Stabilization of Amorphous Calcium Carbonate by Specialized Macromolecules in Biological and Synthetic Precipitates
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Review of the Mineralogy of Calcifying Sponges
Dickinson College Dickinson Scholar Faculty and Staff Publications By Year Faculty and Staff Publications 12-2013 Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges Abigail M. Smith Jade Berman Marcus M. Key, Jr. Dickinson College David J. Winter Follow this and additional works at: https://scholar.dickinson.edu/faculty_publications Part of the Paleontology Commons Recommended Citation Smith, Abigail M.; Berman, Jade; Key,, Marcus M. Jr.; and Winter, David J., "Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges" (2013). Dickinson College Faculty Publications. Paper 338. https://scholar.dickinson.edu/faculty_publications/338 This article is brought to you for free and open access by Dickinson Scholar. It has been accepted for inclusion by an authorized administrator. For more information, please contact [email protected]. © 2013. Licensed under the Creative Commons http://creativecommons.org/licenses/by- nc-nd/4.0/ Elsevier Editorial System(tm) for Palaeogeography, Palaeoclimatology, Palaeoecology Manuscript Draft Manuscript Number: PALAEO7348R1 Title: Not all sponges will thrive in a high-CO2 ocean: Review of the mineralogy of calcifying sponges Article Type: Research Paper Keywords: sponges; Porifera; ocean acidification; calcite; aragonite; skeletal biomineralogy Corresponding Author: Dr. Abigail M Smith, PhD Corresponding Author's Institution: University of Otago First Author: Abigail M Smith, PhD Order of Authors: Abigail M Smith, PhD; Jade Berman, PhD; Marcus M Key Jr, PhD; David J Winter, PhD Abstract: Most marine sponges precipitate silicate skeletal elements, and it has been predicted that they would be among the few "winners" in an acidifying, high-CO2 ocean. -
The Unique Skeleton of Siliceous Sponges (Porifera; Hexactinellida and Demospongiae) That Evolved first from the Urmetazoa During the Proterozoic: a Review
Biogeosciences, 4, 219–232, 2007 www.biogeosciences.net/4/219/2007/ Biogeosciences © Author(s) 2007. This work is licensed under a Creative Commons License. The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review W. E. G. Muller¨ 1, Jinhe Li2, H. C. Schroder¨ 1, Li Qiao3, and Xiaohong Wang4 1Institut fur¨ Physiologische Chemie, Abteilung Angewandte Molekularbiologie, Duesbergweg 6, 55099 Mainz, Germany 2Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, 266071 Qingdao, P. R. China 3Department of Materials Science and Technology, Tsinghua University, 100084 Beijing, P. R. China 4National Research Center for Geoanalysis, 26 Baiwanzhuang Dajie, 100037 Beijing, P. R. China Received: 8 January 2007 – Published in Biogeosciences Discuss.: 6 February 2007 Revised: 10 April 2007 – Accepted: 20 April 2007 – Published: 3 May 2007 Abstract. Sponges (phylum Porifera) had been considered an axial filament which harbors the silicatein. After intracel- as an enigmatic phylum, prior to the analysis of their genetic lular formation of the first lamella around the channel and repertoire/tool kit. Already with the isolation of the first ad- the subsequent extracellular apposition of further lamellae hesion molecule, galectin, it became clear that the sequences the spicules are completed in a net formed of collagen fibers. of sponge cell surface receptors and of molecules forming the The data summarized here substantiate that with the find- intracellular signal transduction pathways triggered by them, ing of silicatein a new aera in the field of bio/inorganic chem- share high similarity with those identified in other metazoan istry started. -
New Finds of Skeletal Fossils in the Terminal Neoproterozoic of the Siberian Platform and Spain
