Protein Sorting

Total Page:16

File Type:pdf, Size:1020Kb

Protein Sorting Microtubules or actions of microtubule motor protein → polymerization, Harvey Lodish • Arnold Berk • Paul Matsudaira • Chris A. Kaiser • Monty Krieger • Matthew P. Scott • depolymerization → movement Lawrence Zipursky • James Darnell MTOC (microtubule-organizing center): contributing to cell motility; Located near the nucleus, assembly an orientation of microtubules ,the direction of vesicle trafficking, and orientation of organelles. Organelles and vesicles are transported along microtubules, the MTOC becomes Molecular Cell Biology responsible for establishing the polarity of cell an direction of cytoplasmic processes in both interphase and mitotic cells. Fifth Edition Chapter 20: Cytoskeleton II: Microtubules Kinesin powered movement of a vesicle along a microtubule Copyright © 2004 by W. H. Freeman & Company Microtuble organized around the MTOC and spindle Cells contain stable and unstable microtubules (MTs). --Orientation of cellular SEM of the surface of ciliated microtubule epithelium of rabbit oviduct most microtubules have a constant orientation relative to MTOC (-) end: close to the MTOC (+) end: distal to the MTOC Long-distance movement microtubule-organizing center is “-” Assembly and disassembly cause microtubules → probe →…. 1 Heterodimeric tubulin subunits compose the wall of a MT. 1 2 3 Tubulin subunit are formed by α and β One subunit bind to two GTP, has GTPase Fig 5-29 activity. 55kDa monomers in all eukaryotes γ-tubulin are formed by α and β. In mammals at least 6 alpha and 6 beta isoforms have been GTP identified Irreversibl reversibly Polymer of globular Tubulin → arranged → microtubule The proteins are highly conserved y, does not Two populations of MT: (75% homology between yeast hydrolyze 1. stable, long-lived: nonreplicating cell; cilia, flagella, RBC and and human) add plaelets pass through small vessel, axon Most variability is found in the C- terminal region of the molecules 2. unstable, short-lived; assemble and disassemble quickly, replicating and is likely to affect interactions _ + cell with accessory proteins A tubulin homologue, FtsZ, is expressed in prokaryotes Arrangement of protofilaments in singlet, doublet, and triplet MTs. + α β β-GTP GTP GTP α-GTP tubulin heterodimer β-GDP − α-GTP α β α β seam GTP GDP GTP GTP The tubule is a microtubule 3-start helix complete (−) protofilament (+) microtubule cylinder, made of Thus the minus end of an a subunit may serve as GAP (GTPase activating protein) 13 protofilaments for b-tubulin of the adjacent dimer in a protofilament 2 Addition of MT fragments demonstrates polarity of tubulin Temperature affects whether MTs assemble or disassemble. polymerization. (MT assembly and disassembly take place preferentially at the + end) High Temp: assembly (need GTP) Low Temp: disassembly Slowed 2 fold than + Cc: critical concentration Stages in assembly of MTs. Up: dimers polymerize into microtubules; below: depolymerize Free αβ tubulin dimers →short protofilaments → unstable and quickly associate more stable curved sheets → wraps around microtubule with 13 protofilaments →composing the microtuble wall → incorporate αβ (β hydrolysis GTP) → bind + end Fluroresence microscopy reveals in vivo growth and shrinkage of Cryoelectron microscopy allows individual MTs. observation of disassembled MTs. Rate of MT growth in vitro is much slower than shrinkage (收 縮). 急轉直下 縮短 Fluorescently-labeled tubulin microinjection into fibroblasts. Microtubule is dynamic instability. Two factor influence the stability of MT: 1. Cc (critical concentration): > or = Cc → growth; < Cc → shrink (收縮). 