER, Volker HEYD, Viktor I KLOCHKO, Aleksander KOŚKO, Piotr WŁODARCZAK, Danuta ŻURKIEWICZ, Alexander HERBIG, Wolfgang HAAK, Johannes KRAUSE 12:00 What we talk about when we talk about dating: Tuberculosis and the tangled evidence for its antiquity Susanna SABIN, Elizabeth A NELSON, Anne C STONE, Jane E BUIKSTRA ++ 12:15 Zoonotic Mycobacterium tuberculosis complex strains from geographically dispersed pre-contact South American human populations Åshild J VÅGENE, Tanvi P HONAP, Kelly M HARKINS, Michael S ROSENBERG, Karen GIFFIN, Felipe CÁRDENAS- ARROYO, Laura Paloma LEGUIZAMÓN, Judith ARNETT, Jane E BUIKSTRA, Alexander HERBIG, Anne C STONE, Kirsten I BOS, Johannes KRAUSE 12:30 pm – 12:45 pm COFFEE BREAK 12:45 Tuberculosis in the wake of Wari imperial decline in Pre-Hispanic Peru Elizabeth NELSON, Aditya Kumar LANKALIPALLI, Maria SPYROU, Åshild VÅGENE, Susanna SABIN, James A Fellows YATES, Tiffiny A TUNG, Alexander HERBIG, Kirsten I BOS *** 1:00 Skeletal and molecular evidence of the Mycobacterium tuberculosis complex from Tenochtitlan- Tlatelolco, a late Postclassic Mesoamerican urban center (1350-1521 CE) Kelly E BLEVINS, Elizabeth A NELSON, Alexander HERBIG, Johannes KRAUSE, Jane E BUIKSTRA, Josefina Mansilla LORY, Kirsten I BOS, Anne C STONE *** 1:15 The history of tuberculosis in South Africa: Insights and challenges from a multidisciplinary study Tessa CAMPBELL, Anne C STONE, Rebecca ACKERMANN ++ *** Cockburn Student Prize Entrant ++ Jane E. Buikstra Early Career Prize Entrant 48th Annual North American Meeting of the Paleopathology Association 4 SCIENTIFIC PROGRAM 1:30 Reconstructing the genomes of the red complex of pathogens from ancient dental calculus samples from the North American Wichita (500-700 BP) Tanvi HONAP, Cara MONROE, Paul SANDBERG, Rita AUSTIN, Marc LEVINE, Cecil LEWIS 1:45 Revealing the imprints of malaria in antiquity: An integrated ancient DNA and bioarchaeological framework Stephanie MARCINIAK, Tracy L PROWSE, Hendrik N POINAR 2:00 Discussant: Jane E BUIKSTRA WEDNESDAY, April 7 11:00 am – 1:30 pm PODIUM Chair BURK INC. 11:00 It’s only rare if you don’t care: Promising new comprehensive approaches to the paleopathological identification of neurodegenerative disorders Nivien SPEITH 11:15 Classical presentation and the spectrum of disease: The challenge of malignant neoplasms Bruce ROTHSCHILD 11:30 Parasitic infection in the Roman period: Temporal changes from the pre-Roman through medieval periods Marissa L LEDGER, Piers D MITCHELL 11:45 Osteoimmunology as new frontier in treponemal infection: Setting the ground for bioarchaeological analysis and reconstruction of host immunological status using skeletal samples Fabian CRESPO, Emily RICH, Sharon DEWITTE, Molly K ZUCKERMAN 12:00 pm – 12:15 pm COFFEE BREAK 12:15 Osteochondritis dissecans of the knee in individuals of the Coimbra Identified Skeletal Collection (19th-20th centuries): Proposal of a new classification system for paleopathology Ana Rita A SAMPAIO, Bruno M MAGALHÃES, Fernando FONSECA, Rosa Ramos GASPAR, Ana Luísa SANTOS 12:30 Diet and parasitism related to Ancestral Pueblo porotic hyperostosis Karl REINHARD, Isabel TEIXEIRA-SANTOS, Morgana CAMACHO 12:45 Extensive perimortem violence at Shamanka II, Siberia: Differential diagnosis of a probable hunt- er-gatherer massacre Angela LIEVERSE, Rick SCHULTING, Christopher BRONK RAMSEY, Vladimir BAZALIISKII, Artur KHARINSKII, Andrzej WEBER 1:00 Sex determination in juvenile and infant remains using dimorphic enamel peptide analysis Heidi SHAW, Rebecca GOWLAND, Kayla CROWDER, Claire HODSON, Nicolas STEWART, Kurt GRON, Janet MONTEGOMERY 48th Annual North American Meeting of the Paleopathology Association 5 SCIENTIFIC PROGRAM