The Evolutionary Consequence of the Individualistic Response to Climate Change
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Ursus Americanus) Versus Brown Bears (U. Arctos
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 5-2017 Black Bears (Ursus americanus) versus Brown Bears (U. arctos): Combining Morphometrics and Niche Modeling to Differentiate Species and Predict Distributions Through Time Theron Michael Kantelis East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Other Environmental Sciences Commons, Paleobiology Commons, and the Paleontology Commons Recommended Citation Kantelis, Theron Michael, "Black Bears (Ursus americanus) versus Brown Bears (U. arctos): Combining Morphometrics and Niche Modeling to Differentiate Species and Predict Distributions Through Time" (2017). Electronic Theses and Dissertations. Paper 3262. https://dc.etsu.edu/etd/3262 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. Black Bears (Ursus americanus) versus Brown Bears (U. arctos): Combining Morphometrics and Niche Modeling to Differentiate Species and Predict Distributions Through Time A thesis presented to the faculty of the Department of Geosciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Geosciences _____________________ -
Dire Wolves Were the Last of an Ancient New World Canid Lineage Angela
Dire wolves were the last of an ancient New World canid lineage Angela R. Perri1,*§, Kieren J. Mitchell2,*§, Alice Mouton3,*, Sandra Álvarez-Carretero4,*, Ardern Hulme-Beaman5,6, James Haile 7, Alexandra Jamieson7, Julie Meachen8, Audrey T. Lin7,9,10, Blaine W. Schubert11, Carly Ameen12, Ekaterina E. Antipina13, Pere Bover14, Selina Brace15, Alberto Carmagnini4, Christian Carøe16, Jose A. Samaniego Castruita16, James C. Chatters17, Keith Dobney5, Mario dos Reis4, Allowen Evin18, Philippe Gaubert19, Shyam Gopalakrishnan16, Graham Gower2, Holly Heiniger2, Kristofer M. Helgen20, Josh Kapp21, Pavel A. Kosintsev22,23, Anna Linderholm7, 24, Andrew T. Ozga25, 26, 27, Samantha Presslee28, Alexander T. Salis2, Nedda F. Saremi21, Colin Shew3, Katherine Skerry26, Dmitry E. Taranenko29, Mary Thompson30, Mikhail V. Sablin31,Yaroslav V. Kuzmin32, 33, Matthew J. Collins34, 35, Mikkel-Holger S. Sinding16, 36, M. Thomas P. Gilbert16, 37, Anne C. Stone25 ,26, Beth Shapiro21, 38, Blaire Van Valkenburgh3, Robert K. Wayne3, Greger Larson7, and Alan Cooper39, Laurent A. F. Frantz4, 40§. 1Department of Archaeology, Durham University, Durham, UK 2Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Australia 3Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA 4School of Biological and Chemical Sciences, Queen Mary University of London, London, UK 5Department of Archaeology, Classics and Egyptology, University of Liverpool, Liverpool, UK 6School of Natural Sciences and Psychology, -
Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia
bioRxiv preprint doi: https://doi.org/10.1101/370122; this version posted July 18, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Modern wolves trace their origin to a late Pleistocene expansion from Beringia 2 Liisa Loog1,2,3*, Olaf Thalmann4†, Mikkel-Holger S. Sinding5,6,7†, Verena J. Schuenemann8,9†, 3 Angela Perri10, Mietje Germonpré11, Herve Bocherens9,12, Kelsey E. Witt13, Jose A. 4 Samaniego Castruita5, Marcela S. Velasco5, Inge K. C. Lundstrøm5, Nathan Wales5, Gontran 5 Sonet15, Laurent Frantz2, Hannes Schroeder5,15, Jane Budd16, Elodie-Laure Jimenez 11, Sergey 6 Fedorov17, Boris Gasparyan18, Andrew W. Kandel19, Martina Lázničková-Galetová20,21,22, 7 Hannes Napierala23, Hans-Peter Uerpmann8, Pavel A. Nikolskiy24,25, Elena Y. Pavlova26,25, 8 Vladimir V. Pitulko25, Karl-Heinz Herzig4,27, Ripan S. Malhi26, Eske Willerslev2,5,29, Anders J. 9 Hansen5,7, Keith Dobney30,31,32, M. Thomas P. Gilbert5,33, Johannes Krause8,34, Greger 10 Larson1*, Anders Eriksson35,2*, Andrea Manica2* 11 12 *Corresponding Authors: L.L. ([email protected]), G.L. ([email protected]), 13 A.E. ([email protected]), A.M. ([email protected]) 14 15 †These authors contributed equally to this work 16 17 1 Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for 18 Archaeology and History of Art, University of Oxford, Dyson Perrins Building, -
Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia
bioRxiv preprint doi: https://doi.org/10.1101/370122; this version posted July 18, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Modern wolves trace their origin to a late Pleistocene expansion from Beringia 2 Liisa Loog1,2,3*, Olaf Thalmann4†, Mikkel-Holger S. Sinding5,6,7†, Verena J. Schuenemann8,9†, 3 Angela Perri10, Mietje Germonpré11, Herve Bocherens9,12, Kelsey E. Witt13, Jose A. 4 Samaniego Castruita5, Marcela S. Velasco5, Inge K. C. Lundstrøm5, Nathan Wales5, Gontran 5 Sonet15, Laurent Frantz2, Hannes Schroeder5,15, Jane Budd16, Elodie-Laure Jimenez 11, Sergey 6 Fedorov17, Boris Gasparyan18, Andrew W. Kandel19, Martina Lázničková-Galetová20,21,22, 7 Hannes Napierala23, Hans-Peter Uerpmann8, Pavel A. Nikolskiy24,25, Elena Y. Pavlova26,25, 8 Vladimir V. Pitulko25, Karl-Heinz Herzig4,27, Ripan S. Malhi26, Eske Willerslev2,5,29, Anders J. 9 Hansen5,7, Keith Dobney30,31,32, M. Thomas P. Gilbert5,33, Johannes Krause8,34, Greger 10 Larson1*, Anders Eriksson35,2*, Andrea Manica2* 11 12 *Corresponding Authors: L.L. ([email protected]), G.L. ([email protected]), 13 A.E. ([email protected]), A.M. ([email protected]) 14 15 †These authors contributed equally to this work 16 17 1 Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for 18 Archaeology and History of Art, University of Oxford, Dyson Perrins Building, -
Dphil Thesis Geraldine Werhahn
Phylogeny and Ecology of the Himalayan Wolf Thesis for the Degree of Doctor of Philosophy in Zoology Geraldine Werhahn Wildlife Conservation Research Unit Department of Zoology University of Oxford Trinity Term 2019 Lady Margaret Hall Supervised by Professor David W. Macdonald, Professor Claudio Sillero-Zubiri & Doctor Helen Senn Dedicated to my mother Béatrice Werhahn and my father Peter Werhahn. Contents Abstract ..........................................................................................................................................7 Acknowledgements ..............................................................................................................12 List of original publications ...................................................................................................15 Author affiliations ..................................................................................................................19 Chapter 1. General Introduction ...................................................................................................21 Thesis objectives ..................................................................................................................31 Thesis structure ....................................................................................................................32 Study areas ..........................................................................................................................33 References ...........................................................................................................................38 -
1 Dire Wolves Were the Last of an Ancient New World Canid Lineage 1