2. β subunit bind to GTP or GDP. Disassembly quick (7μm/min) Assembly slowly (1μm/min) 3 Dynamic instability model of MT growth and shrinkage (β subunit --properties of polymerization/depolymerization of microtubule (fig 19-10) bind to GTP/GDP). --with a nuclei: accelerates the initial polymerization rate -- [tubulin] > Cc polymerization + end is most important for MT [tubulin] < Cc depolymerization (β subunit) growth and shrinkage [tubulin] ~ Cc dynamic -- microtubule assembly/disassembly occurs preferentially at the (+) end Dissociation of GDP-tubulin dimer >>>> GTP-tubulin dimer When GDP-tubulin → depolymerizes and unstabilized When GTP-tubulin add to + end → rescued shortening MT. Two factor influence stability of MT: 1. Cc 2. GTP or GDP –β subunit Numerous proteins regulate MT dynamics and cross-linkage to other Spacing of MTs depends on length of projection domain in structures. bound MAPs. MAPs: microtubule-associated protein, influence the assembly and stability of MAP2 and Tau can regulate microtubule spacing microtubule and their related structure. MAP2 Tau Basis of their function has two groups: When MT bundles are induced in cells overexpressing MAP2 (left) and Basic microtubule binding and acidic projection domain tau (right), the bundles formed by MAP2 have wider spacing between MT than those formed by tau. MAP2 COOH end binds along Cross-link MT the MT lattice while NH2 terminal end projects out from the microtubule Tau binds similarly but its projection arm is much shorter than arm of MAP2 Related with Alzheimer’s disease 4 Colchicine and other drugs disrupt MT dynamics. MAP kinase (MAPK): A key enzyme for phosphorylating MAPs → phosphorylated MAPs → unable to bind to microtubules Cyclin-dependent kinase → phosphorylation of MAP4 → controlling the activity of various proteins in the course of the cell cylce. MTs can assemble in vitro from purified tubulin, but MAPs are found with MTs isolated from cells; Blocked at metaphase most found only in brain tissue; MAP4 has wider distribution Have globular head domain that attaches to MT side & filamentous tail protruding from MT surface May interconnect MTs to help form bundles (cross- bridges), increase MT stability, alter MT rigidity, influence MT assembly rate Drugs involved in microtubule dynamics MTOCs orient most MTs and determine cell polarity. (1) colchicines/colcemid: mitotic inhibitors --its effect is reversible --binds to tubulin dimer blocks the addition or removal of other tubulin subunits to the ends of microtubule disruption of microtubule dynamics --cells are blocked at “metaphase” after colchicines treatment cytogenetic studies cell synchronization (時間一致) (2) taxol, vinblastin: --bind to microtubules and stablize microtubule by inhibiting the lengthening and shortening of microtubules --used for cancer treatment 5 MTOCs orient most MTs and determine cell polarity. MT (doublets) are found in cilia or flagella that are used for cell movement MT in axon are plus end out, MT in dendrites are plus and minus ends out. These MT are not attached to any nucleating structure. Cells have stable (half life >1 hr) and unstable/dynamic (half- life = 5-10 min) microtubules. These subsets differ in post- translational modification of tubulin. The centrosome (MTOC) is usually located near the nucleus during interphase. Microtubules grow out from the MTOC Centrosome contains a pair of orthogonal (直角) centrioles in The γ-tubulin ring complex (γ-TuRC) nucleates polymerization most animal cells. of tubulin subunits. MTOC = microtubule organizing center MTOC organization: pericentriolar Microtubules assemble from the MTOC. material (including protein and γ In mammals, the centrosome (中心體) is tubulin) →nucleating (以核為 the MTOC, with the MT minus (-) ends 中心) microtubule assembly → inserted into the centrosome and the plus anchoring Stain with an anti-gamma tubulin antibody. (+) ends directed towards the cell Gamma-tubulin at initiates synthesis at one γ-TuRC the has 8 polypeptides and periphery. Centrosome is a collection of end (-) (green). 