MONDAY, April 12 11:00 am – 1:00 pm POSTER PANELS: COCKBURN STUDENT PRIZE & JANE E. BUIKSTRA EARLY CAREER AWARD ENTRIES Chair Tracy BETSINGER 11:00 am – 11:30 am TRAUMA P.1 Medieval medical treatment for cranial trauma from Ilok, Croatia Eric ANDERSON, Anna OSTERHOLTZ, Mario NOVAK, Anna GREEN, Jennifer HEFFLER *** P.2 Levels of certainty in the diagnosis of cranial blunt force trauma: A test case from the Channel Islands, California (AD1050-early historic) Alycia C DAVIS, Cynthia A Wilczak *** P.3 Analysis of rib trauma in the Erie County poorhouse cemetery assemblage Taylor FLAHERTY, Jennifer BYRNES, Joyce E SIRIANNI *** P.4 Anthropological analysis of vertebral trauma from the Erie County poorhouse cemetery Katherine GADDIS, Jennifer F BYRNES, Joyce E SIRIANNI *** P.5 Surviving trauma in a pre-antibiotic era: A case-study of a mandibular injury in a medieval-modern Portuguese village Dulce NEVES, Ana Maria SILVA, Sofia WASTERLAIN *** P.6 Ancient surgery and social identity: Osteobiography of amputees from late pre-Hispanic Túcume, Peru Megann PHILLIPS, Vanessa CRUZ, Erin K MARTIN, Dylan R SMITH, J Marla TOYNE *** P.7 Intersecting identities and trauma in the Erie County poorhouse cemetery (1851-1913) Jennifer F BYRNES, Katherine GADDIS, Joyce E SIRIANNI ++ P.8 Unique case of coffin birth discovered in Medieval Nubia at Nuri, Sudan Abagail M BREIDENSTEIN, John PARTRIDGE, Meghan E STRONG, Pearce Paul CREASMAN ++ 11:45 am – 12:15 pm METABOLIC DISEASES & STRESS P.9 OsteoLogic: an interactive website for improving consistency in scoring orbital roof lesions Amy ANDERSON, Brianna GARDNER, Chris YANG, Larry MAI *** P.10 Was childhood health declining in the period leading to the Black Death? A comparison of childhood health between the early, late pre-Black
Recommended publications
  • Research on Ancient DNA in the Near East Mateusz Baca*1, Martyna Molak2 1 Center for Precolumbian Studies, University of Warsaw, Ul
    Bioarchaeology of the Near East, 2:39–61 (2008) Research on ancient DNA in the Near East Mateusz Baca*1, Martyna Molak2 1 Center for Precolumbian Studies, University of Warsaw, ul. Krakowskie Przedmieście 26/28, 00-927 Warsaw, Poland email: [email protected] (corresponding author) 2 Institute of Genetics and Biotechnology, University of Warsaw, ul. Pawińskiego 5a, 05-106 Warsaw, Poland Abstract: In the early 1990s, when studies of ancient DNA became possible, new perspectives of analyzing archaeological data also developed. Nowadays, because the methodology related to ancient DNA research is well developed, it has been used to reveal several aspects of human history and interaction. Here we review the basic concepts, methodologies, and recent developments in the fi eld of ancient DNA studies with a special refe- rence to the Near East. Th is includes not only human but also animal and bacterial DNA. Key words: archaeogenetics, aDNA, mtDNA, tuberculosis, animal domestication Introduction Human genomes accumulate mutations gradually over time. Th e forces of genetic drift and natural selection either cause these changes to disappear or to become established in the popu- lation. By the end of the 1990s, Amorim (1999) introduced the term “archaeogenetics” in reference to using information regarding genetic diff erences between humans to understand demographic events that took place in the past. Pioneering studies of human genetic diversity date back to 1970s when Cavalli-Sforza published a report on the diversity of European populations based on classic protein mark- ers (see Cavalli-Sforza et al. 1994 for a review). In the mid-eighties, great opportunities for studying human diversity arose with the invention of polymerase chain reaction (PCR).
