2003–04 Participant Testimonials the Community in Support of the Banff
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
I. Overview of Activities, April, 2005-March, 2006 …
MATHEMATICAL SCIENCES RESEARCH INSTITUTE ANNUAL REPORT FOR 2005-2006 I. Overview of Activities, April, 2005-March, 2006 …......……………………. 2 Innovations ………………………………………………………..... 2 Scientific Highlights …..…………………………………………… 4 MSRI Experiences ….……………………………………………… 6 II. Programs …………………………………………………………………….. 13 III. Workshops ……………………………………………………………………. 17 IV. Postdoctoral Fellows …………………………………………………………. 19 Papers by Postdoctoral Fellows …………………………………… 21 V. Mathematics Education and Awareness …...………………………………. 23 VI. Industrial Participation ...…………………………………………………… 26 VII. Future Programs …………………………………………………………….. 28 VIII. Collaborations ………………………………………………………………… 30 IX. Papers Reported by Members ………………………………………………. 35 X. Appendix - Final Reports ……………………………………………………. 45 Programs Workshops Summer Graduate Workshops MSRI Network Conferences MATHEMATICAL SCIENCES RESEARCH INSTITUTE ANNUAL REPORT FOR 2005-2006 I. Overview of Activities, April, 2005-March, 2006 This annual report covers MSRI projects and activities that have been concluded since the submission of the last report in May, 2005. This includes the Spring, 2005 semester programs, the 2005 summer graduate workshops, the Fall, 2005 programs and the January and February workshops of Spring, 2006. This report does not contain fiscal or demographic data. Those data will be submitted in the Fall, 2006 final report covering the completed fiscal 2006 year, based on audited financial reports. This report begins with a discussion of MSRI innovations undertaken this year, followed by highlights -
Abstract Booklet
Abstract Booklet ONLINE EVENT 26th International Conference on DNA Computing and Molecular Programming 14–17 September 2020 IOP webinars for the physics community dna26.iopconfs.org/ Contents Committees 2 Sponsors 3 Proceedings 3 Programme 4 Poster programme 8 Keynote presentations 11 Contributed presentations 17 Poster sessions 48 1 Committees Chairs • Andrew Phillips, Microsoft Research, Cambridge, UK • Andrew Turberfield, Department of Physics, University of Oxford, UK Programme Chairs • Cody Geary, Interdisciplinary Nanoscience Centre, University of Aarhus, Denmark • Matthew Patitz, Department of Computer Science and Computer Engineering, University of Arkansas Steering Committee • Luca Cardelli, Computer Science, Oxford University, UK • Anne Condon (Chair), Computer Science, University of British Columbia, Canada • Masami Hagiya, Computer Science, University of Tokyo, Japan • Natasha Jonoska, Mathematics, University of Southern Florida, USA • Lila Kari, Computer Science, University of Waterloo, Canada • Chengde Mao, Chemistry, Purdue University, USA • Satoshi Murata, Robotics, Tohoku University, Japan • John H. Reif, Computer Science, Duke University, USA • Grzegorz Rozenberg, Computer Science, University of Leiden, The Netherlands • Rebecca Schulman, Chemical and Biomolecular Engineering, Johns Hopkins University, USA • Nadrian C. Seeman, Chemistry, New York University, USA • Friedrich Simmel, Physics, Technical University Munich, Germany • David Soloveichik, Electrical and Computer Engineering, The University of Texas at Austin, -
BIRS 2010 Scientific Report
Banff International Research Station for Mathematical Innovation and Discovery 2010 Scientific Report 5-Day Workshops 2010 Jan 10 Jan 15 Mathematics and Physics of Polymer Entanglement Jan 17 Jan 22 Multi-Scale Stochastic Modeling of Cell Dynamics Jan 24 Jan 29 Sparse Random Structures: Analysis and Computation Jan 31 Feb 5 Theory and Applications of Matrices Described by Patterns Jan 31 Feb 5 Branching Random Walks and Searching in Trees Feb 7 Feb 12 Small-scale Hydrodynamics: Microfluidics and Thin Films Feb 14 Feb 19 Convex Algebraic Geometry Feb 21 Feb 26 Some Mathematical Problems of Material Science Feb 28 Mar 5 Randomization, Relaxation and Complexity Mar 7 Mar 12 Quasi-Isometric Rigidity in Low-Dimensional Topology Mar 7 Mar 12 (0,2) Mirror Symmetry and Heterotic Gromov-Witten