25 nm diameter microtubule orienting proteins within a Under Cc, γ-TuRC directly cloud of material termed the nucleate microtubule assembly pericentriolar or centrosomal matrix. Sometimes, inside will be a pair of γ-TuRC Formed only one end (-). centrioles (中心粒) that serve to organize the matrix. The microtubules emanate from γ-tubulin ring complexes inside the centrosome. Centrioles (C) a pair, C and C’ Pericentriolar (PC) matrix: γ-tubulin & pericentrin; surrounding the centrioles 6 The center of the center of the cell… Microtubules nucleated by the γ-tubulin ring complex Centrioles in a centrosome connect to centromeres appear capped at one end, assumed from other data to MTOC=microtubule organizing center be the minus end. γ-Tubulin, which is homologous to α & β tubulins, nucleates microtubule assembly within the centrosome. Several (12-14) copies of γ-tubulin associate in a complex with other proteins called “grips” (gamma ring proteins). This γ-tubulin ring complex is seen by EM to have an open ring-like structure resembling a lock washer, capped on one side. Grip proteins of the cap may be involved in mediating binding to the lockwasher centrosome. shape Phosphorylation of a conserved tyrosine residue of γ-tubulin has cap been shown to regulate microtubule nucleation in yeast cells. γ-tubulin ring complex Cytoplasmic organelles and vesicles are organized by MTs. Kinesin and dynenin powered movements Colocalization of endoplasmic DiOC6, ER reticulum membranes and cytosolic binding MTs. fluorescent Others organelles also colocalized. dye Anti-tubulin Progression of organelles along axons requires microtubules and the motor The alignment of the ER network proteins: kinesin and dynein. and microtubules in many but not all regions of the cytoplasm is Also dependent on motor proteins: evident because the cell has Transport of vesicles for exocytosis/endocytosis or between the endoplasmic sparse
Recommended publications
  • Mechanical Design of Translocating Motor Proteins
    Cell Biochem Biophys (2009) 54:11–22 DOI 10.1007/s12013-009-9049-4 REVIEW PAPER Mechanical Design of Translocating Motor Proteins Wonmuk Hwang Æ Matthew J. Lang Published online: 19 May 2009 Ó Humana Press Inc. 2009 Abstract Translocating motors generate force and move Introduction along a biofilament track to achieve diverse functions including gene transcription, translation, intracellular cargo Motor proteins form distinct classes in the protein universe transport, protein degradation, and muscle contraction. as they can convert chemical energy directly into mechan- Advances in single molecule manipulation experiments, ical work. Among them, translocating motors move along structural biology, and computational analysis are making biopolymer tracks, such as nucleic acids, polypeptides, or it possible to consider common mechanical design princi- quaternary biofilament structures like F-actin or microtu- ples of these diverse families of motors. Here, we propose a bule (Kolomeisky and Fisher proposed the term ‘‘translo- mechanical parts list that include track, energy conversion case’’ for these motors [41]. However, we prefer to use machinery, and moving parts. Energy is supplied not just ‘‘translocating motor,’’ since translocase refers to mem- by burning of a fuel molecule, but there are other sources brane-bound motors such as SecA, whose function is to or sinks of free energy, by binding and release of a fuel or translocate a protein across the membrane [24]). Movement products, or similarly between the motor and the track. is an essential part of their function. For example, RNA Dynamic conformational changes of the motor domain can polymerase (RNAP) walks along the DNA molecule and be regarded as controlling the flow of free energy to and transcribes the genetic code into RNA [25].
