A Review of the Biological and Clinical Implications of RAS-MAPK Pathway Alterations in Neuroblastoma
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Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling
G C A T T A C G G C A T genes Review Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling Aoife A. Nolan 1, Nourhan K. Aboud 1, Walter Kolch 1,2,* and David Matallanas 1,* 1 Systems Biology Ireland, School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland; [email protected] (A.A.N.); [email protected] (N.K.A.) 2 Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland * Correspondence: [email protected] (W.K.); [email protected] (D.M.) Abstract: Oncogenic RAS (Rat sarcoma) mutations drive more than half of human cancers, and RAS inhibition is the holy grail of oncology. Thirty years of relentless efforts and harsh disappointments have taught us about the intricacies of oncogenic RAS signalling that allow us to now get a pharma- cological grip on this elusive protein. The inhibition of effector pathways, such as the RAF-MEK-ERK pathway, has largely proven disappointing. Thus far, most of these efforts were aimed at blocking the activation of ERK. Here, we discuss RAF-dependent pathways that are regulated through RAF functions independent of catalytic activity and their potential role as targets to block oncogenic RAS signalling. We focus on the now well documented roles of RAF kinase-independent functions in apoptosis, cell cycle progression and cell migration. Keywords: RAF kinase-independent; RAS; MST2; ASK; PLK; RHO-α; apoptosis; cell cycle; cancer therapy Citation: Nolan, A.A.; Aboud, N.K.; Kolch, W.; Matallanas, D. Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling. -
Atlas Antibodies in Breast Cancer Research Table of Contents
ATLAS ANTIBODIES IN BREAST CANCER RESEARCH TABLE OF CONTENTS The Human Protein Atlas, Triple A Polyclonals and PrecisA Monoclonals (4-5) Clinical markers (6) Antibodies used in breast cancer research (7-13) Antibodies against MammaPrint and other gene expression test proteins (14-16) Antibodies identified in the Human Protein Atlas (17-14) Finding cancer biomarkers, as exemplified by RBM3, granulin and anillin (19-22) Co-Development program (23) Contact (24) Page 2 (24) Page 3 (24) The Human Protein Atlas: a map of the Human Proteome The Human Protein Atlas (HPA) is a The Human Protein Atlas consortium cell types. All the IHC images for Swedish-based program initiated in is mainly funded by the Knut and Alice the normal tissue have undergone 2003 with the aim to map all the human Wallenberg Foundation. pathology-based annotation of proteins in cells, tissues and organs expression levels. using integration of various omics The Human Protein Atlas consists of technologies, including antibody- six separate parts, each focusing on References based imaging, mass spectrometry- a particular aspect of the genome- 1. Sjöstedt E, et al. (2020) An atlas of the based proteomics, transcriptomics wide analysis of the human proteins: protein-coding genes in the human, pig, and and systems biology. mouse brain. Science 367(6482) 2. Thul PJ, et al. (2017) A subcellular map of • The Tissue Atlas shows the the human proteome. Science. 356(6340): All the data in the knowledge resource distribution of proteins across all eaal3321 is open access to allow scientists both major tissues and organs in the 3. -
Application of a MYC Degradation
SCIENCE SIGNALING | RESEARCH ARTICLE CANCER Copyright © 2019 The Authors, some rights reserved; Application of a MYC degradation screen identifies exclusive licensee American Association sensitivity to CDK9 inhibitors in KRAS-mutant for the Advancement of Science. No claim pancreatic cancer to original U.S. Devon R. Blake1, Angelina V. Vaseva2, Richard G. Hodge2, McKenzie P. Kline3, Thomas S. K. Gilbert1,4, Government Works Vikas Tyagi5, Daowei Huang5, Gabrielle C. Whiten5, Jacob E. Larson5, Xiaodong Wang2,5, Kenneth H. Pearce5, Laura E. Herring1,4, Lee M. Graves1,2,4, Stephen V. Frye2,5, Michael J. Emanuele1,2, Adrienne D. Cox1,2,6, Channing J. Der1,2* Stabilization of the MYC oncoprotein by KRAS signaling critically promotes the growth of pancreatic ductal adeno- carcinoma (PDAC). Thus, understanding