    [Show full text]
  • CHRISTINA “TINA” WARINNER (Last Updated October 18, 2018)
    CHRISTINA “TINA” WARINNER (last updated October 18, 2018) Max Planck Institute University of Oklahoma for the Science of Human History (MPI-SHH) Department of Anthropology Department of Archaeogenetics Laboratories of Molecular Anthropology Kahlaische Strasse 10, 07743 Jena, Germany And Microbiome Research (LMAMR) +49 3641686620 101 David L. Boren Blvd, [email protected] Norman, OK 73019 USA www.christinawarinner.com [email protected] http://www.shh.mpg.de/employees/50506/25522 www.lmamr.org APPOINTMENTS W2 Group Leader, Max Planck Institute for the Science of Human History, Germany 2016-present University Professor, Friedrich Schiller University, Jena, Germany 2018-present Presidential Research Professor, Univ. of Oklahoma, USA 2014-present Assistant Professor, Dept. of Anthropology, Univ. of Oklahoma, USA 2014-present Adjunct Professor, Dept. of Periodontics, College of Dentistry, Univ. of Oklahoma, USA 2014-present Visiting Associate Professor, Dept. of Systems Biology, Technical University of Denmark 2015 Research Associate, Dept. of Anthropology, Univ. of Oklahoma, USA 2012-2014 Acting Head of Group, Centre for Evolutionary Medicine, Univ. of Zürich, Switzerland 2011-2012 Research Assistant, Centre for Evolutionary Medicine, Univ. of Zürich, Switzerland 2010-2011 EDUCATION Ph.D., Anthropology, Dept. of Anthropology, Harvard University 2010 Thesis Title: “Life and Death at Teposcolula Yucundaa: Mortuary, Archaeogenetic, and Isotopic Investigations of the Early Colonial Period in Mexico” A.M., Anthropology, Dept. of Anthropology, Harvard University 2008 B.A., with Honors, Anthropology, University of Kansas 2003 B.A., Germanic Literatures and Languages, University of Kansas 2003 SELECTED HONORS, AWARDS, AND FELLOWSHIPS Invited speaker, British Academy, Albert Reckitt Archaeological Lecture (forthcoming) 2019 Invited speaker, EMBL Science and Society (forthcoming, Nov.
    [Show full text]
  • The Global History of Paleopathology
    OUP UNCORRECTED PROOF – FIRST-PROOF, 01/31/12, NEWGEN TH E GLOBA L H ISTORY OF PALEOPATHOLOGY 000_JaneBuikstra_FM.indd0_JaneBuikstra_FM.indd i 11/31/2012/31/2012 44:03:58:03:58 PPMM OUP UNCORRECTED PROOF – FIRST-PROOF, 01/31/12, NEWGEN 000_JaneBuikstra_FM.indd0_JaneBuikstra_FM.indd iiii 11/31/2012/31/2012 44:03:59:03:59 PPMM OUP UNCORRECTED PROOF – FIRST-PROOF, 01/31/12, NEWGEN TH E GLOBA L H ISTORY OF PALEOPATHOLOGY Pioneers and Prospects EDITED BY JANE E. BUIKSTRA AND CHARLOTTE A. ROBERTS 3 000_JaneBuikstra_FM.indd0_JaneBuikstra_FM.indd iiiiii 11/31/2012/31/2012 44:03:59:03:59 PPMM OUP UNCORRECTED PROOF – FIRST-PROOF, 01/31/12, NEWGEN 1 Oxford University Press Oxford University Press, Inc., publishes works that further Oxford University’s objective of excellence in research, scholarship, and education. Oxford New York Auckland Cape Town Dar es Salaam Hong Kong Karachi Kuala Lumpur Madrid Melbourne Mexico City Nairobi New Delhi Shanghai Taipei Toronto With o! ces in Argentina Austria Brazil Chile Czech Republic France Greece Guatemala Hungary Italy Japan Poland Portugal Singapore South Korea Switzerland " ailand Turkey Ukraine Vietnam Copyright © #$%# by Oxford University Press, Inc. Published by Oxford University Press, Inc. %&' Madison Avenue, New York, New York %$$%( www.oup.com Oxford is a registered trademark of Oxford University Press All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording, or otherwise, without the prior permission of Oxford University Press. CIP to come ISBN-%): ISBN $–%&- % ) * + & ' ( , # Printed in the United States of America on acid-free paper 000_JaneBuikstra_FM.indd0_JaneBuikstra_FM.indd iivv 11/31/2012/31/2012 44:03:59:03:59 PPMM OUP UNCORRECTED PROOF – FIRST-PROOF, 01/31/12, NEWGEN To J.