    [Show full text]
  • Theory of Cytoskeletal Reorganization During Crosslinker-Mediated Mitotic Spindle Assembly
    bioRxiv preprint doi: https://doi.org/10.1101/419135; this version posted March 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Theory of cytoskeletal reorganization during crosslinker-mediated mitotic spindle assembly A. R. Lamson, C. J. Edelmaier, M. A. Glaser, and M. D. Betterton Abstract Cells grow, move, and respond to outside stimuli by large-scale cytoskeletal reorganization. A prototypical example of cytoskeletal remodeling is mitotic spindle assembly, during which micro- tubules nucleate, undergo dynamic instability, bundle, and organize into a bipolar spindle. Key mech- anisms of this process include regulated filament polymerization, crosslinking, and motor-protein activity. Remarkably, using passive crosslinkers, fission yeast can assemble a bipolar spindle in the absence of motor proteins. We develop a torque-balance model that describes this reorganization due to dynamic microtubule bundles, spindle-pole bodies, the nuclear envelope, and passive crosslink- ers to predict spindle-assembly dynamics. We compare these results to those obtained with kinetic Monte Carlo-Brownian dynamics simulations, which include crosslinker-binding kinetics and other stochastic effects. Our results show that rapid crosslinker reorganization to microtubule overlaps facilitates crosslinker-driven spindle assembly, a testable prediction for future experiments. Combin- ing these two modeling techniques, we illustrate a general method for studying cytoskeletal network reorganization. 1 bioRxiv preprint doi: https://doi.org/10.1101/419135; this version posted March 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved.
    [Show full text]
  • Construction and Loss of Bacterial Flagellar Filaments
    biomolecules Review Construction and Loss of Bacterial Flagellar Filaments Xiang-Yu Zhuang and Chien-Jung Lo * Department of Physics and Graduate Institute of Biophysics, National Central University, Taoyuan City 32001, Taiwan; [email protected] * Correspondence: [email protected] Received: 31 July 2020; Accepted: 4 November 2020; Published: 9 November 2020 Abstract: The bacterial flagellar filament is an extracellular tubular protein structure that acts as a propeller for bacterial swimming motility. It is connected to the membrane-anchored rotary bacterial flagellar motor through a short hook. The bacterial flagellar filament consists of approximately 20,000 flagellins and can be several micrometers long. In this article, we reviewed the experimental works and models of flagellar filament construction and the recent findings of flagellar filament ejection during the cell cycle. The length-dependent decay of flagellar filament growth data supports the injection-diffusion model. The decay of flagellar growth rate is due to reduced transportation of long-distance diffusion and jamming. However, the filament is not a permeant structure. Several bacterial species actively abandon their flagella under starvation. Flagellum is disassembled when the rod is broken, resulting in an ejection of the filament with a partial rod and hook. The inner membrane component is then diffused on the membrane before further breakdown. These new findings open a new field of bacterial macro-molecule assembly, disassembly, and signal transduction. Keywords: self-assembly; injection-diffusion model; flagellar ejection 1. Introduction Since Antonie van Leeuwenhoek observed animalcules by using his single-lens microscope in the 18th century, we have entered a new era of microbiology.
    [Show full text]
  • Review of Molecular Motors
    REVIEWS CYTOSKELETAL MOTORS Moving into the cell: single-molecule studies of molecular motors in complex environments Claudia Veigel*‡ and Christoph F. Schmidt§ Abstract | Much has been learned in the past decades about molecular force generation. Single-molecule techniques, such as atomic force microscopy, single-molecule fluorescence microscopy and optical tweezers, have been key in resolving the mechanisms behind the power strokes, ‘processive’ steps and forces of cytoskeletal motors. However, it remains unclear how single force generators are integrated into composite mechanical machines in cells to generate complex functions such as mitosis, locomotion, intracellular transport or mechanical sensory transduction. Using dynamic single-molecule techniques to track, manipulate and probe cytoskeletal motor proteins will be crucial in providing new insights. Molecular motors are machines that convert free energy, data suggest that during the force-generating confor- mostly obtained from ATP hydrolysis, into mechanical mational change, known as the power stroke, the lever work. The cytoskeletal motor proteins of the myosin and arm of myosins8,11 rotates around its base at the catalytic kinesin families, which interact with actin filaments and domain11–17, which can cause the displacement of bound microtubules, respectively, are the best understood. Less cargo by several nanometres18 (FIG. 1B). In kinesins, the is known about the dynein family of cytoskeletal motors, switching of the neck linker (~13 amino acids connecting which interact with microtubules. Cytoskeletal motors the catalytic core to the cargo-binding stalk domain) from power diverse forms of motility, ranging from the move- an ‘undocked’ state to a state in which it is ‘docked’ to the ment of entire cells (as occurs in muscular contraction catalytic domain, is the equivalent of the myosin power or cell locomotion) to intracellular structural dynamics stroke10.