how MYC protein stability is regulated may lead to effective therapies. Here, we used a previously developed, flow cytometry–based assay that screened a library of >800 protein kinase inhibitors and identified compounds that promoted either the stability or degradation of MYC in a KRAS-mutant PDAC cell line. We validated compounds that stabilized or destabilized MYC and then focused on one compound, Downloaded from UNC10112785, that induced the substantial loss of MYC protein in both two-dimensional (2D) and 3D cell cultures. We determined that this compound is a potent CDK9 inhibitor with a previously uncharacterized scaffold, caused MYC loss through both transcriptional and posttranslational mechanisms, and suppresses PDAC anchorage- dependent and anchorage-independent growth. We discovered that CDK9 enhanced MYC protein stability 62 through a previously unknown, KRAS-independent mechanism involving direct phosphorylation of MYC at Ser . -
RAF Protein-Serine/Threonine Kinases: Structure and Regulation
Biochemical and Biophysical Research Communications 399 (2010) 313–317 Contents lists available at ScienceDirect Biochemical and Biophysical Research Communications journal homepage: www.elsevier.com/locate/ybbrc Mini Review RAF protein-serine/threonine kinases: Structure and regulation Robert Roskoski Jr. * Blue Ridge Institute for Medical Research, 3754 Brevard Road, Suite 116, Box 19, Horse Shoe, NC 28742, USA article info abstract Article history: A-RAF, B-RAF, and C-RAF are a family of three protein-serine/threonine kinases that participate in the Received 12 July 2010 RAS-RAF-MEK-ERK signal transduction cascade. This cascade participates in the regulation of a large vari- Available online 30 July 2010 ety of processes including apoptosis, cell cycle progression, differentiation, proliferation, and transforma- tion to the cancerous state. RAS mutations occur in 15–30% of all human cancers, and B-RAF mutations Keywords: occur in 30–60% of melanomas, 30–50% of thyroid cancers, and 5–20% of colorectal cancers. Activation 14-3-3 of the RAF kinases requires their interaction with RAS-GTP along with dephosphorylation and also phos- ERK phorylation by SRC family protein-tyrosine kinases and other protein-serine/threonine kinases. The for- GDC-0879 mation of unique side-to-side RAF dimers is required for full kinase activity. RAF kinase inhibitors are MEK Melanoma effective in blocking MEK1/2 and ERK1/2 activation in cells containing the oncogenic B-RAF Val600Glu PLX4032 activating mutation. RAF kinase inhibitors lead to the paradoxical increase in RAF kinase activity in cells PLX4720 containing wild-type B-RAF and wild-type or activated mutant RAS. -
Mutation-Specific RAS Oncogenicity Explains NRAS Codon 61 Selection in Melanoma
Published OnlineFirst September 24, 2014; DOI: 10.1158/2159-8290.CD-14-0729 reseArch Article Mutation-Specific RAS Oncogenicity Explains NRAS Codon 61 Selection in Melanoma Christin E. Burd1,2, Wenjin Liu3,4, Minh V. Huynh5, Meriam A. Waqas1, James E. Gillahan1,2, Kelly S. Clark3,4, Kailing Fu3,4, Brit L. Martin1, William R. Jeck3,4,. George P Souroullas3,4, David B. Darr3,4, Daniel C. Zedek6, Michael J. Miley7, Bruce C. Baguley8, Sharon L. Campbell4,5, and Norman E. Sharpless3,4 Abstrt Ac NRAS mutation at codons 12, 13, or 61 is associated with transformation; yet, in melanoma, such alterations are nearly exclusive to codon 61. Here, we compared the melanoma susceptibility of an NrasQ61R knock-in allele to similarly designed KrasG12D and NrasG12D alleles. With concomitant p16INK4a inactivation, KrasG12D or NrasQ61R expression efficiently promoted melanoma in vivo, whereas NrasG12D did not. In addition, NrasQ61R mutation potently cooperated with Lkb1/Stk11 loss to induce highly metastatic disease. Functional comparisons of NrasQ61R and NrasG12D revealed little difference in the ability of these proteins to engage PI3K or RAF. Instead, NrasQ61R showed enhanced nucleotide binding, decreased intrinsic GTPase activity, and increased stability when compared with NrasG12D. This work identifies a faithful model of human NRAS-mutant melanoma, and suggests that the increased melanomagenecity of NrasQ61R over NrasG12D is due to heightened abundance of the active, GTP-bound form rather than differences in the engagement of downstream effector pathways. SIGNIFICANCE: This work explains the curious predominance in human melanoma of mutations of codon 61 of NRAS over other oncogenic NRAS mutations. -
