The Effect of Sulfide on Comon Marine Species
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
1 Marinobacter Hydrocarbonoclasticus
International Journal of Systematic Bacteriology (1998), 48, 1445-1 448 Printed in Great Britain ~ -~~~~~~ 1- Transfer of Pseudomonas nautica to L -~ 1 Marinobacter hydrocarbonoclasticus Cathrin Sproer, Elke Lang, Petra Hobeck, Jutta Burghardt, Erko Stackebrandt and B. J. Tindall Author for correspondence: B. J. Tindall. Tel: +49 531 2616 224. Fax: +49 531 2616 418. e-mail: bti@ gbf.de ~ DSMZ-Deutsche Sammlung A combination of genotypic and phenotypic properties (a polyphasic "On Mikroorganismen und taxonomic approach) was used to determine the relatedness between the type Zellkulturen GmbH, Mascheroder Weg 1b, strains of Pseudomonas nautica Bauman et a/. 1982 and Marinobacter D-38124 Braunschweig, hydrocarbonoc/asticusGauthier et a/. 1992, which were originally found to be Germany highly related by partial 16s rDNA sequence analysis. Analysis of genotypic properties, such as comparison of the almost complete 165 rDNA sequences, base composition of the total genomic DNA and DNA-DNA hybridization revealed that the two strains were highly similar and should be considered members of the same species. The phenotypic properties, such as the physiology and chemotaxonomic data (i.e. fatty acid composition, polar lipid patterns and respiratory lipoquinone content), confirmed the genotypic evaluation, and has lead to the proposal for a unification of the two species, Pseudomonas nautica (DSM 50418') and Marinobacter hydrocarbonodasticus (DSM 8798T)as Marinobacter hydrocarbonoclasticus. Keywords: Marinobacter hil~drocarbonoclasticus, Pseudomonas nautica, 16s rRN A sequence, chemotaxonomy, taxonomy Baumann et a/. (1972) described aerobic, oxidase- to members of the Pseudomonas aeruginosa rRNA positive. Gram-negative and motile strains which branch of the rRNA superfamily I (De Ley, 1978), showed a high degree of physiological similarity, but with the remaining species being transferred to other were different from other members of the genus genera, e .g . -
1 Microbial Transformations of Organic Chemicals in Produced Fluid From
Microbial transformations of organic chemicals in produced fluid from hydraulically fractured natural-gas wells Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Morgan V. Evans Graduate Program in Environmental Science The Ohio State University 2019 Dissertation Committee Professor Paula Mouser, Advisor Professor Gil Bohrer, Co-Advisor Professor Matthew Sullivan, Member Professor Ilham El-Monier, Member Professor Natalie Hull, Member 1 Copyrighted by Morgan Volker Evans 2019 2 Abstract Hydraulic fracturing and horizontal drilling technologies have greatly improved the production of oil and natural-gas from previously inaccessible non-permeable rock formations. Fluids comprised of water, chemicals, and proppant (e.g., sand) are injected at high pressures during hydraulic fracturing, and these fluids mix with formation porewaters and return to the surface with the hydrocarbon resource. Despite the addition of biocides during operations and the brine-level salinities of the formation porewaters, microorganisms have been identified in input, flowback (days to weeks after hydraulic fracturing occurs), and produced fluids (months to years after hydraulic fracturing occurs). Microorganisms in the hydraulically fractured system may have deleterious effects on well infrastructure and hydrocarbon recovery efficiency. The reduction of oxidized sulfur compounds (e.g., sulfate, thiosulfate) to sulfide has been associated with both well corrosion and souring of natural-gas, and proliferation of microorganisms during operations may lead to biomass clogging of the newly created fractures in the shale formation culminating in reduced hydrocarbon recovery. Consequently, it is important to elucidate microbial metabolisms in the hydraulically fractured ecosystem. -
Marinobacter Aquaeolei Sp. Nov., a Halophilic Bacterium Isolated from a Vietnamese Oil- Producing Well
