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(Rodentia: Ctenodactylidae) from the Miocene of Israel
RESEARCH ARTICLE A Transitional Gundi (Rodentia: Ctenodactylidae) from the Miocene of Israel Raquel López-Antoñanzas1,2*, Vitaly Gutkin3, Rivka Rabinovich4, Ran Calvo5, Aryeh Grossman6,7 1 School of Earth Sciences, University of Bristol, Bristol, United Kingdom, 2 Departamento de Paleobiología, Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain, 3 The Harvey M. Krueger Family Center for Nanoscience and Nanotechnology, The Hebrew University of Jerusalem, Jerusalem, Israel, 4 National Natural History Collections, Institute of Earth Sciences and Institute of Archaeology, The Hebrew University of Jerusalem, Jerusalem, Israel, 5 Geological Survey of Israel, Jerusalem, Israel, 6 Arizona College of Osteopathic Medicine, Midwestern University, Glendale, AZ, United States of America, 7 School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, United States of America * [email protected] Abstract OPEN ACCESS We describe a new species of gundi (Rodentia: Ctenodactylidae: Ctenodactylinae), Sayi- mys negevensis, on the basis of cheek teeth from the Early Miocene of the Rotem Basin, Citation: López-Antoñanzas R, Gutkin V, Rabinovich R, Calvo R, Grossman A (2016) A Transitional Gundi southern Israel. The Rotem ctenodactylid differs from all known ctenodactylid species, (Rodentia: Ctenodactylidae) from the Miocene of including Sayimys intermedius, which was first described from the Middle Miocene of Saudi Israel. PLoS ONE 11(4): e0151804. doi:10.1371/ Arabia. Instead, it most resembles Sayimys baskini from the Early Miocene of Pakistan in journal.pone.0151804 characters of the m1-2 (e.g., the mesoflexid shorter than the metaflexid, the obliquely orien- Editor: Laurent Viriot, Team 'Evolution of Vertebrate tated hypolophid, and the presence of a strong posterolabial ledge) and the upper molars Dentition', FRANCE (e.g., the paraflexus that is longer than the metaflexus). -
Multiple Molecular Evidences for a Living Mammalian Fossil
Multiple molecular evidences for a living mammalian fossil Dorothe´ e Huchon†‡, Pascale Chevret§¶, Ursula Jordanʈ, C. William Kilpatrick††, Vincent Ranwez§, Paulina D. Jenkins‡‡, Ju¨ rgen Brosiusʈ, and Ju¨ rgen Schmitz‡ʈ †Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel; §Department of Paleontology, Phylogeny, and Paleobiology, Institut des Sciences de l’Evolution, cc064, Universite´Montpellier II, Place E. Bataillon, 34095 Montpellier Cedex 5, France; ʈInstitute of Experimental Pathology, University of Mu¨nster, D-48149 Mu¨nster, Germany; ††Department of Biology, University of Vermont, Burlington, VT 05405-0086; and ‡‡Department of Zoology, The Natural History Museum, London SW7 5BD, United Kingdom Edited by Francisco J. Ayala, University of California, Irvine, CA, and approved March 18, 2007 (received for review February 11, 2007) Laonastes aenigmamus is an enigmatic rodent first described in their classification as a diatomyid suggests that Laonastes is a 2005. Molecular and morphological data suggested that it is the living fossil and a ‘‘Lazarus taxon.’’ sole representative of a new mammalian family, the Laonastidae, The two research teams also disagreed on the taxonomic and a member of the Hystricognathi. However, the validity of this position of Laonastes. According to Jenkins et al. (2), Laonastes family is controversial because fossil-based phylogenetic analyses is either the most basal group of the hystricognaths (Fig. 2A)or suggest that Laonastes is a surviving member of the Diatomyidae, nested within the hystricognaths (Fig. 2B). According to Dawson a family considered to have been extinct for 11 million years. et al. (3), Laonastes and the other Diatomyidae are the sister According to these data, Laonastes and Diatomyidae are the sister clade of the family Ctenodactylidae (i.e., gundies), a family that clade of extant Ctenodactylidae (i.e., gundies) and do not belong does not belong to the Hystricognathi, but to which it is to the Hystricognathi. -
Palaeogene Fossil Record, Phylogeny, Dental Evolution and Historical Biogeography Laurent Marivaux, Myriam Boivin
