water Review Organic Matter Decomposition and Ecosystem Metabolism as Tools to Assess the Functional Integrity of Streams and Rivers–A Systematic Review Verónica Ferreira 1,* , Arturo Elosegi 2 , Scott D. Tiegs 3 , Daniel von Schiller 4 and Roger Young 5 1 Marine and Environmental Sciences Centre–MARE, Department of Life Sciences, University of Coimbra, 3000–456 Coimbra, Portugal 2 Faculty of Science and Technology, University of the Basque Country (UPV/EHU), P.O. Box 644, 48080 Bilbao, Spain;
[email protected] 3 Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA;
[email protected] 4 Department of Evolutionary Biology, Ecology and Environmental Sciences, Institut de Recerca de l’Aigua (IdRA), University of Barcelona, Diagonal 643, 08028 Barcelona, Spain;
[email protected] 5 Cawthron Institute, Private Bag 2, Nelson 7042, New Zealand;
[email protected] * Correspondence:
[email protected] Received: 4 November 2020; Accepted: 8 December 2020; Published: 15 December 2020 Abstract: Streams and rivers provide important services to humans, and therefore, their ecological integrity should be a societal goal. Although ecological integrity encompasses structural and functional integrity, stream bioassessment rarely considers ecosystem functioning. Organic matter decomposition and ecosystem metabolism are prime candidate indicators of stream functional integrity, and here we review each of these functions, the methods used for their determination, and their strengths and limitations for bioassessment. We also provide a systematic review of studies that have addressed organic matter decomposition (88 studies) and ecosystem metabolism (50 studies) for stream bioassessment since the year 2000. Most studies were conducted in temperate regions. Bioassessment based on organic matter decomposition mostly used leaf litter in coarse-mesh bags, but fine-mesh bags were also common, and cotton strips and wood were frequent in New Zealand.