Invariants Mar 14 Mar 19 Geometric Scattering Theory and Applications Mar 21 Mar 26 Deterministic and Stochastic Front Propagation Mar 28 Apr 2 Volume Inequalities Apr 4 Apr 9 Coordinated Mathematical Modeling of Internal Waves Apr 11 Apr 16 Generalized Complex and Holomorphic Poisson Geometry Apr 18 Apr 23 Optimal Transportation and Applications Apr 25 Apr 30 Character Varieties in the Geometry and Topology of Low-Dimensional Manifolds May 2 May 7 Functional Data Analysis: Future Directions May 2 May 7 Creative Writing in Mathematics and Science May 9 May 14 Nonlinear Diffusions and Entropy Dissipation: From Geometry to Biology May 16 May 21 Inverse Transport Theory and Tomography May 23 May 28 Self-assembly of Block Copolymers: Theoretical Models and Mathematical -
DNA 7 - Seveth International Meeting on DNA Based Computers - Instruction for Authors
DNA 7 - Seveth International Meeting on DNA Based Computers - Instruction for Authors DNA7 Seventh International Meeting on DNA Based Computers June 10-13, 2001 Download this Document as .pdf | .doc | .rtf Introduction Biomolecular computing has emerged as a an interdisciplinary field that draws together molecular biology, chemistry, computer science and mathematics. Our knowledge of DNA nanotechnology and biomolecular computing increases exponentially with every passing year. The annual international meeting has been a forum where scientists with different backgrounds, yet sharing a common interest in biomolecular computing, meet and present their latest results. Continuing with this tradition, the 7th International Meeting on DNA Based Computers will focus on the current theoretical and experimental results with the greatest impact. Papers and poster presentations are sought in all areas that relate to computing with biomolecules including (but not limited to): algorithms and applications, models of biomolecular computation (using DNA and/or other molecules), analysis of laboratory techniques and theoretical models, error correction, sequence design, simulation software, DNA chemistry, DNA motifs, DNA devices, and computational processes in vivo. We particularly encourage papers and posters reporting experimental results. Instruction for Authors ● Each paper should include one address and e-mail address for all correspondence related to the submission. ● Each paper should contain an abstract stating the main results and their importance. ● We encourage document preparation in LaTex, but PostScript, pdf and MSWord files will also be accepted. For the final version of the document please follow the guidelines for the Springer-Verlag LNCS series at: http://www.springer.de/comp/lncs/authors.html ● The preferred format for submission is a .PDF, .PS or .RTF file or e-mailed to the chair of the program committee at: [email protected]. -
EMT Biocomputing Workshop Report
FINAL WORKSHOP REPORT Sponsor: 004102 : Computing Research Association Award Number: AGMT dtd 7-2-08 Title: NSF Workshop on Emerging Models and Technologies in Computing: Bio-Inspired Computing and the Biology and Computer Science Interface. Report Prepared by: Professor Ron Weiss Departments of Electrical Engineering and Molecular Biology Princeton University Professor Laura Landweber Departments of Ecology and Evolutionary Biology and Molecular Biology Princeton University Other Members of the Organizing Committee Include: Professor Mona Singh Departments of Computer Science and Molecular Biology Princeton University Professor Erik Winfree Department of Computer Science California Institute of Technology Professor Mitra Basu Department of Computer Science Johns Hopkins University and the United States Naval Academy Workshop Website: https://www.ee.princeton.edu/Events/emt/ Draft: 09/07/2008 Table of Contents I. Executive Summary 1. Workshop Objectives 2. Summary of the Workshop Methodology and Findings 3. Recommendations II. Grand Challenges III. Breakout Group Presentations Appendices A1. Agenda A2. Participant List A3. Abstracts of Invited Presentations A4. Presentations Draft: 09/07/2008 I. Executive Summary I.1 Workshop Goals The National Science Foundation, Division of Computer and Information Science and Engineering (CISE), Computing and Communications Foundations (CCF) sponsored a Workshop on Emerging Models and Technologies in Computing (EMT): Bio- Inspired Computing. This workshop brought together distinguished leaders in the fields of synthetic biology, bio-computing, systems biology, and protein and nucleic acid engineering to share their vision for science and research and to learn about the research projects that EMT has funded. The goal was to explore and to drive the growing interface between Biology and Computer Science. -
