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Journal of Systematics and Evolution
Journal of Systematics JSE and Evolution doi: 10.1111/jse.12503 Research Article Substrate switches, phenotypic innovations and allopatric speciation formed taxonomic diversity within the lichen genus Blastenia Jan Vondrák1,2* , Ivan Frolov2,3,JiříKošnar2, Ulf Arup4, Tereza Veselská5, Gökhan Halıcı6,Jiří Malíček1, and Ulrik Søchting7 1Institute of Botany of the Czech Academy of Sciences, Průhonice CZ‐252 43, Czech Republic 2Department of Botany, Faculty of Science, University of South Bohemia, České Budějovice CZ‐370 05, Czech Republic 3Russian Academy of Sciences, Ural Branch: Institute Botanic Garden, Vosmogo Marta 202a st., Yekaterinburg 620144, Russia 4Botanical Museum, Lund University, Lund SE‐221 00, Sweden 5Institute of Microbiology, Academy of Sciences of the Czech Republic, Praha 4‐Krč CZ‐142 20, Czech Republic 6Gökhan Halıcı, Department of Biology, Faculty of Science, Erciyes University, Kayseri 38039, Turkey 7Department of Biology, Section for Ecology and Evolution, University of Copenhagen, Copenhagen DK‐2100, Denmark *Author for correspondence. E‐mail: [email protected]; Tel.: 420776280011. Received 9 January 2019; Accepted 11 April 2019; Article first published online 29 April 2019 Abstract Blastenia is a widely distributed lichen genus in Teloschistaceae. We reconstructed its phylogeny in order to test species delimitation and to find evolutionary drivers forming recent Blastenia diversity. The origin of Blastenia is dated to the early Tertiary period, but later diversification events are distinctly younger. We recognized 24 species (plus 2 subspecies) within 6 infrageneric groups. Each species strongly prefers a single type of substrate (17 species occur on organic substrates, 7 on siliceous rock), and most infrageneric groups also show a clear substrate preference. -
Molecular Phylogenetic Study at the Generic Boundary Between the Lichen-Forming Fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae)
Mycol. Res. 107 (11): 1266–1276 (November 2003). f The British Mycological Society 1266 DOI: 10.1017/S0953756203008529 Printed in the United Kingdom. Molecular phylogenetic study at the generic boundary between the lichen-forming fungi Caloplaca and Xanthoria (Ascomycota, Teloschistaceae) Ulrik SØCHTING1 and Franc¸ ois LUTZONI2 1 Department of Mycology, Botanical Institute, University of Copenhagen, O. Farimagsgade 2D, DK-1353 Copenhagen K, Denmark. 2 Department of Biology, Duke University, Durham, NC 27708-0338, USA. E-mail : [email protected] Received 5 December 2001; accepted 5 August 2003. A molecular phylogenetic analysis of rDNA was performed for seven Caloplaca, seven Xanthoria, one Fulgensia and five outgroup species. Phylogenetic hypotheses are constructed based on nuclear small and large subunit rDNA, separately and in combination. Three strongly supported major monophyletic groups were revealed within the Teloschistaceae. One group represents the Xanthoria fallax-group. The second group includes three subgroups: (1) X. parietina and X. elegans; (2) basal placodioid Caloplaca species followed by speciations leading to X. polycarpa and X. candelaria; and (3) a mixture of placodioid and endolithic Caloplaca species. The third main monophyletic group represents a heterogeneous assemblage of Caloplaca and Fulgensia species with a drastically different metabolite content. We report here that the two genera Caloplaca and Xanthoria, as well as the subgenus Gasparrinia, are all polyphyletic. The taxonomic significance of thallus morphology in Teloschistaceae and the current delimitation of the genus Xanthoria is discussed in light of these results. INTRODUCTION Taxonomy of Teloschistaceae and its genera The Teloschistaceae is a well-delimited family of Hawksworth & Eriksson (1986) assigned the Teloschis- lichenized fungi. -
Epidemiology of Parkinson's Disease in the Southern Ukraine