    [Show full text]
  • A Standardized Kinesin Nomenclature • Lawrence Et Al
    JCB: COMMENT A standardized kinesin nomenclature Carolyn J. Lawrence,1 R. Kelly Dawe,1,2 Karen R. Christie,3,4 Don W. Cleveland,3,5 Scott C. Dawson,3,6 Sharyn A. Endow,3,7 Lawrence S.B. Goldstein,3,8 Holly V. Goodson,3,9 Nobutaka Hirokawa,3,10 Jonathon Howard,3,11 Russell L. Malmberg,1,3 J. Richard McIntosh,3,12 Harukata Miki,3,10 Timothy J. Mitchison,3,13 Yasushi Okada,3,10 Anireddy S.N. Reddy,3,14 William M. Saxton,3,15 Manfred Schliwa,3,16 Jonathan M. Scholey,3,17 Ronald D. Vale,3,18 Claire E. Walczak,3,19 and Linda Wordeman3,20 1Department of Plant Biology, The University of Georgia, Athens, GA 30602 2Department of Genetics, The University of Georgia, Athens, GA 30602 3These authors contributed equally to this work and are listed alphabetically 4Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305 5Ludwig Institute for Cancer Research, 3080 CMM-East, 9500 Gilman Drive, La Jolla, CA 92093 6Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720 7Department of Cell Biology, Duke University Medical Center, Durham, NC 27710 8Department of Cellular and Molecular Medicine, Howard Hughes Medical Institute, School of Medicine, University of California, San Diego, La Jolla, CA 92093 9Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46628 10Department of Cell Biology and Anatomy, University of Tokyo, Graduate School of Medicine, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan 11Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany 12Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309 13Institute for Chemistry and Cell Biology, Harvard Medical School, Boston, MA 02115 Downloaded from 14Department of Biology and Program in Cell and Molecular Biology, Colorado State University, Fort Collins, CO 80523 15Department of Biology, Indiana University, Bloomington, IN 47405 16Adolf-Butenandt-Institut, Zellbiologie, University of Munich, Schillerstr.
    [Show full text]
  • Tension on the Linker Gates the ATP-Dependent Release of Dynein from Microtubules
    ARTICLE Received 4 Apr 2014 | Accepted 3 Jul 2014 | Published 11 Aug 2014 DOI: 10.1038/ncomms5587 Tension on the linker gates the ATP-dependent release of dynein from microtubules Frank B. Cleary1, Mark A. Dewitt1, Thomas Bilyard2, Zaw Min Htet2, Vladislav Belyy1, Danna D. Chan2, Amy Y. Chang2 & Ahmet Yildiz2 Cytoplasmic dynein is a dimeric motor that transports intracellular cargoes towards the minus end of microtubules (MTs). In contrast to other processive motors, stepping of the dynein motor domains (heads) is not precisely coordinated. Therefore, the mechanism of dynein processivity remains unclear. Here, by engineering the mechanical and catalytic properties of the motor, we show that dynein processivity minimally requires a single active head and a second inert MT-binding domain. Processivity arises from a high ratio of MT-bound to unbound time, and not from interhead communication. In addition, nucleotide-dependent microtubule release is gated by tension on the linker domain. Intramolecular tension sensing is observed in dynein’s stepping motion at high interhead separations. On the basis of these results, we propose a quantitative model for the stepping characteristics of dynein and its response to chemical and mechanical perturbation. 1 Biophysics Graduate Group, University of California, Berkeley, California 94720, USA. 2 Department of Physics, University of California, Berkeley, California 94720, USA. Correspondence and requests for materials should be addressed to A.Y. (email: [email protected]). NATURE COMMUNICATIONS | 5:4587 | DOI: 10.1038/ncomms5587 | www.nature.com/naturecommunications 1 & 2014 Macmillan Publishers Limited. All rights reserved. ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/ncomms5587 ytoplasmic dynein is responsible for nearly all microtubule dynein’s MT-binding domain (MTBD) is located at the end of a (MT) minus-end-directed transport in eukaryotes1.In coiled-coil stalk10.