NCTS Midterm Report, 2015 National Center for Theoretical Sciences
NCTS Midterm Report, 2015 National Center for Theoretical Sciences, Mathematics Division October, 2015 Contents I. Overview 2 II. Operation and Achievement of the Center 7 III. Academic Programs 11 IV. Goals and Planning of Next Year 65 V. Budget and Expenditure 77 VI. Host institution's commitment 78 VII. Appendix 81 1 I. Overview A. Report of Director 1. Goals and missions of the Center Theoretical sciences are undoubtedly the foundation of sciences and technology of our daily life. In fact, it is generally believed that theoretical science will play more and more important role in the next few decades. Cultivating young generation with solid training of fundamental sciences and fostering frontier academic research in theoretical sciences are thus essential to further development of our society. Therefore, in 1997, National Center for Theoretical Sciences (NCTS) was established by National Science Council. Since its establishment, NCTS has completely changed the mathematical society. The achievement of NCTS during the past 18 years was remarkable. It is generally believed that NCTS is the key factor for the great improvement of the mathematical research in Taiwan. NCTS has set its objective to promote researches of theoretical sciences in Taiwan. The aim consists of the following specific aspects: a. Fostering world class outstanding researchers, and attract top young researchers to do cutting edge research in NCTS; b. Attracting worldwide outstanding theoretical scientists to do research in Taiwan; c. Developing international and inter-disciplinary scientific research program; d. Promoting international cooperation and collaborations, aiming to become a leading research institution in Asia and in the world. -
Gazette 35 Vol 2
General News The CSIRO-ANZIAM Student Support Scheme for attendance at the ANZIAM and special interest group conferences The CSIRO/ANZIAM Student Support Scheme (SSS) is designed to provide fund- ing to support conference travel and registration for students studying at univer- sities in Australia and New Zealand, who wish to attend the ANZIAM conference or meetings of the special interest groups. These are, specifically, the Maths in Industry Study Group (MISG), the CTAC conference of the Computational Math- ematics Group, the EMAC conference of the Engineering Mathematics Group and the Mathsport conference of the Mathematics and Computers in Sport Group. The scheme will be funded by the annual sponsorship that has been provided to ANZIAM by CSIRO, together with any supplementary funding that the ANZIAM Executive may wish to vote. More details and the application form can be found at http://www.anziam.org.au/The+CSIRO-ANZIAM+Student+Support+Scheme. This scheme is particularly relevant to three upcoming conferences: • EMAC 2009, http://www.maths.adelaide.edu.au/emac2009/; • ANZIAM 2010, http://www.math.canterbury.ac.nz/ANZIAM/; • MISG 2010, http://www.rmit.edu.au/maths/misg. The objectives of the SSS are: • To help students attend conferences relevant to their interests; • To emphasize the importance of students giving presentations about their work; • To provide a first step educating students in ways of obtaining funding to help their research efforts. In order to be eligible for funding, students will be required to present a talk at the conference. It is expected that students will have discussed their plans with their supervisors, and supervisor endorsement of applications is required. -