— !!!cifra_MNJ_№5_(tom16)_2020 01.07. Белоусова 07.07.Евдокимова ОРИГІНАЛЬНІ ДОСЛІДЖЕННЯ /ORIGINAL RESEARCHES/ UDC 616.858-036.22 DOI: 10.22141/2224-0713.16.5.2020.209248 I.V. Hubetova Odessa Regional Clinical Hospital, Odesa, Ukraine Odessa National Medical University, Odesa, Ukraine Epidemiology of Parkinson’s disease in the Southern Ukraine Abstract. Background. Parkinson’s disease (PD) is a slowly progressing neurodegenerative disease with accumulation of alpha-synuclein and the formation of Lewy bodies inside nerve cells. The prevalence of PD ranges from 100 to 200 cases per 100,000 population. However, in the Ukrainian reality, many cases of the disease remain undiagnosed, which affects the statistical indicators of incidence and prevalence. The purpose of the study is to compare PD epidemiological indices in the Southern Ukraine with all-Ukrainian rates. Material and methods. Statistical data of the Ministry of Health of Ukraine, public health departments of Odesa, Mykolaiv and Kherson regions for 2015–2017 were analyzed. There were used the methods of descriptive statistics and analysis of variance. Results. Average prevalence of PD in Ukraine is 67.5 per 100,000 population — it is close to the Eastern European rate. The highest prevalence was registered in Lviv (142.5 per 100,000), Vinnytsia (135.9 per 100,000), Cherkasy (108.6 per 100,000) and Kyiv (107.1 per 100,000) regions. The lowest rates were in Luhansk (37.9 per 100,000), Kyrovohrad (42.5 per 100,000), Chernivtsi (49.0 per 100,000) and Ternopil (49.6 per 100,000) regions. In the Southern Ukraine, the highest prevalence of PD was found in Mykolaiv region. -
Interface Between Fungi and Green Algae in Lichen Associations
Botany Interface between fungi and green algae in lichen associations Journal: Botany Manuscript ID cjb-2017-0037.R2 Manuscript Type: Review Date Submitted by the Author: 07-May-2017 Complete List of Authors: Piercey-Normore, Michele; Memorial University of NL, Science and the Environment Athukorala,Draft Sarangi; University of Peradeniya, Department of Botany Is the invited manuscript for consideration in a Special Fungi on the Edge Issue? : Keyword: interaction, lichen fungi, resynthesis, symbiont communication https://mc06.manuscriptcentral.com/botany-pubs Page 1 of 34 Botany 1 Mini review - Botany Interface between fungi and green algae in lichen associations Michele D. Piercey-Normore 1 and Sarangi N. P. Athukorala 2 1School of Science and the Environment, Memorial University of NL (Grenfell campus), Corner Brook, NL, Canada, A2K 5G4, [email protected] 2Department of Botany, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka, 20400, [email protected] Draft Corresponding author: M. D. Piercey-Normore, School of Science and the Environment, Memorial University of NL (Grenfell campus), Corner Brook, NL, Canada, A2K 5G4, email: mpiercey- [email protected] , phone: (709) 637-7166. https://mc06.manuscriptcentral.com/botany-pubs Botany Page 2 of 34 2 Abstract It is widely recognized that the lichen is the product of a fungus and a photosynthetic partner (green alga or cyanobacterium) but its acceptance was slow to develop throughout history. The development of powerful microscopic and other lab techniques enabled better understanding of the interface between symbionts beginning with the contentious concept of the dual nature of the lichen thallus. Even with accelerating progress in understanding the interface between symbionts, much more work is needed to reach a level of knowledge consistent with that of other fungal interactions. -
New Records of Crustose Teloschistaceae (Lichens, Ascomycota) from the Murmansk Region of Russia
vol. 37, no. 3, pp. 421–434, 2016 doi: 10.1515/popore-2016-0022 New records of crustose Teloschistaceae (lichens, Ascomycota) from the Murmansk region of Russia Ivan FROLOV1* and Liudmila KONOREVA2,3 1 Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, CZ-37005, Czech Republic 2 Laboratory of Flora and Vegetations, The Polar-Alpine Botanical Garden and Institute KSC RAS, Kirovsk, Murmansk region, 184209, Russia 3 Laboratory of Lichenology and Bryology, Komarov Botanical Institute RAS, Professor Popov St. 2, St. Petersburg, 197376, Russia * corresponding author <[email protected]> Abstract: Twenty-three species of crustose Teloschistaceae were collected from the northwest of the Murmansk