lnternational Journal of Systematic Bacteriology (1999), 49, 367-375 Printed in Great Britain Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil- producing well Nguyen 6. Huu,' Ewald B. M. Denner,' Dang T. C. Ha,' Gerhard Wanner3 and Helga Stan-Lotter4 Author for correspondence: Helga Stan-Lotter. Tel: +43 662 8044 5756. Fax: +43 662 8044 144. e-mail : helgastan-lo tter @ sbg.ac.at 1 Institute of Biotechnology, Several strains of moderately halophilic and mesophilic bacteria were isolated National Center for at the head of an oil-producing well on an offshore platform in southern Natural Science and Technology, Nghia do, Tu Vietnam. Cells were Gram-negative, non-spore-forming, rod-shaped and motile liem, Hanoi, Vietnam by means of a polar f lagellum. Growth occurred at NaCl concentrations 2 lnstitut fur Mikrobiologie between 0 and 20%; the optimum was 5% NaCl. One strain, which was und Genetik, Universitdt designated VT8l, could degrade n-hexadecane, pristane and some crude oil Wien, Dr Bohrgasse 9, components. It grew anaerobically in the presence of nitrate on succinate, A-1030 Wien, Austria citrate or acetate, but not on glucose. Several organic acids and amino acids 3 Botanisches lnstitut der were utilized as sole carbon and energy sources. The major components of its Universitdt Munchen, Menzinger Str. 67, D-80638 cellular fatty acids were Clzr0 3-OH, c16:1 09c, c16:o and C18:1 w9c. The DNA G+C Munchen, Germany content was 557 mol0/o. 165 rDNA sequence analysis indicated that strain VT8T 4 lnstitut fur Genetik und was closely related to Marinobacter sp. -
Marinobacter Maroccanus Sp. Nov., a Moderately Halophilic Bacterium Isolated from a Saline Soil
Full PDF (including article, references, figures, tables) Click here to download Full PDF (including article, references, figures, tables) Marinobacter maroccanus.pdf 1 Marinobacter maroccanus sp. nov., a moderately halophilic bacterium 2 isolated from a saline soil 3 4 Nadia Boujida,1† Montserrat Palau,2† Saoulajan Charfi,1 Àngels Manresa,2 Nadia Skali 5 Senhaji,1 Jamal Abrini,1 David Miñana-Galbis2* 6 7 Author affiliations: 1Biotechnology and Applied Microbiology Research Group, 8 Department of Biology, Faculty of Sciences, University Abdelmalek Essaâdi, BP2121, 9 93002 Tetouan, Morocco; 2Secció de Microbiologia, Dept. Biologia, Sanitat i Medi 10 Ambient, Facultat de Farmàcia i Ciències de l'Alimentació, Universitat de Barcelona, Av. 11 Joan XXIII, 27-31, 08028 Barcelona, Catalonia, Spain. 12 13 †These authors contributed equally to this work. 14 15 *Correspondence: David Miñana-Galbis, [email protected] 16 17 Keywords: Marinobacter maroccanus sp. nov.; halophilic bacterium. 18 19 The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA and rpoD gene 20 sequences and the whole genome shotgun project of strain N4T are MG563241, 21 MG551593, and PSSX01000000, respectively. 22 1 23 Abstract 24 25 During the taxonomic investigation of exopolymer producing halophilic bacteria, a rod- 26 shaped, motile, Gram-stain-negative, aerobic, halophilic bacterium, designated strain 27 N4T, was isolated from a natural saline soil located in the northern Morocco. The optimal 28 growth of the isolate was at 30–37 ºC and at pH 6.0–9.0, in the presence of 5–7% (w/v) 29 NaCl. Useful tests for the phenotypic differentiation of strain N4T from other Marinobacter 30 species included α-chymotrypsin and α-glucosidase activities and the carbohydrate T 31 assimilation profile. -
Colwellia and Marinobacter Metapangenomes Reveal Species
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.28.317438; this version posted September 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Colwellia and Marinobacter metapangenomes reveal species-specific responses to oil 2 and dispersant exposure in deepsea microbial communities 3 4 Tito David Peña-Montenegro1,2,3, Sara Kleindienst4, Andrew E. Allen5,6, A. Murat 5 Eren7,8, John P. McCrow5, Juan David Sánchez-Calderón3, Jonathan Arnold2,9, Samantha 6 B. Joye1,* 7 8 Running title: Metapangenomes reveal species-specific responses 9 10 1 Department of Marine Sciences, University of Georgia, 325 Sanford Dr., Athens, 11 Georgia 30602-3636, USA 12 13 2 Institute of Bioinformatics, University of Georgia, 120 Green St., Athens, Georgia 14 30602-7229, USA 15 16 3 Grupo de Investigación en Gestión