Combined Inhibition of MEK and Plk1 Has Synergistic Anti-Tumor Activity in NRAS Mutant Melanoma
Combined inhibition of MEK and Plk1 has synergistic anti-tumor activity in NRAS mutant melanoma The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Posch, C., B. Cholewa, I. Vujic, M. Sanlorenzo, J. Ma, S. Kim, S. Kleffel, et al. 2015. “Combined inhibition of MEK and Plk1 has synergistic anti-tumor activity in NRAS mutant melanoma.” The Journal of investigative dermatology 135 (10): 2475-2483. doi:10.1038/jid.2015.198. http://dx.doi.org/10.1038/jid.2015.198. Published Version doi:10.1038/jid.2015.198 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:26860102 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA HHS Public Access Author manuscript Author Manuscript Author ManuscriptJ Invest Author ManuscriptDermatol. Author Author Manuscript manuscript; available in PMC 2016 April 01. Published in final edited form as: J Invest Dermatol. 2015 October ; 135(10): 2475–2483. doi:10.1038/jid.2015.198. Combined inhibition of MEK and Plk1 has synergistic anti-tumor activity in NRAS mutant melanoma C Posch#1,2,3,*, BD Cholewa#4, I Vujic1,3, M Sanlorenzo1,5, J Ma1, ST Kim1, S Kleffel2, T Schatton2, K Rappersberger3, R Gutteridge4, N Ahmad4, and S Ortiz/Urda1 1 University of California San Francisco, Department of Dermatology, Mt. Zion Cancer Research -
Interaction Between the Protein Kinase B-Raf and the A-Subunit of the IIS Proteasome Regulator1
(CANCER RESEARCH 58. 2986-2990, July 15, I998| Advances in Brief Interaction between the Protein Kinase B-Raf and the a-Subunit of the IIS Proteasome Regulator1 Andreas Kalmes,2 Garsten Hagemann,2 Christoph K. Weber, Ludmilla Wixler, Tillman Schuster, and Ulf R. Kapp* InstituÃfürMedizinische Strahlenkunde und Zettforschung (MSZ). University of Würzburg,97078 Würzburg,Germany ¡C.H.. C. K. W.. L. W.. T. S.. U. K. R.], and Department of Surgery, University of Washington, Seattle. Washington 9SI95 ¡A.KJ Abstract using the yeast two-hybrid system. In addition to the already known B-Raf-binding proteins (MEK and several 14-3-3 isoforms), we iso Protein kinases of the Raf family act as signal-transducing elements lated PA28a, the subunit of the 1IS proteasome regulator (11, 12), as downstream of activated cell surface receptors and are involved in the a novel B-Raf-binding partner. regulation of proliferation, differentiation, and cell survival. Whereas the role of c-Raf-1 as a mitogen-activated protein/extracellular signal-regu The 11S regulator is one of two known activators of the 20S lated kinase activator within the mitogenic cascade is well established, less proteasome (13). Both of these activators seem to possess different is known about the mammalian Raf isoforins A-Raf and B-Raf. Here we functions in vivo. The PA700 activator complex (19S regulator) binds report that B-Raf binds to PA28a, one of two subunits of the 1IS regulator to the 20S proteasome core complex to form the active 26S protea of proteasomes. PA28<* was isolated as a B-Raf-binding protein in a yeast some, which mediates the ATP- and ubiquitination-dependent degra two-hybrid screen of a PC 12 cDNA library. -
A Comparative Survey of Functional Footprints of EGFR Pathway Mutations in Human Cancers
Oncogene (2014) 33, 5078–5089 & 2014 Macmillan Publishers Limited All rights reserved 0950-9232/14 www.nature.com/onc ORIGINAL ARTICLE A comparative survey of functional footprints of EGFR pathway mutations in human cancers A Lane1,4, A Segura-Cabrera1,4 and K Komurov1,2,3 Genes functioning in epidermal growth factor receptor (EGFR) signaling pathways are among the most frequently activated oncogenes in human cancers. We have conducted a comparative analysis of functional footprints (that is, effect on signaling and transcriptional landscapes in cells) associated with oncogenic and tumor suppressor mutations in EGFR pathway genes in human cancers. We have found that mutations in the EGFR pathway differentially have an impact on signaling