Emergence of hystricognathous rodents: Palaeogene fossil record, phylogeny, dental evolution and historical biogeography Laurent Marivaux, Myriam Boivin To cite this version: Laurent Marivaux, Myriam Boivin. Emergence of hystricognathous rodents: Palaeogene fossil record, phylogeny, dental evolution and historical biogeography. Zoological Journal of the Linnean Society, Linnean Society of London, 2019, 187 (3), pp.929-964. 10.1093/zoolinnean/zlz048. hal-02263901 HAL Id: hal-02263901 https://hal.umontpellier.fr/hal-02263901 Submitted on 1 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Zoological Journal of the Linnean Society Emergence of hystricognathous rodents: Palaeogene fossil record, phylogeny, dental evolution, and historical biogeography Journal: Zoological Journal of the Linnean Society Manuscript ID ZOJ-12-2018-3565.R2 Manuscript Type:ForOriginal Review Article Only Africa < Geography, Asia < Geography, mandible < Anatomy, dental Keywords: evolution < Evolution, Eocene < Palaeontology, Oligocene < Palaeontology Although phylogenies imply Asia as the ancestral homeland of the Hystricognathi clade, curiously the oldest known fossil occurrences are not from Asia but from Africa and South America, where they appear by the late middle Eocene. Here we performed cladistic and Bayesian assessments of the dental evidence documenting early ctenohystricans, including several Asian “ctenodactyloids”, all Palaeogene Asian and African hystricognaths, and two early South American hystricognaths. -
Rodent-Borne Bartonella Infection Varies According to Host Species Within and Among Cities
EcoHealth 14, 771–782, 2017 DOI: 10.1007/s10393-017-1291-4 Ó 2017 EcoHealth Alliance Original Contribution Rodent-Borne Bartonella Infection Varies According to Host Species Within and Among Cities Anna C. Peterson,1 Bruno M. Ghersi,1 Fernando Alda,2 Cadhla Firth,3 Matthew J. Frye,4 Ying Bai,5 Lynn M. Osikowicz,5 Claudia Riegel,6 W. Ian Lipkin,7 Michael Y. Kosoy,5 and Michael J. Blum1,8 1Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, LA 2Museum of Natural Science, Louisiana State University, Baton Rouge, LA 3School of BioSciences, The University of Melbourne, Parkville, VIC, Australia 4New York State IPM Program, Cornell University, Geneva, NY 5Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO 6City of New Orleans Mosquito, Termite and Rodent Control Board, New Orleans, LA 7Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, NY 8Bywater Institute, Tulane University, New Orleans, LA Abstract: It is becoming increasingly likely that rodents will drive future disease epidemics with the continued expansion of cities worldwide. Though transmission risk is a growing concern, relatively little is known about pathogens carried by urban rats. Here, we assess whether the diversity and prevalence of Bartonella bacteria differ according to the (co)occurrence of rat hosts across New Orleans, LA (NO), where both Norway (Rattus norvegicus) and roof rats (Rattus rattus) are found, relative to New York City (NYC) which only harbors Norway rats. We detected human pathogenic Bartonella species in both NYC and New Orleans rodents. We found that Norway rats in New Orleans harbored a more diverse assemblage of Bartonella than Norway rats in NYC and that Norway rats harbored a more diverse and distinct assemblage of Bartonella compared to roof rats in New Orleans. -
A Comprehensive Phylogeny of the Gundis (Ctenodactylinae, Ctenodactylidae, Rodentia) Raquel López-Antoñanzas, Fabien Knoll
A comprehensive phylogeny of the gundis (Ctenodactylinae, Ctenodactylidae, Rodentia) Raquel López-Antoñanzas, Fabien Knoll To cite this version: Raquel López-Antoñanzas, Fabien Knoll. A comprehensive phylogeny of the gundis (Ctenodactylinae, Ctenodactylidae, Rodentia). Journal of Systematic Palaeontology, Taylor & Francis, 2011, 9 (3), pp.379 - 398. 10.1080/14772019.2010.529175. hal-01920843 HAL Id: hal-01920843 https://hal.archives-ouvertes.fr/hal-01920843 Submitted on 28 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A comprehensive phylogeny of the gundis (Ctenodactylinae, Ctenodactylidae, Rodentia) Raquel López-Antoñanzas & Fabien Knoll Departamento de Paleobiología, Museo Nacional de Ciencias Naturales-CSIC, c/ José Gutiérrez Abascal 2, Madrid 28006, Spain. E-mails (RLA): [email protected]; (FK): [email protected] Abstract The subfamily Ctenodactylinae is known from the Early Miocene up to the present. Today, this group comprises five species, which are restricted to north and east equatorial areas in Africa. However, by Miocene times, the ctenodactylines experienced their greatest diversification and widest distribution from Asia, their land of origin, to Africa where they entered during the Middle Miocene at the latest. So far 24 species can be referred to this group: Ctenodactylus gundi, C. -
Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2009 Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Recommended Citation Norris, Ryan, "Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils" (2009). Graduate College Dissertations and Theses. 164. https://scholarworks.uvm.edu/graddis/164 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. PHYLOGENETIC RELATIONSHIPS AND DIVERGENCE TIMES IN RODENTS BASED ON BOTH GENES AND FOSSILS A Dissertation Presented by Ryan W. Norris to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology February, 2009 Accepted by the Faculty of the Graduate College, The University of Vermont, in partial fulfillment of the requirements for the degree of Doctor of Philosophy, specializing in Biology. Dissertation ~xaminationCommittee: w %amB( Advisor 6.William ~il~atrickph.~. Duane A. Schlitter, Ph.D. Chairperson Vice President for Research and Dean of Graduate Studies Date: October 24, 2008 Abstract Molecular and paleontological approaches have produced extremely different estimates for divergence times among orders of placental mammals and within rodents with molecular studies suggesting a much older date than fossils. We evaluated the conflict between the fossil record and molecular data and find a significant correlation between dates estimated by fossils and relative branch lengths, suggesting that molecular data agree with the fossil record regarding divergence times in rodents. -
United States National Museum Bulletin 275
SMITHSONIAN INSTITUTIO N MUSEUM O F NATURAL HISTORY UNITED STATES NATIONAL MUSEUM BULLETIN 275 The Rodents of Libya Taxonomy, Ecology and Zoogeographical Relationships GARY L. RANCK Curator, Mammal Identification Service Division of Mammals, U.S. National Museum SMITHSONIAN INSTITUTION PRESS WASHINGTON, D.C. 1968 Publications of the United States National Museum The scientific publications of the United States National Museum include two series, Proceedings of the United States National Museum and United States National Museum Bulletin. In these series are published original articles and monographs dealing with the collections and work of the Museum and setting forth newly acquired facts in the field of anthropology, biology, geology, history, and technology. Copies of each publication are distributed .to libraries and scientific organizations and to specialists and others interested in the various subjects. The Proceedings, begun in 1878, are intended for the publication, in separate form, of shorter papers. These are gathered in volumes, octavo in size, with the publication date of each paper recorded in the table of contents of the volume. In the Bulletin series, the first of which was issued in 1875, appear longer, separate publications consisting of monographs (occasionally in several parts) and volumes in which are collected works on related subjects. Bulletins are either octavo or quarto in size, depending on the needs of the presentation. Since 1902, papers relating to the botanical collections of the Museum have been published in the Bulletin series under the heading Contributions from the United States National Herbarium. This work forms number 275 of the Bulletin series. Frank A. Taylor Director, United States National Museum U.S. -
Biogeography and Phylogenetic Position of a Sahara-Sahel Mountain Endemic, Felovia Vae (Ctenodactylidae)