    [Show full text]
  • Course Outline of Record Los Medanos College 2700 East Leland Road Pittsburg CA 94565 (925) 439-2181
    Course Outline of Record Los Medanos College 2700 East Leland Road Pittsburg CA 94565 (925) 439-2181 Course Title: Introduction to Archaeology Subject Area/Course Number: ANTHR-004 New Course OR Existing Course Instructor(s)/Author(s): Liana Padilla-Wilson Subject Area/Course No.: Anthropology Units: 3 Course Name/Title: Introduction to Archaeology Discipline(s): Anthropology Pre-Requisite(s): None Co-Requisite(s): None Advisories: Eligibility for ENGL-100 Catalog Description: This course is an introduction to the fundamental principles of method and theory in archaeology, beginning with the goals of archaeology, going on to consider the basic concepts of culture, time, and space, and discussing the finding and excavation of archaeological sites. Students will analyze the basic methods and theoretical approaches used by archaeologist to reconstruct the past and understand human prehistory. This includes human origins, the peoples of the globe, the origins of agriculture, ancient civilization including the Maya civilization, Classical and Historical archaeological, and finally the relevance of Archaeology today. The course includes an analysis of the nature of scientific inquiry; the history and interdisciplinary nature of archaeological research; dating techniques, methods of survey, excavation, analysis, and interpretation; cultural resource management, professional ethics; and cultural change and sequences. The inclusion of the interdisciplinary approach utilized in this field will provide students with the most up to data interpretation of human origins, the reconstruction of human behavior, and the emergence of cultural, identity, and human existence. Schedule Description : Do you want to be an archaeologist? Have you always wanted to do real life archaeological excavations? In this course you will play a detective, but the mysteries are far more complex and harder to solve than most crimes.
    [Show full text]
  • Curriculum Vitae Johannes Krause
    Curriculum vitae Johannes Krause Born 1980 in Leinefelde, Thuringia, Germany Contact Max Planck Institute for Evolutionary Anthropology Department of Archaeogenetics Deutscher Platz 6 04103 Leipzig, GERMANY E-mail [email protected] Webpage https://www.eva.mpg.de/archaeogenetics/staff.html Research Focus • Ancient DNA • Archaeogenetics • Human Evolution • Ancient Pathogen Genomics • Comparative and Evolutionary Genomics • Human Immunogenetics Present Positions since 2020 Director, Max Planck Institute for Evolutionary Anthropology, Leipzig, Department of Archaeogenetics since 2018 Full Professor for Archaeogenetics, Institute of Zoology and Evolutionary Research, Friedrich Schiller University Jena since 2016 Director, Max-Planck – Harvard Research Center for the Archaeoscience of the Ancient Mediterranean (MHAAM) since 2015 Honorary Professor for Archaeo- and Paleogenetics, Institute for Archaeological Sciences, Eberhard Karls University Tuebingen Professional Career 2014 - 2020 Director, Max Planck Institute for the Science of Human History, Jena, Department of Archaeogenetics 2013 - 2015 Full Professor (W3) for Archaeo- and Paleogenetics, Institute for Archaeological Sciences, Eberhard Karls University Tuebingen 2010 - 2013 Junior Professor (W1) for Palaeogenetics, Institute for Archaeological Sciences, Eberhard Karls University Tuebingen 2008 - 2010 Postdoctoral Fellow at the Max Planck Institute for Evolutionary Anthropology, Department of Evolutionary Genetics, Leipzig, Germany. Research: Ancient human genetics and genomics 2005 -
    [Show full text]