and metabolic pathways in cancer cells in a mutation- and tissue-selective manner. For example, although signaling and metabolic profiles of breast tumors with PIK3CA or AKT1 mutations are, as expected, highly similar, they display markedly different, sometimes even opposite, profiles to those with ERBB2 or EGFR amplifications. On the other hand, although low-grade gliomas and glioblastomas, both brain cancers, driven by EGFR amplifications are highly functionally similar, their functional footprints are significantly different from lung and breast tumors driven by EGFR or ERBB2. Overall, these observations argue that, contrary to expectations, the mechanisms of tumorigenicity associated with mutations in different genes along the same pathway, or in the same gene across different tissues, may be highly different. We present evidence that oncogenic functional footprints in cancer cell lines have significantly diverged from those in tumor tissues, which potentially explains the discrepancy of our findings with the current knowledge. -
Mice with the CHEK2*1100Delc SNP Are Predisposed to Cancer with a Strong Gender Bias
Mice with the CHEK2*1100delC SNP are predisposed to cancer with a strong gender bias El Mustapha Bahassia, Susan B. Robbinsa, Moying Yina, Gregory P. Boivinb, Raoul Kuiperc, Harry van Steegc, and Peter J. Stambrooka,1 aDepartments of Molecular Genetics and Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, OH 45267; bLaboratory Animal Resources, Wright State University, Dayton, OH 45435; and cLaboratory for Health Protection Research, National Institute of Public Health and the Environment, PO Box 1, 3720BA Bilthoven, The Netherlands Communicated by Elwood V. Jensen, University of Cincinnati College of Medicine, Cincinnati, OH, August 14, 2009 (received for review March 1, 2009) The CHEK2 kinase (Chk2 in mouse) is a member of a DNA damage sponds to a 37% cumulative risk of breast cancer at 70 years of response pathway that regulates cell cycle arrest at cell cycle age in heterozygotes, which compares with similar estimates of checkpoints and facilitates the repair of dsDNA breaks by a recom- 57% for BRCA1 heterozygotes and 49% for BRCA2 heterozy- bination-mediated mechanism. There are numerous variants of the gotes (13). CHEK2 gene, at least one of which, CHEK2*1100delC (SNP), asso- The CHEK2 protein resides predominantly in the nucleus. In ciates with breast cancer. A mouse model in which the wild-type response to DNA double-strand breaks, it participates in cell Chk2 has been replaced by a Chk2*1100delC allele was tested for cycle arrest and in initiating DNA repair (14, 15). Among its elevated risk of spontaneous cancer and increased sensitivity to many targets, CHEK2 phosphorylates serine 20 on p53 (16–18) challenge by a carcinogenic compound. -
A-Raf and Raf-1 Work Together to Influence Transient ERK Phosphorylation and Gl/S Cell Cycle Progression
Oncogene (2005) 24, 5207–5217 & 2005 Nature Publishing Group All rights reserved 0950-9232/05 $30.00 www.nature.com/onc A-Raf and Raf-1 work together to influence transient ERK phosphorylation and Gl/S cell cycle progression Kathryn Mercer1, Susan Giblett1, Anthony Oakden2, Jane Brown2, Richard Marais3 and Catrin Pritchard*,1 1Department of Biochemistry, University of Leicester, Adrian Building, University Road, Leicester LEI 7RH, UK; 2Division of Biomedical Services, University of Leicester, University Road, Leicester LEI 7RH, UK; 3Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK The Raf/MEK/ERK (extracellular regulated kinase) Kerkhoff and Rapp, 1997, 1998; Woods et al., 1997; signal transduction pathway controls the ability of cells Marshall, 1999; Squires et al., 2002). This function to respond to proliferative, apoptotic, migratory and is mediated by the ability of ERKs to translocate to the differentiation signals. We have investigated the combined nucleus where they are able to phosphorylate transcrip- contribution of A-Raf and Raf-1 isotypes to signalling tion factors, particularly the AP-1 complex that through this pathway by generating mice with knockout comprises various heterodimers of c-fos (c-fos, FosB, mutations of both A-raf and raf-1 genes. Double knockout Fra-1, Fra-2) and c-jun (c-Jun, JunB, JunD) family (DKO) mice have a more severe phenotype than single null members (Whitmarsh and Davis, 1996; Balmanno mutations of either gene, dying in embryogenesis at E10.5. and Cook, 1999; Cook et al., 1999; Shaulian and The DKO embryos show no changes in apoptosis, but Karin, 2002). -