    [Show full text]
  • Single-Molecule Analysis of a Novel Kinesin Motor Protein
    Single-Molecule Analysis of a Novel Kinesin Motor Protein Jeremy Meinke Advisor: Dr. Weihong Qiu Oregon State University, Department of Physics June 7, 2017 Abstract Kinesins are intracellular motor proteins that transform chemical energy into mechanical energy through ATP hydrolysis to move along microtubules. Kinesin roles can vary among transportation, regulation, and spindle alignment within most cells. Many kinesin have been found to move towards the plus end of microtubules at a steady velocity. For this experiment, we investigate BimC - a kinesin-5 as- sociated with mitotic spindle regulation - under high salt conditions. Using single molecule imaging with Total Internal Reflection Fluorescence Microscopy, we found BimC to be directed towards the minus end of microtubules at a high velocity of 597±214 nm/s (mean±S.D, n=124). BimC then joins the few other kinesin found so far to be minus-end-directed. However, preliminary results at low salt condi- tions suggest that BimC switches towards the plus end. BimC could very well be an early example of a kinesin motor protein that is directionally-dependent upon ionic strength. These results suggest multiple branches of further investigation into directionally-dependent kinesin proteins and what purposes they might have. Contents 1 Introduction 1 1.1 Kinesin Proteins . 1 1.2 Total Internal Reflection Fluorescence Microscopy . 3 1.3 Protein Motion Analysis . 3 2 Methods 5 2.1 Design, Expression, and Purification of BimC . 5 2.2 Single Molecule Imaging . 7 2.3 Analysis of Data/Results . 7 3 Results 9 3.1 Single Molecule Imaging of BimC . 9 3.2 Directionality of BimC in High Salt Conditions .
    [Show full text]
  • 3053.Full.Pdf
    The Journal of Neuroscience, April 1995, 75(4): 3053-3064 The Activation of Protein Kinase A Pathway Selectively Inhibits Anterograde Axonal Transport of Vesicles but Not Mitochondria Transport or Retrograde Transport ~II viva Yasushi Okada, Reiko Sato-Yoshitake, and Nobutaka Hirokawa Department of Anatomy and Cell Biology, Faculty of Medicine, University of Tokyo, Hongo, Tokyo, 113, Japan To shed light on how axonal transport is regulated, we ex- is an especially well developed intracellular organelle transport amined the possible roles of protein kinase A (PKA) in viva system. Many studies have been focused on the mechanismof suggested by our previous work (Sato-Yoshitake et al., this transport, but little is known about its regulation. As a pu- 1992). Pharmacological probes or the purified catalytic tative mechanismfor the regulation, we have proposeda model subunit of PKA were applied to the permeabilized-reacti- from our recent studies (Hirokawa et al., 1990, 1991) that the vated model of crayfish walking leg giant axon, and the anterogrademotor kinesin is decommissionedat the axon ter- effect was monitored by the quantitative video-enhanced minal, and that the retrogrademotor cytoplasmic dynein is trans- light microscopy and the quantitative electron microscopy. ported, presumably in an inactive form, by the anterogradeor- Dibutyryl cyclic AMP caused concentration-dependent ganelle transport to the axon terminal, where it should be transient reduction in the number of anterogradely trans- activated to support the retrograde organelle transport. ported small vesicles, while the retrogradely transported Our present study was undertakento examine this regulation organelles and anterogradely transported mitochondria mechanism.One plausiblemechanism is through protein kinases showed no decrease.