New finds of skeletal fossils in the terminal Neoproterozoic of the Siberian Platform and Spain ANDREY YU. ZHURAVLEV, ELADIO LIÑÁN, JOSÉ ANTONIO GÁMEZ VINTANED, FRANÇOISE DEBRENNE, and ALEKSANDR B. FEDOROV Zhuravlev, A.Yu., Liñán, E., Gámez Vintaned, J.A., Debrenne, F., and Fedorov, A.B. 2012. New finds of skeletal fossils in the terminal Neoproterozoic of the Siberian Platform and Spain. Acta Palaeontologica Polonica 57 (1): 205–224. A current paradigm accepts the presence of weakly biomineralized animals only, barely above a low metazoan grade of or− ganization in the terminal Neoproterozoic (Ediacaran), and a later, early Cambrian burst of well skeletonized animals. Here we report new assemblages of primarily calcareous shelly fossils from upper Ediacaran (553–542 Ma) carbonates of Spain and Russia (Siberian Platform). The problematic organism Cloudina is found in the Yudoma Group of the southeastern Si− berian Platform and different skeletal taxa have been discovered in the terminal Neoproterozoic of several provinces of Spain. New data on the morphology and microstructure of Ediacaran skeletal fossils Cloudina and Namacalathus indicate that the Neoproterozoic skeletal organisms were already reasonably advanced. In total, at least 15 skeletal metazoan genera are recorded worldwide within this interval. This number is comparable with that known for the basal early Cambrian. These data reveal that the terminal Neoproterozoic skeletal bloom was a real precursor of the Cambrian radiation. Cloudina,the oldest animal with a mineralised skeleton on the Siberian Platform, characterises the uppermost Ediacaran strata of the Ust’−Yudoma Formation. While in Siberia Cloudina co−occurs with small skeletal fossils of Cambrian aspect, in Spain Cloudina−bearing carbonates and other Ediacaran skeletal fossils alternate with strata containing rich terminal Neoprotero− zoic trace fossil assemblages. -
PROTOCTISTA Foraminiferans, Amoeba, Algae, Diatoms
UNDERWATER FIELD GUIDE TO ROSS ISLAND & MCMURDO SOUND, ANTARCTICA: PROTOCTISTA foraminiferans, amoeba, algae, diatoms Peter Brueggeman Photographs: Sam Bowser/S043 archives, Robert Sanders (Sam Bowser/S043 archives), Canadian Museum of Nature (Kathleen Conlan), Shawn Harper, Adam G Marsh, & Norbert Wu The National Science Foundation's Office of Polar Programs sponsored Norbert Wu on an Artist's and Writer's Grant project, in which Peter Brueggeman participated. One outcome from Wu's endeavor is this Field Guide, which builds upon principal photography by Norbert Wu, with photos from other photographers, who are credited on their photographs and above. This Field Guide is intended to facilitate underwater/topside field identification from visual characters. Organisms were identified from photographs with no specimen collection, and there can be some uncertainty in identifications solely from photographs. © 1998+: Text © Peter Brueggeman; Photographs © Sam Bowser/S043 archives, Robert Sanders (Sam Bowser/S043 archives), Canadian Museum of Nature (Kathleen Conlan), Shawn Harper, Adam G Marsh, & Norbert Wu. Photographs may not be used in any form without the express written permission of the photographers. Norbert Wu does not grant permission for uncompensated use of his photos; see www.norbertwu.com giant agglutinated foraminiferan Astrammina rara page 5 calcareous foraminiferan Cibicides refulgens page 7 foraminferan Cornuspira antarctica page 10 2 giant arborescent agglutinated foraminiferan Notodendrodes hyalinosphaira page 11 giant arborescent -
Competition Between Silicifiers and Non-Silicifiers in the Past And
Competition between silicifiers and non-silicifiers in the past and present ocean and its evolutionary impacts Katharine Hendry, Alan Marron, Flora Vincent, Daniel Conley, Marion Gehlen, Federico Ibarbalz, Bernard Queguiner, Chris Bowler To cite this version: Katharine Hendry, Alan Marron, Flora Vincent, Daniel Conley, Marion Gehlen, et al.. Competition between silicifiers and non-silicifiers in the past and present ocean and its evolutionary impacts. Fron- tiers in Marine Science, Frontiers Media, 2018, 5, pp.22. 10.3389/fmars.2018.00022. hal-01812492 HAL Id: hal-01812492 https://hal.archives-ouvertes.fr/hal-01812492 Submitted on 11 Jun 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. REVIEW published: 06 February 2018 doi: 10.3389/fmars.2018.00022 Competition between Silicifiers and Non-silicifiers in the Past and Present Ocean and Its Evolutionary Impacts Katharine R. Hendry 1†, Alan O. Marron 2†, Flora Vincent 3†, Daniel J. Conley 4,5, Marion Gehlen 6, Federico M. Ibarbalz 3, Bernard Quéguiner 7 and Chris Bowler 3* 1 Department of Earth Sciences, -