High-Intensity Raf Signals Convert Mitotic Cell Cycling Into Cellular Growth'
(CANCERRESEARCH58. 1636-1640. April 15. 19981 Advances in Brief High-intensity Raf Signals Convert Mitotic Cell Cycling into Cellular Growth' Eugen Kerkhoff and Ulf R. Rapp2 lnstitutfürmedizinischeStrahlenkundeund Zellforschung(MSZ). Universityof Wurzburg,97078 Wiirzburg, Germany Abstract oncogernc c-Raf-1-estrogen receptor fusion protein (c-Raf-1-BxB ERTM). Activation of the exogenous kinase induces high and sustained The selectionof NIH 3T3 cellsexpressinga hydroxytamoxifen-induci c-Raf signals and inhibits DNA synthesis and mitosis. Despite the ble c-Raf-1-estrogen receptor fusion protein (c-Raf-1-BxB-ER@) in the inhibition of cell cycle progression, cell growth remains unaffected, absence or presence of the inducer results in dramatic differences in the expression levels of the fusion protein. Hydroxytamoxifen-mediated con leading to cells with a DNA content of G1 cells and a cell size of stitutive activation of the Rafsignal favors the selection ofcells expressing G2-M-phase cells. Therefore, high-intensity Raf signals uncouple the low levels of c-R.af-1-BxB-ER@. Cells selected in the absence of hy regulation of cell growth from DNA replication and mitosis. droxytamoxifen express up to 20 tImes higher levels of the inducible Raf kinase. Activation ofthe oncogenic Rafkinase in cells expressing low levels Materials and Methods leads to a weak activation of the Raf/Mek/Erk cascade and the induction of S phase In confluentcells.The activationof cellsexpressinghigh levels Expression Vector. The pBabe-puro-BxB-ER@ vector was constructed by ofthe kinaseleadsto a strongpersIstentsignalandinhibitsDNAsynthesis releasing sequences encoding the c-Raf-l-BxB-ER@ protein from the BJ4- andmitOsisinproliferatingcells.TheinhibitionofDNAsynthesisandcell BxB-ER@ vector (7) by EcoRI digestion (2.2-kb fragment) and inserting them dIvision is presumably due to the elevated expression ofthe cyclin-depend into the unique EcoRI recognition site of the pBabe-puro vector (13). -
3-Phosphoinositide-Dependent Protein Kinase-1 As an Emerging Target in the Management of Breast Cancer
Cancer Management and Research Dovepress open access to scientific and medical research Open Access Full Text Article REVIEW 3-Phosphoinositide-dependent protein kinase-1 as an emerging target in the management of breast cancer Chanse Fyffe Abstract: It should be noted that 3-phosphoinositide-dependent protein kinase-1 (PDK1) is a Marco Falasca protein encoded by the PDPK1 gene, which plays a key role in the signaling pathways activated by several growth factors and hormones. PDK1 is a crucial kinase that functions downstream Queen Mary University of London, Barts and The London School of of phosphoinositide 3-kinase activation and activates members of the AGC family of protein Medicine and Dentistry, Blizard kinases, such as protein kinase B (Akt), protein kinase C (PKC), p70 ribosomal protein S6 Institute, Inositide Signallling Group, London, UK kinases, and serum glucocorticoid-dependent kinase, by phosphorylating serine/threonine residues in the activation loop. AGC kinases are known to play crucial roles in regulating physi- ological processes relevant to metabolism, growth, proliferation, and survival. Changes in the expression and activity of PDK1 and several AGC kinases have been linked to human diseases For personal use only. including cancer. Recent data have revealed that the alteration of PDK1 is a critical component of oncogenic phosphoinositide 3-kinase signaling in breast cancer, suggesting that inhibition of PDK1 can inhibit breast cancer progression. Indeed, PDK1 is highly expressed in a majority of human breast cancer cell lines and both PDK1 protein and messenger ribonucleic acid are overexpressed in a majority of human breast cancers. Furthermore, overexpression of PDK1 is sufficient to transform mammary epithelial cells.