region of Russia during field trips in 2013 and 2015. Blas- tenia scabrosa is a new combination supported by molecular data. Blastenia scabrosa, Caloplaca fuscorufa and Flavoplaca havaasii are new to Russia. Blastenia scabrosa is also new to the Caucasus Mts and Sweden. Detailed morphological measurements of the Russian specimens of these species are provided. Caloplaca exsecuta, C. grimmiae and C. sorocarpa are new to the Murmansk region. The taxonomic position of C. alcarum is briefly discussed. Key words: Arctic, Rybachy Peninsula, Caloplaca s. lat., Blastenia scabrosa. Introduction Although the Murmansk region is one of the best studied regions of Russia in terms of lichen diversity, there are numerous reports in recent literature of new discoveries there (e.g. Fadeeva et al. 2013; Konoreva 2015; Melechin 2015; Urbanavichus 2015). Several localities in the northwest of the Murmansk region, mainly on the Pechenga Tundra Mountains and the Rybachy Peninsula, were visited in 2013 and 2015. -
GE06 Publication
BR IFIC Nº 2653 Special Section GE06/36 Date : 22.09.2009 International Frequency Information Circular (Terrestrial Services) Radiocommunication Bureau Date of limit for comments on Part A pursuant to §4.1.2.9 or §4.1.3.1 : 01.11.2009 Date of limit for comments on Part A pursuant to §4.1.4.9: 06.12.2009 Comments should be sent directly to the Administration originating the proposal and to the Bureau. Information included in the columns Column App. Description of columns number 4 1 -- BR identification number 2 B ITU symbol for the administration responsible for the submission 3 1a Assigned frequency 4 Frequency block/Channel number 5 Unique identification code given by the administration for the assignment/allotment (AdminRefId) 6 4b ITU symbol for the geographical area 7 Intent 8 4a Name of the location of the transmitting station/allotment Notice type GS1 – Digital sound (T-DAB) broadcasting assignment GS2 – Digital sound (T-DAB) broadcasting allotment 9 GT1 – Digital television (DVB-T) broadcasting assignment GT2 – Digital television (DVB-T) broadcasting allotment G02 - Analogue television broadcasting assignment 10 Plan entry code 11 Unique identification code for the associated allotment 12 Allotment reference network (RN1-RN6) 13 8BH Maximum effective radiated power of the horizontally polarized component in the horizontal plane (dBW) 14 8BV Maximum effective radiated power of the vertically polarized component in the horizontal plane (dBW) 15 ITU symbols of administrations considered to be affected ITU symbol designating the administration with which coordination has been successfully completed, as indicated by 16 the administration responsible for the submission. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
BELARUS 245 OP342 the Lichenized Fungus Genus
OP342 The Lichenized Fungus Genus Gyalolechia (Teloschistales, Ascomycota) in Turkey Mehmet Gökhan HALICI1& Mithat GÜLLÜ1 1Erciyes University, Faculty of Science, Department of Biology, Kayseri, TURKEY [email protected] Aim of the study: This study has been made to examine as phylogenetic relationships of some species belong to genus Gyalolechia Trevis., which widely spreaded in our country. Material and Methods: Samples of lichens belonging to genus Gyalolechia were collected from different parts of Turkey.Total DNA was extracted from apothecia by using the DNeasy Plant Mini Kit (Qiagen) according to the manufacturer’s instructions. PCR analysis was performed by using ITS (ITS1 and ITS4).ITS sequence results of lichen samples were analysed by using Clustal W option in the BioEdit program. The phylogenetic analysis of lichen samples belonging to genus Gyalolechia were performed by using the Maximum Likelihood method of the Mega 6 (Molecular Evolutionary Genetics Analysis) software program. Results: Gyalolechia was recently established to accommodate a monophyletic group of crustose lichens of Teloschistaceae that were formerly placed in the large genus Caloplaca. Members of this genus usually have well developed thalli which are crustose, squamulose or lobate. In this study, numbers of samples belonging to this genus collected from Turkey. After morphological examinations; molecular analyses of ITS nrDNA were carried in the samples. This genus is represented by 25 species in Turkey and 6 of them are present in Turkey:G. flavorubescens, G. flavovirescens, G. fulgida, G. juniperina, G. klementii and G. subbracteata. In this presentation we will discuss the morphological and ecological characters of these species along with distributional data of the species in Turkey. -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Huneckia Pollinii </I> and <I> Flavoplaca Oasis