Indigenous Demosponge Spicules in a Late Devonian Stromatoporoid Basal Skeleton from the Frasnian of Belgium
Indigenous demosponge spicules in a Late Devonian stromatoporoid basal skeleton from the Frasnian of Belgium ANNE-CHRISTINE DA SILVA, STEPHEN KERSHAW, FRED ERIC BOULVAIN, BENOIT L. M. HUBERT, BRUNO MISTIAEN, ALAN REYNOLDS AND JOACHIM REITNER Da Silva A.-C., Kershaw S., Boulvain F., Hubert B.L.M., Mistiaen B., Reynolds A. & Reitner J. 2014: Indigenous demosponge spicules in a Late Devonian stromatoporoid basal skeleton from the Frasnian of Belgium. Lethaia, Vol. 47, pp. 365–375. This paper records the first example of a demosponge spicule framework in a single specimen of a Devonian stromatoporoid from the Frasnian of southern Belgium. The small sample (2.5 9 2 cm) is a component in a brecciated carbonate from a carbonate mound in La Boverie Quarry 30 km east of Dinant. Because of the small size of the sample, generic identification is not confirmed, but the stromatoporoid basal skeleton is similar to the genus Stromatopora. The spicules are arranged in the calcified skele- ton, but not in the gallery space, and are recrystallized as multi-crystalline calcite. The spicules fall into two size ranges: 10–20 lm diameter and 500–2000 lm long for the large ones and between 5–15 lm diameter and 50–100 lm length for the small ones. In tangential section, the spicules are circular, they have a simple structure, and no axial canal has been preserved. The large spicules are always monaxons, straight or slightly curved styles or strongyles. The spicules most closely resemble halichondrid/ axinellid demosponge spicules and are important rare evidence of the existence of spicules in Palaeozoic stromatoporoids, reinforcing the interpretation that stromatop- oroids were sponges. -
Examples from Non-Bilaterian Animals" (2014)
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2014 The mitochondrial ratchet: Examples from non- bilaterian animals Walker Pett Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Part of the Bioinformatics Commons Recommended Citation Pett, Walker, "The mitochondrial ratchet: Examples from non-bilaterian animals" (2014). Graduate Theses and Dissertations. 14035. https://lib.dr.iastate.edu/etd/14035 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. The mitochondrial ratchet: Examples from non-bilaterian animals by Walker Pett A thesis submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Bioinformatics and Computational Biology Program of Study Committee Dennis V. Lavrov, Co-major Professor Karin Dorman, Co-major Professor Jonathan Wendel Jeanne Serb Amy Andreotti Iowa State University Ames, Iowa 2014 ii Each of my nematocyst limbs shift and pulse on ocean, dangling in salt for tiny meals of cytoplasmic meat. Your gills and silvered skins still microscopic, your uniformed fragile bodies catch against my tentacle-teeth as I weave through depths, past pelagic zones to trail like finely threaded angry lace, down where light has long been filtered out, diluted. I swing through you, clouds of flagellates, you unholy vulnerable masses of genetic matter, scattered across my currents, forgotten by those who left you, equal, unnamed. -
Zootaxa,On the Molecular Phylogeny of Sponges (Porifera)
Zootaxa 1668: 107–126 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) On the molecular phylogeny of sponges (Porifera)* DIRK ERPENBECK and GERT WÖRHEIDE1 Courant Research Center Geobiology, Georg–August–Universität Göttingen, Goldschmidtstr. 3, 37077 Göttingen, Germany & Biodi- versity Program, Queensland Museum, 4101 South Brisbane, Queensland, Australia 1 Corresponding author. Email: [email protected]–goettingen.de *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 107 Introduction . 108 The phylogenetic position of Porifera within the Metazoa . 109 Class–level problems in Porifera taxonomy . 109 Calcarea . 110 Hexactinellida . 112 Demosponges (sensu stricto) . 112 Demosponge higher phylogeny . 112 Spirophorida . 114 Astrophorida . 114 Chondrosida . 114 Hadromerida . 