Biogeography and phylogenetic position of a Sahara-Sahel mountain endemic, Felovia vae (Ctenodactylidae) Fábio Alberto Vieira Sousa Mestrado em Biodiversidade, Genética e Evolução Departamento de Biologia 2015 Orientador Zbyszek Boratyński, Post-doc, University of Jyväskylä Coorientador José Carlos Brito, Senior Scientist, Assoc. Researcher, FCUP/CIBIO Todas as correções determinadas pelo júri, e só essas, foram efetuadas. O Presidente do Júri, Porto, ______/______/_________ FCUP i Biogeography and phylogenetic position of a Sahara-Sahel mountain endemic, Felovia vae (Ctenodactylidae) Agradecimentos Em primeiro lugar gostaria de agradecer aos meus orientadores, Zbyszek Boratyński e José Carlos Brito, por todo o apoio prestado durante este trabalho. Um especial obrigado á Teresa Silva pela sua enorme paciência e ajuda no laboratório. Um obrigado ao Duarte Gonçalves e Paulo Pereira pela disponibilidade e prontidão em ajudar. Um obrigado a todos os membros dos Biodeserts, pelo ambiente descontraido do grupo, que ajuda bastante a troca de conhecimento e que muito contribuiu para a minha aprendizagem. Mais uma de muitas metas alcançadas ao lado das minha grandes amigas Filipa e Sara. Venham as próximas! Não poderia faltar o agradecimento á minha familia por todo o seu apoio incondicional, bem como á Carolina pelos seus preciosos conselhos nos bons e maus momentos deste percurso. FCUP ii Biogeography and phylogenetic position of a Sahara-Sahel mountain endemic, Felovia vae (Ctenodactylidae) Resumo A região do Saara-Sael é composta de um mosaico de habitats, montanhas, rios sazonais, áreas rochosas e extensas dunas de areia, que em conjunto definem a distribuição das espécies e a sua estrutura genética. Estas variáveis foram intensamente moldadas pelas flutuações climáticas durante o Pleistoceno, sendo normalmente possível recuperar tal efeito nos padrãos genéticos das espécies. -
Evolution of the Rodents
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2015 Diversity and evolution of femoral variation in Ctenohystrica Wilson, Laura A B ; Geiger, Madeleine Abstract: Despite possessing a rather generalised postcranial skeleton, rodents are on average capa- ble of a wide variety of locomotory behaviours, such as swimming, digging and climbing (Nowak, 1999). Particularly, rodents belonging to Ctenohystrica (sensu Huchon et al., 2002, and Fabre et al., 2012: Cten- odactylidae, Diatomyidae and Hystricognathi) display a diversity of locomotory styles and encompass a large range in body mass from approximately 50 g for the naked mole-rat Heterocephalus glaber to around 60 kg for the largest living rodent, the capybara Hydrochoerus hydrochaeris, consequently filling many different ecological niches (e.g. MacDonald, 2009; Wilson and Sánchez-Villagra, 2009, 2010). Moreover, this diversity is greatly expanded by the inclusion of giant extinct members such as Phoberomys, Araza- mys and Josephoartigasia that reached body masses at least seven or eight times that of the capybara (Sánchez-Villagra et al., 2003; Rinderknecht and Blanco, 2008; Rinderknecht and Bostelmann, 2011). The adaptive diversity that characterises the evolution of Ctenohystrica, and particularly the Caviomor- pha, a group that dispersed from Africa to colonise South America (Poux et al., 2006; Rowe et al., 2010) and evolved on that continent during a period of splendid isolation in the Cenozoic, has been the subject of numerous morpho-functional and evolutionary studies (e.g. Verzi et al., 2010; Wilson et al., 2010; Ál- varez et al., 2011a, b; Hautier et al., 2011, 2012; Cox et al., 2012; Geiger et al., 2013; Wilson, 2013). -
The Lens Protein Aa-Crystallin of the Blind Mole Rat, Spalax
Proc. Natl. Acad. Sci. USA Vol. 84, pp. 5320-5324, August 1987 Evolution The lens protein aA-crystallin of the blind mole rat, Spalax ehrenbergi: Evolutionary change and functional constraints (protein evolution/rodent phylogeny/substitution rate/retina/photoperiodicity) WIUAN HENDRIKS*, JACK LEUNISSEN*, EVIATAR NEVOt, HANS BLOEMENDAL0, AND WILFRIED W. DE JONG*t *Department of Biochemistry, University of Nijmegen, P.O. Box 9101, 6500 HB Nijmegen, The Netherlands; and tInstitute of Evolution, University of Haifa, Mount Carmel, Haifa 31999, Israel Communicated by Francisco J. Ayala, April 13, 1987 (received for review January 5, 1987) ABSTRACT The complete structure of the single-copy sequence homology, due to an ancient gene duplication (10), aA-crystallin gene of the blind mole rat (Spalax ehrenbergi) has and conspicuous sequence similarity with the small heat been determined in order to elucidate the evolutionary effects shock proteins indicates that the ancestral ca-crystallin gene of the loss of vision on a lens-specific protein and its gene. The originated from this protein family (13, 14). aA-Crystallin