  • Iron Age Nomads of Southern Siberia in Craniofacial Perspective
    ANTHROPOLOGICAL SCIENCE Vol. 122(3), 137–148, 2014 Iron Age nomads of southern Siberia in craniofacial perspective Ryan W. SCHMIDT1,2*, Andrej A. EVTEEV3 1University of Montana, Department of Anthropology, Missoula, MT 59812, USA 2Kitasato University, School of Medicine, Department of Anatomy, Sagamihara, Kanagawa 252-0374, Japan 3Anuchin Research Institute and Museum of Anthropology, Lomonosov Moscow State University, Moscow, 125009, Mokhovaya St., 11, Russia Received 9 April 2014; accepted 24 July 2014 Abstract This study quantifies the population history of Iron Age nomads of southern Siberia by ana- lyzing craniofacial diversity among contemporaneous Bronze and Iron Age (7th–2nd centuries BC) groups and compares them to a larger geographic sample of modern Siberian and Central Asian popula- tions. In our analyses, we focus on peoples of the Tagar and Pazyryk cultures, and Iron Age peoples of the Tuva region. Twenty­six cranial landmarks of the vault and facial skeleton were analyzed on a total of 461 ancient and modern individuals using geometric morphometric techniques. Male and female cra- nia were separated to assess potential sex­biased migration patterns. We explore southern Siberian pop- ulation history by including Turkic­speaking peoples, a Xiongnu Iron Age sample from Mongolia, and a Bronze Age sample from Xinjiang. Results show that male Pazyryk cluster closer to Iron Age Tuvans, while Pazyryk females are more isolated. Conversely, Tagar males seem more isolated, while Tagar fe- males cluster amongst an Early Iron Age southern Siberian sample. When additional modern Siberian samples are included, Tagar and Pazyryk males cluster more closely with each other than females, sug- gesting possible sex­biased migration amongst different Siberian groups.
    [Show full text]
  • Prehistoric Mongolian Archaeology in the Early 21St Century: Developments in the Steppe and Beyond
    Journal of Archaeological Research (2021) 29:431–479 https://doi.org/10.1007/s10814-020-09152-y Prehistoric Mongolian Archaeology in the Early 21st Century: Developments in the Steppe and Beyond Joshua Wright1 Published online: 7 January 2021 © The Author(s) 2021 Abstract There has been a great increase in archaeological research in Mongolia since 2000. Increasingly precise chronologies, regional studies, and the growth of development- driven archaeology are transforming our knowledge of this key region of north- eastern Asia. This review summarizes recent work and provides a narrative of the prehistoric and medieval cultural sequences as presently understood. I focus on long-standing key topics: early human habitation, the adoption of food-producing economies, Bronze Age social transformations, and the emergence of central places and large polities. I argue that, on the one hand, Mongolia has unique data and new examples to ofer the archaeological community and, on the other, that the prehis- tory of Mongolia and the steppe are not so diferent from the rest of the world in its history of research and key questions. This review provides general overviews covering the Upper Paleolithic, Epipaleolithic or Neolithic, and Bronze Age to the Xiongnu period; specifc data related to each period provide jumping-of points for comparative analysis and further examination. Keywords Mongolia · Hunter-gatherers · Nomadic pastoralism · Monumentality · State origins Introduction Mongolia has seen an explosion of high-quality archaeological research and publica- tion during the frst decades of this century. So much so that it is possible for me to write a new, and somewhat unorthodox, narrative of the prehistoric archaeology of Mongolia.