1 Dire wolves were the last of an ancient New World canid lineage 2 3 Angela R. Perri1,*§, Kieren J. Mitchell2,*§, Alice Mouton3,*, Sandra Álvarez-Carretero4,*, Ardern 4 Hulme-Beaman5,6, James Haile 7, Alexandra Jamieson7, Julie Meachen8, Audrey T. Lin7,9,10, 5 Blaine W. Schubert11, Carly Ameen12, Ekaterina E. Antipina13, Pere Bover14, Selina Brace15, 6 Alberto Carmagnini4, Christian Carøe16, Jose A. Samaniego Castruita16, James C. Chatters17, 7 Keith Dobney5, Mario dos Reis4, Allowen Evin18, Philippe Gaubert19, Shyam Gopalakrishnan16, 8 Graham Gower2, Holly Heiniger2, Kristofer M. Helgen20, Josh Kapp21, Pavel A. Kosintsev22,23, 9 Anna Linderholm7, 24, Andrew T. Ozga25, 26, 27, Samantha Presslee28, Alexander T. Salis2, Nedda 10 F. Saremi21, Colin Shew3, Katherine Skerry26, Dmitry E. Taranenko29, Mary Thompson30, Mikhail 11 V. Sablin31,Yaroslav V. Kuzmin32, 33, Matthew J. Collins34, 35, Mikkel-Holger S. Sinding16, 36, M. 12 Thomas P. Gilbert16, 37, Anne C. Stone25 ,26, Beth Shapiro21, 38, Blaire Van Valkenburgh3, Robert 13 K. Wayne3, Greger Larson7, and Alan Cooper39, Laurent A. F. Frantz4, 40§. 14 15 1Department of Archaeology, Durham University, Durham, UK 16 2Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, 17 Australia 18 3Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 19 USA 20 4School of Biological and Chemical Sciences, Queen Mary University of London, London, UK 21 5Department of Archaeology, Classics and Egyptology, University of Liverpool, Liverpool, -
Glacial Ice Ages
JadeWyoming State State Mineral & Gem News Society, Inc. Award-Winning WSMGS Website: wsmgs.org Volume 2021, Issue # 1 Glacial Ice Ages By Emma Groeneveld Ancient History Encyclopedia* An ice age is a period in which the earth's climate is colder than normal, with ice sheets capping the poles and glaciers dominating higher altitudes. Within an ice age, there are varying pulses of colder and warmer climatic conditions, known as “glacials” and “interglacials.” Even within the interglacials, ice continues to cover at least one of the poles. In contrast, outside an ice age, temperatures are higher and more stable, and there is far less ice covering the WSMGS OFFICERS Earth. The Pleistocene Epoch is typically defined as the time period that began President: Jim Gray about 2.6 million years ago and lasted until about 11,700 years ago. The [email protected] Vice President: Linda Richendifer [email protected] Secretary: Leane Gray [email protected] Treasurer: Stan Strike [email protected] Historian: Roger McMannis [email protected] Woolly mammoth is the most recognized of the glacial ice-age animals. Credit: Yukon Beringia, https://beringia.com (Continued on Page 2) Jade State News Editor: Ilene Olson [email protected] Table of Contents Glacial Ice Ages...........................................................................................Page 1 RMFMS WY State Director: Natural Trap Cave........................................................................................Page 5 Jim Gray Wyoming Valley Glaciers............................................................................Page -
1 Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia
1 Modern wolves trace their origin to a late Pleistocene expansion from Beringia 2 Liisa Loog1,2,3*, Olaf Thalmann4†, Mikkel-Holger S. Sinding5,6,7†, Verena J. 3 Schuenemann8,9,10†, Angela Perri11, Mietje Germonpré12, Herve Bocherens9,13, Kelsey E. 4 Witt14, Jose A. Samaniego Castruita5, Marcela S. Velasco5, Inge K. C. Lundstrøm5, Nathan 5 Wales5, Gontran Sonet15, Laurent Frantz2, Hannes Schroeder5,16, Jane Budd17, Elodie-Laure 6 Jimenez 12, Sergey Fedorov18, Boris Gasparyan19, Andrew W. Kandel20, Martina Lázničková- 7 Galetová21,22,23, Hannes Napierala24, Hans-Peter Uerpmann8, Pavel A. Nikolskiy25,26, Elena Y. 8 Pavlova27,26, Vladimir V. Pitulko26, Karl-Heinz Herzig4,28, Ripan S. Malhi29, Eske 9 Willerslev2,5,30, Anders J. Hansen5,7, Keith Dobney31,32,33, M. Thomas P. Gilbert5,34, Johannes 10 Krause8,35, Greger