Gazette 35 Vol 2
Volume 36 Number 5 2009 The Australian Mathematical Society Gazette Rachel Thomas and Birgit Loch (Editors) Eileen Dallwitz (Production Editor) Dept of Mathematics and Computing E-mail: [email protected] The University of Southern Queensland Web: http://www.austms.org.au/Gazette Toowoomba, QLD 4350, Australia Tel: +61 7 4631 1157; Fax: +61 7 4631 5550 The individual subscription to the Society includes a subscription to the Gazette. Libraries may arrange subscriptions to the Gazette by writing to the Treasurer. The cost for one volume consisting of five issues is AUD 99.00 for Australian customers (includes GST), AUD 114.00 (or USD 110.00) for overseas customers (includes postage, no GST applies). The Gazette seeks to publish items of the following types: • Reviews of books, particularly by Australian authors, or books of wide interest • Classroom notes on presenting mathematics in an elegant way • Items relevant to mathematics education • Letters on relevant topical issues • Information on conferences, particularly those held in Australasia and the region • Information on recent major mathematical achievements • Reports on the business and activities of the Society • Staff changes and visitors in mathematics departments • News of members of the Australian Mathematical Society Local correspondents are asked to submit news items and act as local Society representatives. Material for publication and editorial correspondence should be submitted to the editor. Notes for contributors Please send contributions to [email protected]. Submissions should be fairly short, easy to read and of interest to a wide range of readers. We ask authors to typeset technical articles using LATEX2ε, AMS-LATEX or variants. -
ERIK WINFREE Professor of Computer Science and Computation & Neural Systems and Bioengineering California Institute of Techn
ERIK WINFREE Professor of Computer Science and Computation & Neural Systems and Bioengineering California Institute of Technology Mail Code 136-93 Pasadena, California 91125 Telephone: 626-395-6246 Fax: 626-584-0630 E-Mail: [email protected] Web: www.dna.caltech.edu/~winfree Education: Ph.D., Computation & Neural Systems, California Institute of Technology, 1998. Thesis advisor: John Hopfield. Title: Algorithmic Self-Assembly of DNA. B.S. with Honors, Mathematics (spec. in Computer Science), University of Chicago, 1991. Budapest Technological Institute, Hungary Budapest Semesters in Mathematics, 1989. Professional Positions: 2010-Present Professor of Computer Science and Computation & Neural Systems and Bioengineering 2012-2012 Visiting Professor at Harvard, Wyss Institute for Biologically Inspired Engineering 2007-2010 Associate Professor of Comp. Sci. and Computation & Neural Systems, and Bioengineering 2006-2007 Associate Professor of Computer Science and Computation & Neural Systems 2000-2006 Assistant Professor of Computer Science and Computation & Neural Systems 1999-2000 Visiting Scientist, MIT Artificial Intelligence Laboratory 1998-1999 Lewis Thomas Postdoctoral Fellow, Princeton Department of Molecular Biology 1990-1992 Wolfram Research, Inc., Research Assistant to Stephen Wolfram Teaching experience (courses taught at Caltech): • CNS/Bi/Ph/CS 187: Neural Computation (Fall 2000 – Fall 2008) • CS/EE/Ma 129a: Information and Complexity (Fall 2002, 2003, 2006, Winter 2008, Fall 2009, Winter 2009, Fall 2011), section b: (Winter -
ERIK WINFREE Professor of Computer Science And
ERIK WINFREE Professor of Computer Science and Computation & Neural Systems and Bioengineering California Institute of Technology Mail Code 136-93 Pasadena, California 91125 Telephone: 626-395-6246 Fax: 626-584-0630 E-Mail: [email protected] Web: www.dna.caltech.edu/~winfree Education: Ph.D., Computation & Neural Systems, California Institute of Technology, 1998. Thesis advisor: John Hopfield. Title: Algorithmic Self-Assembly of DNA B.S. with Honors, Mathematics (spec. in Computer Science), University of Chicago, 1991. Budapest Technological Institute, Hungary Budapest Semesters in Mathematics, 1989. Professional Positions: 2010-Present Professor of Computer Science