    [Show full text]
  • Motor-Driven Dynamics in Actin-Myosin Networks Loïc Le Goff, François Amblard, Eric Furst
    Motor-Driven Dynamics in Actin-Myosin Networks Loïc Le Goff, François Amblard, Eric Furst To cite this version: Loïc Le Goff, François Amblard, Eric Furst. Motor-Driven Dynamics in Actin-Myosin Networks. Physical Review Letters, American Physical Society, 2001, 88 (1), pp.018101. 10.1103/phys- revlett.88.018101. hal-02415553 HAL Id: hal-02415553 https://hal.archives-ouvertes.fr/hal-02415553 Submitted on 19 Dec 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VOLUME 88, NUMBER 1PHYSICALREVIEWLETTERS7JANUARY 2002 Motor-Driven Dynamics in Actin-Myosin Networks Loïc Le Goff, François Amblard,* and Eric M. Furst† Institut Curie, Physico-Chimie Curie, UMR CNRS/IC 168, 26 rue d’Ulm, 75248 Paris Cedex 05, France (Received 29 May 2001; published 14 December 2001) The effect of myosin motor protein activity on the filamentous actin (F-actin) rheological response is studied using diffusing wave spectroscopy. Under conditions of saturating motor activity, we find an enhancement of longitudinal filament fluctuations corresponding to a scaling of the viscoelastic shear 7͞8 modulus Gd͑v͒ϳv . As the adenosine tri-phosphate reservoir sustaining motor activity is depleted, we find an abrupt transient to a passive, “rigor state” and a return to dissipation dominated by transverse filament modes.
    [Show full text]
  • Theoretical Aspects of Motor Protein Induced Filament Depolymerisation
    Institut f¨ur Theoretische Physik Fakult¨at Mathematik und Naturwissenschaft Technische Universit¨at Dresden Theoretical aspects of motor protein induced filament depolymerisation Dissertation Zur Erlangung des akademischen Grades Doktor der Naturwissenschaften (Dr. rer. nat.) angefertigt am Max Planck Institut f¨ur Physik komplexer Systeme Dresden vorgelegt von Gernot A. Klein Dresden, 2005 Contents 1 Introduction 1 2 The cytoskeleton and motor proteins 5 2.1 Cytoskeletalfilaments . ... 5 2.1.1 Structure and organisation of actin and intermediate filaments . 6 2.1.2 Assembly and structure of microtubules . ..... 8 2.2 Cytoskeletal motor proteins . ..... 10 2.2.1 Myosinanddynein............................. 11 2.2.2 Kinesin ................................... 12 2.3 Microtubuledynamicsandstructures. ....... 14 2.3.1 Force generation by polymerising filaments . ...... 14 2.3.2 Dynamic instability of growing microtubules . ....... 16 2.3.3 Reorganisation of microtubules during mitosis . ......... 17 2.4 Microtubule-depolymerising motor proteins . .......... 18 2.4.1 Properties of kinesin-13 motors . 19 2.4.2 Mechanism of microtubule depolymerisation . ....... 20 2.4.3 Cellularfunctions. .. .. .. .. .. .. .. .. 22 2.5 Theoretical description of motor proteins . ......... 23 2.5.1 Phenomenological approach . 23 2.5.2 Isothermalratchetmodels . 25 2.5.3 Stochastic models on discrete lattices . ....... 26 3 General description of motor induced filament depolymerisation 29 3.1 Filament depolymerisation . ..... 29 i ii Contents 3.1.1 Dynamics of motor densities . 30 3.1.2 Motor induced filament depolymerisation . ..... 31 3.1.3 Processivesubunitremoval . 32 3.2 Steady-statesolutions . 32 3.2.1 Density profiles of motor proteins . 33 3.2.2 Stabilityofsolutions . 34 3.3 Dynamic accumulation of motor proteins . ....... 36 3.3.1 Mechanisms of motor accumulation at filament ends .