aA-crystallin gene appears to have all the necessary transcrip- DNA sequences are mainly available from rodents (14-17), tional and translational signal sequences to be expressed in the which makes the aA gene of the completely blind mole rat, rudimentary lens of the mole rat and gives rise to probably two Spalax ehrenbergi (18), an excellent target for a study of protein products by means of alternative splicing, as in rodents evolutionary constraints. The eyes of this rodent are highly with normal vision. Comparisons of the blind mole rat aA- degenerated (19), as an adaptation to a subterranean way of crystallin sequence with aA sequences from other rodents life probably more than 25 million years (myr) ago (20). -
ECM2011-Abstract Book.Pdf
Tuesday 19 July 09:00 - 16:00 EXCURSION to Parc des Félins of Melun (charged to participants upon reservation) 14:00 - 18:00 Registration of delegates (Atrium, Jussieu Campus) Opening session 18:00 - 20:00 (Amphitheatre F1, Jussieu Campus) 18:00 - 18:15 Welcome - Christiane Denys & Stéphane Aulagnier - Opening of the congress 18:15 - 19:00 François Moutou - “About mammals and diseases” 19:00 - 19:30 Sabrina Renaud - “Evo-Devo and morphometrics: an insight into the evolutionary processes” 19:30 - 20:00 François Bonhomme - “Of mice and men: what’s new since the Neolithics ?” 20:30 - 23:00 WELCOME RECEPTION in the Grande Galerie de l’Evolution Wednesday 20 July AMPHI ASTIER AMPHI HERPIN AMPHI 45A AMPHI 45B AMPHI 55A AMPHI 55B 1 - Subterranean 21 - Population 22 - General 19 - Ungulates 09:00 - 10:30 20 - Macroevolution 4A - Shrews mammals ecology session genomics 10:30 - 11:15 Coffee break / Visit of exhibition area (Atrium) 1 - Subterranean 21 - Population 22 - General 19 - Ungulates 11:15 - 12:35 20 - Macroevolution 4A - Shrews mammals ecology session genomics 12:35 - 14:00 Lunch (Administrative University Restaurant) / Visit of exhibition area (Atrium) 1 - Subterranean 15 - Postglacial 21 - Population 22 - General 19 - Ungulates 14:00 - 15:30 4A - Shrews mammals recolonisation ecology session genomics 15:30 - 16:30 Poster session (Atrium) 16:30 - 17:00 Coffee break / Visit of exhibition area (Atrium) 1 - Subterranean 15 - Postglacial 21 - Population 22 - General 19 - Ungulates 17:00 - 18:00 4A - Shrews mammals recolonisation ecology session -
Variance of Molecular Datings, Evolution of Rodents and the Phylogenetic Af®Nities Between Ctenodactylidae and Hystricognathi Dorothe¨ E Huchon*, Franc°Ois M
Variance of molecular datings, evolution of rodents and the phylogenetic af®nities between Ctenodactylidae and Hystricognathi Dorothe¨ e Huchon*, Franc°ois M. Catze£is and Emmanuel J. P. Douzery Laboratoire de Pale¨ ontologie, Pale¨ obiologie et Phyloge¨ nie-CC064, Institut des Sciences de l'Evolution UMR 5554/CNRS, Universite¨ Montpellier II, Place E. Bataillon, F-34095 Montpellier Cedex 05, France The von Willebrand factor (vWF) gene has been used to understand the origin and timing of Rodentia evolution in the context of placental phylogeny. vWF exon 28 sequences of 15 rodent families and eight non-rodent eutherian clades are analysed with two di¡erent molecular dating methods (uniform clock on a linearized tree; quartet dating). Three main conclusions are drawn from the study of this nuclear exon. First, Ctenodactylidae (gundis) and Hystricognathi (e.g. porcupines, guinea-pigs, chinchillas) robustly cluster together in a newly recognized clade, named `Ctenohystrica'. The Sciurognathi mono- phyly is subsequently rejected. Pedetidae (springhares) is an independent and early diverging rodent lineage, suggesting a convergent evolution of the multiserial enamel of rodent incisors. Second, molecular date estimates are here more in£uenced by accuracy and choice of the palaeontological temporal references used to calibrate the molecular clock than by either characters analysed (nucleo- tides versus amino acids) or species sampling. The caviomorph radiation at 31million years (Myr) and the pig^porpoise split at 63 Myr appear to be reciprocally compatible dates. Third, during the radiation of Rodentia, at least three lineages (Gliridae, Sciuroidea and Ctenohystrica) emerged close to the Cretaceous^Tertiary boundary, and their common ancestor separated from other placental orders in the Late Cretaceous.