and Computation & Neural Systems and Bioengineering 2007-2010 Associate Professor of Computer Science and Computation & Neural Systems, and Bioengineering 2006-2007 Associate Professor of Computer Science and Computation & Neural Systems 2000-2006 Assistant Professor of Computer Science and Computation & Neural Systems 1999-2000 Visiting Scientist, MIT Artificial Intelligence Laboratory 1998-1999 Lewis Thomas Postdoctoral Fellow, Princeton Department of Molecular Biology 1990-1992 Wolfram Research, Inc., Research Assistant to Stephen Wolfram Teaching experience: Courses taught at Caltech: • CNS/Bi/Ph/CS 187: Neural Computation (Fall '00, Fall '01, Fall '02, Fall '03, Fall ’04, Fall ’05, Fall ’06, Fall ’07, Fall ‘08) • CS/EE/Ma 129a: Information and Complexity (Fall '02, Fall '03, Fall ’06, Winter ’08, Fall ’09, Winter ’09, Fall ’11), section b: (Winter ’07, Spring ‘08, Spring -
Erik Winfree
ERIK WINFREE Associate Professor of Computer Science and Computation & Neural Systems California Institute of Technology, Mail Code 136-93, Pasadena, California 91125 Telephone: 626-395-6246, Fax: 626-584-0630 E-Mail: [email protected] Web: www.dna.caltech.edu/~winfree/ Professional Preparation: University of Chicago, with Honors, Mathematics (specialization in Computer Science), B.S., 1991 California Institute of Technology, Computation & Neural Systems, Ph.D., 1998 Princeton University, Department of Molecular Biology, Lewis Thomas Postdoctoral Fellow, 1998-1999 Professional Appointments: 1999-present Associate Professor of Computer Science and Computation & Neural Systems 1999-2000 Visiting Scientist, MIT Artificial Intelligence Laboratory Closely Related Publications: 1. Seelig, G., Soloveichik, D., Zhang, D. Y., Winfree, E., “Enzyme-Free Nucleic Acid Logic Circuits,” Science 314: 1585-1588 (2006). 2. Seelig, G., Yurke, B. and Winfree, E., “Catalyzed Relaxation of Metastable DNA Fuel.” JACS 128(37): 12211- 12220 (2006). 3. Barish, R. D., Rothemund, P.W.K., Winfree, E., “Two Computational Primitives for Algorithmic Self- Assembly: Coping and Counting,” Nano Letters 5(12): 2586-2596 (2005). 4. Rothemund, P.W.K., Papadakis, N., and Winfree, E., “Algorithmic Self-Assembly of DNA Sierpinski Triangles,”Public Library of Science Biology 2(12): e424 (2004). 5. Rothemund, P.W.K., Ekani-Nkodo, A., Papadakis, N., Kumar, A., Fygenson, D.K., and Winfree, E., “Design and Characterization of Programmable DNA Nanotubes,” Journal of the American Chemical Society 126(50): 16344-16353 (2004). Other Significant Publications: 1. Dirks, R.M., Lin, M., Winfree, E., and Pierce, N. A., “Paradigms for Computational Nucleic Acid Design,” Nucleic Acid Research 32(4): 1392-1403 (2004). -
Algorithmic Self-Assembly of DNA
Algorithmic Self-Assembly of DNA Thesis by Erik Winfree In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy I T U T E O T F S N T I E C A I H N N R O O 1891 L F O I L G A Y C California Institute of Technology Pasadena, California 1998 (Submitted May 19, 1998) ii c 1998 Erik Winfree All Rights Reserved iii Acknowledgements This thesis reports an unusual and unexpected journey through intellectual territory entirely new to me. Who is prepared for such journeys? I was not. Thus my debt is great to those who have helped me along the way, without whose help I would have been completely lost and uninspired. There is no way to give sufficient thanks to my advisor, John Hopfield. His encouragement for me to get my feet wet, and his advice cutting to the bone of each issue, have been invaluable. John’s policy has been, in his own words, to give his students “enough rope to hang themselves with.” But he knows full well that a lot of rope is needed to weave macrame. Perhaps the only possible repayment is in kind: to maintain a high standard of integrity, and when my turn comes, to provide a nurturing environment for other young minds. Len Adleman and Ned Seeman have each been mentors during my thesis work. In many ways, my research can be seen as the direct offspring of their work, combining the notion of using DNA for computation with the ability to design DNA structures with artificial topology.