Ecológica y Agroindustrial (GEA), Programa de 17 Microbiología, Facultad de Ciencias Exactas y Naturales, Universidad Libre, Seccional 18 Barranquilla, Colombia 19 20 4 Microbial Ecology, Center for Applied Geosciences, University of Tübingen, 21 Schnarrenbergstrasse 94-96, 72076 Tübingen, Germany 22 23 5 Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, 24 USA 25 26 6 Integrative Oceanography Division, Scripps Institution of Oceanography, UC San 27 Diego, La Jolla, CA 92037, USA 28 29 7 Department of Medicine, University of Chicago, Chicago, IL, USA 30 31 8 Josephine Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA, USA 32 33 9Department of Genetics, University of Georgia, 120 Green St., Athens, Georgia 30602- 34 7223, USA 35 36 *Correspondence: Samantha B. -
Marinobacter Alkaliphilus Sp. Nov., a Novel Alkaliphilic Bacterium Isolated
Extremophiles (2005) 9:17–27 DOI 10.1007/s00792-004-0416-1 ORIGINAL PAPER Ken Takai Æ Craig L. Moyer Æ Masayuki Miyazaki Yuichi Nogi Æ Hisako Hirayama Æ Kenneth H. Nealson Koki Horikoshi Marinobacter alkaliphilus sp. nov., a novel alkaliphilic bacterium isolated from subseafloor alkaline serpentine mud from Ocean Drilling Program Site 1200 at South Chamorro Seamount, Mariana Forearc Received: 26 May 2004 / Accepted: 23 July 2004 / Published online: 19 August 2004 Ó Springer-Verlag 2004 Abstract Novel alkaliphilic, mesophilic bacteria were M. hydrocarbonoclasticus strain SP.17T, while DNA– isolated from subseafloor alkaline serpentine mud from DNA hybridization demonstrated that the new isolate the Ocean Drilling Program (ODP) Hole 1200D at a could be genetically differentiated from the previously serpentine mud volcano, South Chamorro Seamount in described species of Marinobacter. Based on the physi- the Mariana Forearc. The cells of type strain ological and molecular properties of the new isolate, we ODP1200D-1.5T were motile rods with a single polar propose the name Marinobacter alkaliphilus sp. nov., flagellum. Growth was observed between 10 and 45– type strain: ODP1200D-1.5T (JCM12291T and ATCC 50°C (optimum temperature: 30–35°C, 45-min doubling BAA-889T). time), between pH 6.5 and 10.8–11.4 (optimum: pH 8.5– 9.0), and between NaCl concentrations of 0 and 21% (w/ Keywords Alkaliphilic Æ Facultatively anaerobic Æ v) (optimum NaCl concentration: 2.5–3.5%). The isolate Ocean Drilling Program Æ Serpentine mud Æ was a facultatively anaerobic heterotroph utilizing var- Subseafloor biosphere ious complex substrates, hydrocarbons, carbohydrates, organic acids, and amino acids. -
Host-Specific Adaptation Governs the Interaction of the Marine Diatom, Pseudo-Nitzschia and Their Microbiota
The ISME Journal (2014) 8, 63–76 & 2014 International Society for Microbial Ecology All rights reserved 1751-7362/14 www.nature.com/ismej ORIGINAL ARTICLE Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota Marilou P Sison-Mangus1,2, Sunny Jiang1, Kevin N Tran1 and Raphael M Kudela2 1Department of Civil and Environmental Engineering, 716E Engineering Tower, Civil and Environmental Engineering, University of California, Irvine, Irvine, CA, USA and 2Department of Ocean Sciences and Institute for Marine Sciences, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, USA The association of phytoplankton with bacteria is ubiquitous in nature and the bacteria that associate with different phytoplankton species are very diverse. The influence of these bacteria in the physiology and ecology of the host and the evolutionary forces that shape the relationship are still not understood. In this study, we used the Pseudo-nitzschia–microbiota association to determine (1) if algal species with distinct domoic acid (DA) production are selection factors that structures the bacterial community, (2) if host-specificity and co-adaptation govern the association, (3) the functional roles of isolated member of microbiota on diatom–hosts fitness and (4) the influence of microbiota in changing the phenotype of the diatom hosts with regards to toxin production. Analysis of the pyrosequencing-derived 16S rDNA data suggests that the three tested species of Pseudo-nitzschia, which vary in toxin production, have phylogenetically distinct bacterial communities, and toxic Pseudo-nitzschia have lower microbial diversity than non-toxic Pseudo- nitzschia. Transplant experiments showed that isolated members of the microbiota are mutualistic to their native hosts but some are commensal or parasitic to foreign hosts, hinting at co-evolution between partners. -