    [Show full text]
  • Role of Mitochondria-Cytoskeleton Interactions in the Regulation of Mitochondrial Structure and Function in Cancer Stem Cells
    cells Review Role of Mitochondria-Cytoskeleton Interactions in the Regulation of Mitochondrial Structure and Function in Cancer Stem Cells Jungmin Kim 1 and Jae-Ho Cheong 1,2,3,4,5,* 1 Brain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul 03722, Korea; [email protected] 2 Department of Surgery, Yonsei University Health System, Yonsei University College of Medicine, 50 Yonsei-ro, Seodaemun-gu, Seoul 03722, Korea 3 Yonsei Biomedical Research Institute, Yonsei University College of Medicine, Seoul 03722, Korea 4 Department of Biochemistry & Molecular Biology, Yonsei University College of Medicine, Seoul 03722, Korea 5 Department of Biomedical Systems Informatics, Yonsei University College of Medicine, Seoul 03722, Korea * Correspondence: [email protected]; Tel.: +82-2-2228-2094; Fax: +82-2-313-8289 Received: 17 June 2020; Accepted: 11 July 2020; Published: 14 July 2020 Abstract: Despite the promise of cancer medicine, major challenges currently confronting the treatment of cancer patients include chemoresistance and recurrence. The existence of subpopulations of cancer cells, known as cancer stem cells (CSCs), contributes to the failure of cancer therapies and is associated with poor clinical outcomes. Of note, one of the recently characterized features of CSCs is augmented mitochondrial function. The cytoskeleton network is essential in regulating mitochondrial morphology and rearrangement, which are inextricably linked to its functions, such as oxidative phosphorylation (OXPHOS). The interaction between the cytoskeleton and mitochondria can enable CSCs to adapt to challenging conditions, such as a lack of energy sources, and to maintain their stemness. Cytoskeleton-mediated mitochondrial trafficking and relocating to the high energy requirement region are crucial steps in epithelial-to-mesenchymal transition (EMT).
    [Show full text]
  • An Introduction to Molecular Motors
    An Introduction to Molecular Motors Barry Grant http://mccammon.ucsd.edu/~bgrant/ Cellular Motility is Essential for Life Fertilization Axonal Transport Muscle Contraction Just three families of motor proteins power eukaryotic cellular movement myosin kinesin dynein Cytoskeletal Transport Systems At the molecular level cytoskeletal transport systems consist of four basic components. Motor Track myosin, kinesin microfilaments and dynein and microtubules Cargo Fuel organelles, vesicles, ATP and chromosomes, etc. GTP Microtubules and microfilaments are highly organized within cells and together with motor proteins provide a framework for the redistribution and organization of cellular components. Cargo Track Motor Why Study Cytoskeletal Motor Proteins? Relevance to biology: •Motor systems intersect with almost every facet of cell biology. Relevance to medicine: •Transport defects can cause disease. • Inhibition or enhancement of motor protein activity has therapeutic benefits. Relevance to engineering: •Understanding the design principles of molecular motors will inform efforts to construct efficient nanoscale machines. Motors Are Efficient Nanoscale Machines Kinesin Automobile Size 10-8 m 1m 4 x 10-3 m/hr 105 m/hr Speed 4 x 105 lengths/hr 105 lengths/hr Efficiency ~70% ~10% Non-cytoskeletal motors DNA motors: Helicases, Polymerases Rotary motors: Bacterial Flagellum, F1-F0-ATPase Getting in Scale This Fibroblast is about 100 μM in diameter. A single microtubule is 25nm in diameter. You can also see microfilaments and intermediate filaments. Cytoskeleton Microtubules Protofilament Tubulin Heterodimer α β Key Concept: Directionality Microtubule Microfilament Tubulin Actin Track Polarity •Due to ordered arrangement of asymmetric constituent proteins that polymerize in a head-to-tail manner. •Polymerization occurs preferentially at the + end.
    [Show full text]