    [Show full text]
  • Phd Thesis Nico Weber
    Computational Approaches for Analyzing Ancient Genomes and Modern Metagenomes Dissertation der Mathematisch-Naturwissenschaftlichen Fakultät der Eberhard Karls Universität Tübingen zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) vorgelegt von Dipl.-Inform. (Bioinformatik) Nico Weber aus Oberhausen Tübingen 2013 Tag der mündlichen Prüfung: 06.02.2014 Dekan: Prof. Dr. Wolfgang Rosenstiel 1. Berichterstatter: Prof. Dr. Daniel H. Huson 2. Berichterstatter: Prof. Dr. Johannes Krause Abstract Modern genomics entered a new era with the invention of next-generation sequencing techniques. Technical progress, high throughput and reasonably cheap costs of the systems enable us to look into the genomic sequences of whole communities or even extinct species. In the first part of this work we present and discuss state-of-the-art methods for analyzing metagenomes efficiently. As the assignment of sequencing reads to known species or functions is one key element in the analysis we discuss currently used methods. Those methods are usually either slow or do not provide all necessary information, such as genome alignments, for a detailed analysis. Here we present a novel approach, which is faster compared to previous methods while still providing genome alignments. Database composition and the assignment of database entries to species or functions is an equally important step during a metagenomic analysis. We inspect how well the taxonomy is covered by commonly used databases such as the NCBI-NR database. We also evaluate the efficiency of assignment methods using either plain text or RefSeq accession numbers to map reference sequences to taxa or functions. In this context we present a method using a the GenBank identifier for classifying reference sequences.
    [Show full text]
  • AIA Bulletin, Fiscal Year 2005
    ARCHAEOLOGICAL INSTITUTE OF AMERICA A I A B U L L E T I N Volume 96 Fiscal Year 2005 AIA BULLETIN, Fiscal Year 2005 Table of Contents GOVERNING BOARD Governing Board . 3 AWARD CITATIONS Gold Medal Award for Distinguished Archaeological Achievement . 4 Pomerance Award for Scientific Contributions to Archaeology . 5 Martha and Artemis Joukowsky Distinguished Service Award . 6 James R . Wiseman Book Award . 6 Excellence in Undergraduate Teaching Award . 7 Conservation and Heritage Management Award . 8 Outstanding Public Service Award . 8 ANNUAL REPORTS Report of the President . 10 Report of the First Vice President . 12 Report of the Vice President for Professional Responsibilities . 13 Report of the Vice President for Publications . 15 Report of the Vice President for Societies . 16 Report of the Vice President for Education and Outreach . 17 Report of the Treasurer . 19 Report of the Editor-in-Chief, American Journal of Archaeology . 24 Report of the Development Committee . 26 MINUTES OF MEETINGS Executive Committee: August 13, 2004 . 28 Executive Committee: September 10, 2004 . 32 Governing Board: October 16, 2004 . 36 Executive Committee: December 8, 2004 . 44 Governing Board: January 6, 2005 . 48 nstitute of America nstitute I 126th Council: January 7, 2005 . 54 Executive Committee: February 11, 2005 . 62 Executive Committee: March 9, 2005 . 66 Executive Committee: April 12, 2005 . 69 Governing Board: April 30, 2005 . 70 R 2006 LECTURES AND PROGRAMS BE M Special Lectures . 80 TE P AIA National Lecture Program . 81 E S 96 (July 2004–June 2005) Volume BULLETIN, the Archaeological © 2006 by Copyright 2 ARCHAEOLOgic AL INStitute OF AMERic A ROLL OF SPECIAL MEMBERS .
    [Show full text]
  • Ancient DNA in Physical Anthropology: a Review Jacqueline E Broida
    Ancient DNA in Physical Anthropology: A Review by Jacqueline E Broida B.A., Miami University, 2006 A thesis submitted to the Graduate School of the University of Colorado in partial fulfillment Of the requirement for the degree of Master of Arts Department of Anthropology 2011 This thesis entitled: Ancient DNA in Physical Anthropology: A Review Written by Jacqueline E Broida Has been approved for the Department of Anthropology X Dennis Van Gerven X Darna Dufour X Herbert Covert Date _________ The final copy of this thesis has been examined by the signatories, and we Find that both the content and the form meet acceptable presentation standards Of scholarly work in the above mentioned discipline. Broida, Jacqueline E (Masters, Biological Anthropology) Ancient DNA in Physical Anthropology: A Review Thesis directed by Full Professor Dennis VanGerven The field of ancient DNA began in 1984 with the sequencing of quagga—an extinct member of the horse family—DNA and the development of PCR (Higuchi et al., 1984). Since then, ancient DNA has been used in physical anthropology. Ancient DNA has a variety of applications in anthropology including phylogentic relationships and human evolution, movement and migration, the study of hominin ancestors, sex determination, agriculture, animal domestication, nutrition, diseases, historical kinships, and primate conservation. In particular aDNA technology has given anthropologists the opportunity to study the history and pre-history of the agricultural expansion in the Pacific as well as the ability to learn more about the Neanderthals: what their mitochondrial genome was like, how much their genome differed from the modern human genome, their pigmentation, and their position in hominin phylogeny.