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2017 October–December 2017—Volume 132, pp. 895–901 https://doi.org/10.5248/132.895 Huneckia pollinii and Flavoplaca oasis newly recorded from China Cong-Cong Miao 1#, Xiang-Xiang Zhao1#, Zun-Tian Zhao1, Hurnisa Shahidin2 & Lu-Lu Zhang1* 1 Key Laboratory of Plant Stress Research, College of Life Sciences, Shandong Normal University, Jinan, 250014, P. R. China 2 Lichens Research Center in Arid Zones of Northwestern China, College of Life Science and Technology, Xinjiang University, Xinjiang , 830046 , P. R. China * Correspondence to: [email protected] Abstract—Huneckia pollinii and Flavoplaca oasis are described and illustrated from Chinese specimens. The two species and the genus Huneckia are recorded for the first time from China. Keywords—Asia, lichens, taxonomy, Teloschistaceae Introduction Teloschistaceae Zahlbr. is one of the larger families of lichenized fungi. It includes three subfamilies, Caloplacoideae, Teloschistoideae, and Xanthorioideae (Gaya et al. 2012; Arup et al. 2013). Many new genera have been proposed based on molecular phylogenetic investigations (Arup et al. 2013; Fedorenko et al. 2012; Gaya et al. 2012; Kondratyuk et al. 2013, 2014a,b, 2015a,b,c,d). Currently, the family contains approximately 79 genera (Kärnefelt 1989; Arup et al. 2013; Kondratyuk et al. 2013, 2014a,b, 2015a,b,c,d; Søchting et al. 2014a,b). Huneckia S.Y. Kondr. et al. was described in 2014 (Kondratyuk et al. 2014a) based on morphological, anatomical, chemical, and molecular data. It is characterized by continuous to areolate thalli, paraplectenchymatous cortical # Cong-Cong Miao & Xiang-Xiang Zhao contributed equally to this research. -
Specific Fungal-Algal Interaction in Usnea Hakonensis
Kono et al. BMC Genomics (2020) 21:671 https://doi.org/10.1186/s12864-020-07086-9 RESEARCH ARTICLE Open Access In vitro resynthesis of lichenization reveals the genetic background of symbiosis- specific fungal-algal interaction in Usnea hakonensis Mieko Kono1,2* , Yoshiaki Kon3, Yoshihito Ohmura4, Yoko Satta1 and Yohey Terai1 Abstract Background: Symbiosis is central to ecosystems and has been an important driving force of the diversity of life. Close and long-term interactions are known to develop cooperative molecular mechanisms between the symbiotic partners and have often given them new functions as symbiotic entities. In lichen symbiosis, mutualistic relationships between lichen-forming fungi and algae and/or cyanobacteria produce unique features that make lichens adaptive to a wide range of environments. Although the morphological, physiological, and ecological uniqueness of lichens has been described for more than a century, the genetic mechanisms underlying this symbiosis are still poorly known. Results: This study investigated the fungal-algal interaction specific to the lichen symbiosis using Usnea hakonensis as a model system. The whole genome of U. hakonensis, the fungal partner, was sequenced by using a culture isolated from a natural lichen thallus. Isolated cultures of the fungal and the algal partners were co-cultured in vitro for 3 months, and thalli were successfully resynthesized as visible protrusions. Transcriptomes of resynthesized and natural thalli (symbiotic states) were compared to that of isolated cultures (non-symbiotic state). Sets of fungal and algal genes up-regulated in both symbiotic states were identified as symbiosis-related genes. Conclusion: From predicted functions of these genes, we identified genetic association with two key features fundamental to the symbiotic lifestyle in lichens.