In Marinobacter
microorganisms Article Loss of Motility as a Non-Lethal Mechanism for Intercolony Inhibition (“Sibling Rivalry”) in Marinobacter Ricardo Cruz-López 1 , Piotr Kolesinski 1 , Frederik De Boever 2 , David H. Green 2 , Mary W. Carrano 1 and Carl J. Carrano 1,* 1 Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182-1030, USA; [email protected] (R.C.-L.); [email protected] (P.K.); [email protected] (M.W.C.) 2 SAMS, Scottish Marine Institute, Oban, Argyll PA37 1QA, UK; [email protected] (F.D.B.); [email protected] (D.H.G.) * Correspondence: [email protected] Abstract: Bacteria from the genus Marinobacter are ubiquitous throughout the worlds’ oceans as “opportunitrophs” capable of surviving a wide range of conditions, including colonization of surfaces of marine snow and algae. To prevent too many bacteria from occupying this ecological niche simultaneously, some sort of population dependent control must be operative. Here, we show that while Marinobacter do not produce or utilize an acylhomoserine lactone (AHL)-based quorum sensing system, “sibling” colonies of many species of Marinobacter exhibit a form of non-lethal chemical communication that prevents colonies from overrunning each other’s niche space. Evidence suggests that this inhibition is the result of a loss in motility for cells at the colony interfaces. Although not the signal itself, we have identified a protein, glycerophosphoryl diester phosphodiesterase, that is enriched in the inhibition zone between the spreading colonies that may be part of the overall response. Citation: Cruz-López, R.; Kolesinski, Keywords: sibling rivalry; Marinobacter; bacteriocins; quorum sensing; motility P.; De Boever, F.; Green, D.H.; Carrano, M.W.; Carrano, C.J. -
Characterization of Hydrocarbonoclastic Bacterial Communities from Mangrove Sediments in Guanabara Bay, Brazil
Research in Microbiology 157 (2006) 752–762 www.elsevier.com/locate/resmic Characterization of hydrocarbonoclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil Elcia Margareth S. Brito a,b,∗, Rémy Guyoneaud b, Marisol Goñi-Urriza b, Antony Ranchou-Peyruse b, Arnaud Verbaere b, Miriam A.C. Crapez d, Julio César A. Wasserman a,c, Robert Duran b a Departamento de Geoquímica Ambiental, Universidade Federal Fluminense, RJ, Brazil b Laboratoire d’Ecologie Moleculaire, EA3525, Université de Pau et des Pays de l’Adour, Pau, France c Programa de Pós-Graduação em Ciência Ambiental/LAGEMAR, Universidade Federal Fluminense, RJ, Brazil d Departamento de Biologia Marinha, Universidade Federal Fluminense, RJ, Brazil Received 3 November 2005; accepted 20 March 2006 Available online 4 April 2006 Abstract Hydrocarbonoclastic bacterial communities inhabiting mangrove sediments were characterized by combining molecular and culture-dependent approaches. Surface sediments were collected at two sampling sites in Guanabara Bay (Rio de Janeiro, Brazil) and used to inoculate in vitro en- richment cultures containing crude oil to obtain hydrocarbonoclastic bacterial consortia. In parallel, in situ mesocosms (located in the Guapimirim mangrove) were contaminated with petroleum. Comparison of bacterial community structures of the different incubations by T-RFLP analyses showed lower diversity for the enrichment cultures than for mesocosms. To further characterize the bacterial communities, bacterial strains were isolated in media containing hydrocarbon compounds. Analysis of 16S rRNA encoding sequences showed that the isolates were distributed within 12 distinct genera. Some of them were related to bacterial groups already known for their capacity to degrade hydrocarbons (such as Pseudomonas, Marinobacter, Alcanivorax, Microbulbifer, Sphingomonas, Micrococcus, Cellulomonas, Dietzia,andGordonia groups). -
Diversity and Dynamics of Bacterial Communities in Early Life Stages of the Caribbean Coral Porites Astreoides