    [Show full text]
  • Norovbanzad's Legacy: Contemporary Concert Long Song in Mongolia Gabrielle Giron
    Florida State University Libraries Electronic Theses, Treatises and Dissertations The Graduate School 2007 Norovbanzad's Legacy: Contemporary Concert Long Song in Mongolia Gabrielle Giron Follow this and additional works at the FSU Digital Library. For more information, please contact [email protected] THE FLORIDA STATE UNIVERSITY COLLEGE OF MUSIC NOROVBANZAD’S LEGACY: CONTEMPORARY CONCERT LONG SONG IN MONGOLIA By Gabrielle Giron A Thesis submitted to the College of Music In partial fulfillment of the Requirements for the degree of Master of Music Degree awarded Fall Semester 2007 Copyright © 2007 Gabrielle C. Giron All Rights Reserved The members of the Committee approve the thesis of Gabrielle Giron defended on August 22, 2007. __________________________________ Michael B. Bakan Professor Directing Thesis __________________________________ Jane Piper Clendinning Outside Committee Member __________________________________ Denise Von Glahn Committee Member __________________________________ Frank Gunderson Committee Member Approved: _______________________________________________ Jeffrey T. Kite-Powell, Professor and Chair, Department of Musicology ________________________________________________ Seth Beckman, Professor, Assistant Dean for Academic Affairs, and Director of Graduate Studies. The Office of Graduate Studies has verified and approved the above named committee members ii Figure 1. The Gentle Sun of the World. Mongolian artist Naiga renders in Mongolian calligraphy the text from Norovbanzad’s song in the shape of a sun. iii In memory of Marian Davis whose love for peace, justice, and beautiful music continues to light the world. iv ACKNOWLEDGEMENTS Many people have assisted me in the exciting process of learning and writing about concert long song. While it would be impossible to name everyone who has contributed to this thesis, there are several people I would like to mention specifically.
    [Show full text]
  • The Earliest Bronze Age Culture of the South-Eastern Gobi Desert, Mongolia
    The earliest Bronze Age culture of the south-eastern Gobi Desert, Mongolia Joshua Wright1,*, Galdan Ganbaatar2, William Honeychurch3, Batdalai Byambatseren2 & Arlene Rosen4 Research Studies of the Eurasian Bronze Age have tended to emphasise the homogeneity of social and political processes across the Steppe, evi- denced by a common ‘package’ of practices and material culture. The Dornod Mongol Survey examines the major stone monumental forms and associated features of the Ulaan- zuukh mortuary tradition of the Gobi region of Mongolia. Combining evidence for mortu- ary and ritual practices, ceramic traditions and new radiocarbon dates, the authors argue that the appearance of the earliest Bronze Age cultures in this region represents a disparate collection of local, regional and inter-regional expressions that challenge the established narrative of a ‘standard’ Eurasian Bronze Age. Keywords: Mongolia, Bronze Age, monumentality, funerary traditions, social hierarchy, place-making The Eurasian Bronze Age is one of the great archaeological horizons of the world. Across the vast grasslands and mountainous regions of the Steppe, mobile populations have left exquisite metallurgy and extensive mortuary monuments (Chernyk 1992; Anthony 1998; Koryakova & Epimakov 2007; Shelach 2009; Hanks 2010; Simpson & Pankova 2017). This article uses regional archaeological data from prehistoric Mongolia to recast the established narrative of a relatively homogeneous Eurasian Bronze Age, based on common social and cultural develop- ments, to one of local agency—a
    [Show full text]