114 Hadromerid families . 114 Suberitidae . 115 Poecilosclerida . 115 Poecilosclerida suborders . 115 Raspailiidae . 116 Podospongiidae . 116 Haplosclerida . 116 Spongillina (freshwater sponges) . 116 Marine Haplosclerida . 117 Halichondrida . 117 Halichondrida families . 117 Agelasida . 118 Verongida . 118 Dictyoceratida . 118 Dendroceratida . 119 Outlook . 119 Acknowledgements . 121 References . 121 Abstract In the past decade molecular genetic markers have been introduced for research on the evolution and systematics of sponges. Historically, sponges have been difficult to classify due to lack of complex characters with the result that hypothesised phylogenetic relationships for various sponge taxa have changed rapidly over the past few years. Here, we summarize the current status of systematic and phylogenetic hypotheses proposed for sponges. We discuss the relation- Accepted by Z.-Q. Zhang: 28 Nov. 2007; published: 21 Dec. 2007 107 ships among the three classes, Calcarea (calcareous sponges), Hexactinellida (glass sponges) and Demospongiae, as well as those among the members within each class. -
(Suberites Domuncula) Primmorph Cells and Hydroxyapatite‐Forming Human Saos‐2 Cells
Analysis and modification of biosilica‐forming sponge (Suberites domuncula) primmorph cells and hydroxyapatite‐forming human SaOS‐2 cells Dissertation zur Erlangung des Grades "Doktor der Naturwissenschaften" am Fachbereich Biologie der Johannes Gutenberg‐Universität in Mainz vorgelegt von Julia Sofia Markl geb. am 02. Oktober 1985 in München Mainz, 2016 Dekan: Prof. Dr. Hans Zischler Erster Berichterstatter: Prof. Dr. Werner E. G. Müller Zweiter Berichterstatter: Prof Dr. Walter Stöcker Tag der mündlichen Prüfung: 27.06.2016 D77 (Dissertation Johannes Gutenberg‐Universität Mainz) INDEX 1 SUMMARY ......................................................................................................................................... 1 2 ZUSAMMENFASSUNG .......................................................................................................................... 2 3 INTRODUCTION .................................................................................................................................. 3 3.1 Sponges as members of the animal kingdom ......................................................................... 3 3.2 Sponge general morphology and systematics ........................................................................ 5 3.3 Biosilica production in sponges ............................................................................................... 8 3.4 The sponge Suberites domuncula in nature and captivity .................................................... 15 3.5 S. domuncula and its biosilica -
Siliceous Spicules in Marine Demosponges (Example Suberites Domuncula)
Micron 37 (2006) 107–120 www.elsevier.com/locate/micron Review Siliceous spicules in marine demosponges (example Suberites domuncula) Werner E.G. Mu¨ller a,*, Sergey I. Belikov b, Wolfgang Tremel c, Carole C. Perry d, Winfried W.C. Gieskes e, Alexandra Boreiko a, Heinz C. Schro¨der a a Institut fu¨r Physiologische Chemie, Abteilung Angewandte Molekularbiologie, Universita¨t, Duesbergweg 6, D-55099 Mainz, Germany b Limnological Institute of the Siberian Branch of Russian Academy of Sciences, Ulan-Batorskaya 3, RUS-664033 Irkutsk, Russian Federation c Institut fu¨r Anorganische Chemie, Universita¨t, Duesbergweg 10-14, D-55099 Mainz, Germany d Department of Chemistry and Physics, Nottingham Trent University, Clifton Lane, Nottingham NG11 8NS, UK e Department of Marine Biology, Biological Center, Center for Ecological and Evolutionary Studies, University of Groningen, P.O. Box 14, 9750 AA Haren, The Netherlands Received 2 August 2005; revised 4 September 2005; accepted 5 September 2005 Abstract All metazoan animals comprise a body plan of different complexity. Since—especially based on molecular and cell biological data—it is well established that all metazoan phyla, including the Porifera (sponges), evolved from a common ancestor the search for common, basic principles of pattern formation (body plan) in all phyla began. Common to all metazoan body plans is the formation of at least one axis that runs from the apical to the basal region; examples for this type of organization are the Porifera and the Cnidaria (diploblastic animals). It seems conceivable that the basis for the formation of the Bauplan in sponges is the construction of their skeleton by spicules. -