The ISME Journal (2012) 6, 790–801 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Diversity and dynamics of bacterial communities in early life stages of the Caribbean coral Porites astreoides Koty H Sharp1,2, Dan Distel2 and Valerie J Paul1 1Smithsonian Marine Station, Fort Pierce, FL, USA and 2Ocean Genome Legacy, Ipswich, MA, USA In this study, we examine microbial communities of early developmental stages of the coral Porites astreoides by sequence analysis of cloned 16S rRNA genes, terminal restriction fragment length polymorphism (TRFLP), and fluorescence in situ hybridization (FISH) imaging. Bacteria are associated with the ectoderm layer in newly released planula larvae, in 4-day-old planulae, and on the newly forming mesenteries surrounding developing septa in juvenile polyps after settlement. Roseobacter clade-associated (RCA) bacteria and Marinobacter sp. are consistently detected in specimens of P. astreoides spanning three early developmental stages, two locations in the Caribbean and 3 years of collection. Multi-response permutation procedures analysis on the TRFLP results do not support significant variation in the bacterial communities associated with P. astreoides larvae across collection location, collection year or developmental stage. The results are the first evidence of vertical transmission (from parent to offspring) of bacteria in corals. The results also show that at least two groups of bacterial taxa, the RCA bacteria and Marinobacter, are consistently associated with juvenile P. astreoides against a complex background of microbial associations, indicating that some components of the microbial community are long-term associates of the corals and may impact host health and survival. -
Marinobacter Dominates the Bacterial Community of the Ostreococcus
Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture Josselin Lupette, Raphaël Lami, Marc Krasovec, Nigel Grimsley, Hervé Moreau, Gwenaël Piganeau, Sophie Sanchez-Ferandin To cite this version: Josselin Lupette, Raphaël Lami, Marc Krasovec, Nigel Grimsley, Hervé Moreau, et al.. Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture. Frontiers in Microbiology, Frontiers Media, 2016, 7, pp.1414. 10.3389/fmicb.2016.01414. hal-01373902 HAL Id: hal-01373902 https://hal.sorbonne-universite.fr/hal-01373902 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fmicb-07-01414 September 3, 2016 Time: 12:48 # 1 ORIGINAL RESEARCH published: 07 September 2016 doi: 10.3389/fmicb.2016.01414 Marinobacter Dominates the Bacterial Community of the Ostreococcus tauri Phycosphere in Culture Josselin Lupette1,2,3, Raphaël Lami4,5, Marc Krasovec1,2, Nigel Grimsley1,2, Hervé Moreau1,2, Gwenaël Piganeau1,2 and Sophie Sanchez-Ferandin1,2* 1 Sorbonne Universités, Université -
The Influence of Bacteria on the Adaptation to Changing Environments in Ectocarpus : a Systems Biology Approach Hetty Kleinjan
The influence of bacteria on the adaptation to changing environments in Ectocarpus : a systems biology approach Hetty Kleinjan To cite this version: Hetty Kleinjan. The influence of bacteria on the adaptation to changing environments in Ectocar- pus : a systems biology approach. Molecular biology. Sorbonne Université, 2018. English. NNT : 2018SORUS267. tel-02868508 HAL Id: tel-02868508 https://tel.archives-ouvertes.fr/tel-02868508 Submitted on 15 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Sorbonne Université ED 227 - Sciences de la Nature et de l'Homme : écologie & évolution Laboratoire de Biologie Intégrative des Modèles Marins Equipe Biologie des algues et interactions avec l'environnement The influence of bacteria on the adaptation to changing environments in Ectocarpus: a systems biology approach Par Hetty KleinJan Thèse de doctorat en Biologie Marine Dirigée par Simon Dittami et Catherine Boyen Présentée et soutenue publiquement le 24 septembre 2018 Devant un jury composé de : Pr. Ute Hentschel Humeida, Rapportrice GEOMAR, Kiel, Germany Dr. Suhelen Egan, Rapportrice UNSW Sydney, Australia Dr. Fabrice Not, Examinateur Sorbonne Université – CNRS Dr. David Green, Examinateur SAMS, Oban, UK Dr. Aschwin Engelen, Examinateur CCMAR, Faro, Portugal Dr.