Larson1*, Anders Eriksson36,2*, Andrea Manica2* 11 12 *Corresponding Authors: L.L. ([email protected]), G.L. ([email protected]), 13 A.E. ([email protected]), A.M. ([email protected]) 14 15 †These authors contributed equally to this work 16 17 1 Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for 18 Archaeology and History of Art, University of Oxford, Dyson Perrins Building, South Parks 19 Road, Oxford OX1 3QY, UK 20 2 Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, 21 UK 22 3 Manchester Institute of Biotechnology, School of Earth and Environmental Sciences, 23 University of Manchester, Manchester, M1 7DN, UK 24 4 Department of Pediatric Gastroenterology and Metabolic Diseases, Poznan University of 25 Medical Sciences, Szpitalna 27/33, 60-572 Poznan, Poland 26 5 Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 27 Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark 28 6 Natural History Museum, University of Oslo, P.O. -
Ancient DNA Suggests Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia
Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia Loog, Liisa; Thalmann, Olaf; Sinding, Mikkel Holger S.; Schuenemann, Verena J.; Perri, Angela; Germonpré, Mietje; Bocherens, Hervé; Witt, Kelsey E.; Samaniego Castruita, Jose A.; Velasco, Marcela S.; Lundstrøm, Inge K.C.; Wales, Nathan; Sonet, Gontran; Frantz, Laurent; Schroeder, Hannes; Budd, Jane; Jimenez, Elodie Laure; Fedorov, Sergey; Gasparyan, Boris; Kandel, Andrew W.; Lázniková-Galetová, Martina; Napierala, Hannes; Uerpmann, Hans Peter; Nikolskiy, Pavel A.; Pavlova, Elena Y.; Pitulko, Vladimir V.; Herzig, Karl-Heinz; Malhi, Ripan S.; Willerslev, Eske; Hansen, Anders J.; Dobney, Keith; Gilbert, M. Thomas P.; Krause, Johannes; Larson, Greger; Eriksson, Anders; Manica, Andrea Published in: Molecular Ecology DOI: 10.1111/mec.15329 Publication date: 2020 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Loog, L., Thalmann, O., Sinding, M. H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E. L., Fedorov, S., Gasparyan, B., ... Manica, A. (2020). Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology, 29(9), 1596-1610. https://doi.org/10.1111/mec.15329 Download date: 23. sep.. 2021 Received: 5 October 2018 | Revised: 16 October 2019 | Accepted: 3 December 2019 DOI: 10.1111/mec.15329 FROM THE COVER Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia Liisa Loog1,2,3,4 | Olaf Thalmann5 | Mikkel-Holger S. -
Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia”
SUPPLEMENTARY INFORMATION FOR LOOG ET AL. 2017 “MODERN WOLVES TRACE THEIR ORIGIN TO A LATE PLEISTOCENE EXPANSION FROM BERINGIA” S1 – ARCHAEOLOGICAL BACKGROUND AND SAMPLE INFORMATION 2 1.1 PALEONTOLOGICAL HISTORY OF GREY WOLVES 2 1.2 ARCHAEOLOGICAL SITE DESCRIPTIONS 7 ARMENIA 7 BELGIUM 7 CZECH REPUBLIC 10 SWITZERLAND 10 RUSSIA 11 S2 – DNA EXTRACTION, SEQUENCING AND BIOINFORMATICS. 23 2.1 DNA EXTRACTIONS 23 2.2 LIBRARY PREPARATION 24 2.3 SEQUENCE GENERATION 27 2.4 RAW SEQUENCE DATA PROCESSING 28 2.5. MOLECULAR CHARACTERISTICS OF NEWLY GENERATED, ANCIENT SEQUENCES 30 Table S2 31 Figure S1 32 Figure S2 33 S3 – DATA ANALYSES & RESULTS 36 3.1 BEAST ANALYSES & RESULTS 36 PARTITION FINDER 36 Table S3 36 MUTATION RATE CALCULATION 37 INPUT FILE SETTINGS 37 PRIORS 38 MCMC CHAIN 38 BEAST RESULTS 38 Table S4 39 Table S5 39 3.2 SPATIAL MODELLING RESULTS 39 Table S6 39 Table S7 40 Table S8 40 3.3 SUPPLEMENTARY FIGURES 42 Figure S3 42 Figure S4 43 Figure S5 44 Figure S6 45 Figure S7 46 Figure S8 47 Figure S9 48 Figure S10 49 Figure S11 50 Figure S12 51 Figure S13 52 Figure S14 53 Figure S15 54 Figure S16 55 1 S1 – Archaeological Background and Sample Information 1.1 Paleontological history of grey wolves Grey wolves (Canis lupus) are a highly adaptable species, able to live in a range of environments and with a wide natural distribution. Studies of modern grey wolves have found distinct subpopulations living in close proximity (Musani et al., 2007; Schweizer et al., 2016). This variation is closely linked to differences in habitat - specifically precipitation, temperature, vegetation, and prey specialization, which particularly affect cranio-dental plasticity (Geffen et al., 2004; Pilot et al., 2006; Flower and Schreve, 2014; Leonard, 2015). -
Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia
bioRxiv preprint first posted online Jul. 18, 2018; doi: http://dx.doi.org/10.1101/370122. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license. 1 Modern wolves trace their origin to a late Pleistocene expansion from Beringia 2 Liisa Loog1,2,3*, Olaf Thalmann4†, Mikkel-Holger S. Sinding5,6,7†, Verena J. Schuenemann8,9†, 3 Angela Perri10, Mietje Germonpré11, Herve Bocherens9,12, Kelsey E. Witt13, Jose A. 4 Samaniego Castruita5, Marcela S. Velasco5, Inge K. C. Lundstrøm5, Nathan Wales5, Gontran 5 Sonet15, Laurent Frantz2, Hannes Schroeder5,15, Jane Budd16, Elodie-Laure Jimenez 11, Sergey 6 Fedorov17, Boris Gasparyan18, Andrew W. Kandel19, Martina Lázničková-Galetová20,21,22, 7 Hannes Napierala23, Hans-Peter Uerpmann8, Pavel A. Nikolskiy24,25, Elena Y. Pavlova26,25, 8 Vladimir V. Pitulko25, Karl-Heinz Herzig4,27, Ripan S. Malhi26, Eske Willerslev2,5,29, Anders J. 9 Hansen5,7, Keith Dobney30,31,32, M. Thomas P. Gilbert5,33, Johannes Krause8,34, Greger 10 Larson1*, Anders Eriksson35,2*, Andrea Manica2* 11 12 *Corresponding Authors: L.L. ([email protected]), G.L. ([email protected]), 13 A.E. ([email protected]), A.M. ([email protected]) 14 15 †These authors contributed equally to this work 16 17 1 Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for 18 Archaeology and History of Art, University of Oxford, Dyson Perrins Building, South Parks 19 Road, Oxford OX1 3QY, UK 20 2 Department of Zoology, University -
Dire Wolves Were the Last of an Ancient New World Canid Lineage
Article Dire wolves were the last of an ancient New World canid lineage https://doi.org/10.1038/s41586-020-03082-x Angela R. Perri1,44 ✉, Kieren J. Mitchell2,44 ✉, Alice Mouton3,44, Sandra Álvarez-Carretero4,44, Ardern Hulme-Beaman5,6, James Haile7, Alexandra Jamieson7, Julie Meachen8, Received: 14 April 2020 Audrey T. Lin7,9,10, Blaine W. Schubert11, Carly Ameen12, Ekaterina E. Antipina13, Pere Bover14, Accepted: 12 November 2020 Selina Brace15, Alberto Carmagnini4, Christian Carøe16, Jose A. Samaniego Castruita16, James C. Chatters17, Keith Dobney5,18,19,20, Mario dos Reis4, Allowen Evin21, Philippe Gaubert22, Published online: xx xx xxxx Shyam Gopalakrishnan16, Graham Gower2, Holly Heiniger2, Kristofer M. Helgen23, Check for updates Josh Kapp24, Pavel A. Kosintsev25,26, Anna Linderholm7,27, Andrew T. Ozga28,29,30, Samantha Presslee31, Alexander T. Salis2, Nedda F. Saremi24, Colin Shew3, Katherine Skerry29, Dmitry E. Taranenko32, Mary Thompson33, Mikhail V. Sablin34, Yaroslav V. Kuzmin35,36, Matthew J. Collins16,37, Mikkel-Holger S. Sinding16,38, M. Thomas P. Gilbert16,39, Anne C. Stone28,29,40, Beth Shapiro24,41, Blaire Van Valkenburgh3, Robert K. Wayne3, Greger Larson7, Alan Cooper42 & Laurent A. F. Frantz4,43 ✉ Dire wolves are considered to be one of the most common and widespread large carnivores in Pleistocene America1, yet relatively little is known about their evolution or extinction. Here, to reconstruct the evolutionary history of dire wolves, we sequenced fve genomes from sub-fossil remains dating from 13,000 to more than 50,000 years ago. Our results indicate that although they were similar morphologically to the extant grey wolf, dire wolves were a highly divergent lineage that split from living canids around 5.7 million years ago.