A New Plate-Like Hypercalcified Chaetetid Demosponge (Loiscupula Bachendensi Gen
Palaeontologia Electronica palaeo-electronica.org A new plate-like hypercalcified chaetetid demosponge (Loiscupula bachendensi gen. nov. sp. nov) from the Cantabrian Zone (Moscovian, Pennsylvanian, NW Spain) Diego Corrochano and Ronald R. West ABSTRACT A new hypercalcified chaetetid sponge, Loiscupula bachendensi gen. nov. sp. nov. (Demospongiae), has been recovered from the Bachende Formation (late Kashirian/early Myachkovian) in the Cantabrian Zone, NW Spain. Loiscupula has a cir- cular, concentric, platy basal skeleton, some with cylindrical features and chimneys, which sometimes branch on the upper surface. The basal skeleton is composed of polygonal (commonly hexagonal) to rounded tubules perpendicular to the surface of the skeleton producing the characteristic honeycomb pattern of chaetetids. Cathodolu- minescence microscopy revealed non-luminescent calcite pseudomorphs of monoaxon and polyaxon spicules, rarely styles, which are irregularly distributed although there are occurrences that suggest that a spicular network existed. The basal skeleton is composed of neomorphic low-Mg calcite (1.7 mol% MgCO3) and is strongly recrystallized; the tentative penicillate microstructure with relics of aragonite needles, and the high Sr content (up to 3456 ppm), suggest an original aragonite composition. Loiscupula is interpreted as primarily a gregarious organism with an inferred central point of attachment. This mode of growth produced small cryptic cavities between Lois- cupula and the substrate, which were inhabited by encrusting organisms, mostly fistuli- porid bryozoans. Based on the associated fossils and sedimentological features, it is suggested that Loiscupula inhabited an environment with a muddy bottom in the euphotic zone, where the water was well-oxygenated, of normal salinity, and the energy regime low to moderate. -
Phenotypic Plasticity in the Caribbean Sponge Callyspongia Vaginalis (Porifera: Haplosclerida)
SCIENTIA MARINA 74(3) September 2010, 445-453, Barcelona (Spain) ISSN: 0214-8358 doi: 10.3989/scimar.2010.74n3445 Phenotypic plasticity in the Caribbean sponge Callyspongia vaginalis (Porifera: Haplosclerida) SUSANNA LÓPEZ-LEGENTIL 1,2, PATRICK M. ERWIN 1, TIMOTHY P. HENKEL 1, TSE-LYNN LOH 1 and JOSEPH R. PAWLIK 1 1 Center for Marine Science, University of North Carolina Wilmington. 5600 Marvin K. Moss Lane, Wilmington NC 28409, USA. E-mail: [email protected] 2 Current Address: Department of Animal Biology (Invertebrates), Faculty of Biology, University of Barcelona, 645 Diagonal Avenue, 08028 Barcelona, Spain. SUMMARY: Sponge morphological plasticity has been a long-standing source of taxonomic difficulty. In the Caribbean, several morphotypes of the sponge Callyspongia vaginalis have been observed. To determine the taxonomic status of three of these morphotypes and their relationship with the congeneric species C. plicifera and C. fallax, we compared the spicule composition, spongin fiber skeleton and sequenced fragments of the mitochondrial genes 16S and COI and nuclear genes 28S and 18S ribosomal RNA. Phylogenetic analyses with ribosomal markers 18S and 28S rRNA confirmed the position of our sequences within the Callyspongiidae. None of the genetic markers provided evidence for consistent differentiation among the three morphotypes of C. vaginalis and C. fallax, and only C. plicifera stood as a distinct species. The 16S mtDNA gene was the most variable molecular marker for this group, presenting a nucleotide variability (/ = 0.024) higher than that reported for COI. Unlike recent studies for other sponge genera, our results indicate that species in the genus Callyspongia maintain a high degree of phenotypic plasticity, and that morphological characteristics may not reflect reproductive boundaries in C.