Loss of the Immune Checkpoint Cd85j/LILRB1 on Malignant Plasma Cells

Total Page:16

File Type:pdf, Size:1020Kb

Loss of the Immune Checkpoint Cd85j/LILRB1 on Malignant Plasma Cells Loss of the Immune Checkpoint CD85j/LILRB1 on Malignant Plasma Cells Contributes to Immune Escape in Multiple Myeloma This information is current as of September 28, 2021. Ester Lozano, Tania Díaz, Mari-Pau Mena, Guillermo Suñe, Xavier Calvo, Marcos Calderón, Lorena Pérez-Amill, Vanina Rodríguez, Patricia Pérez-Galán, Gaël Roué, M. Teresa Cibeira, Laura Rosiñol, Ignacio Isola, Luis-Gerardo Rodríguez-Lobato, Beatriz Martin-Antonio, Joan Bladé and Carlos Fernández de Larrea Downloaded from J Immunol published online 12 March 2018 http://www.jimmunol.org/content/early/2018/03/11/jimmun ol.1701622 http://www.jimmunol.org/ Supplementary http://www.jimmunol.org/content/suppl/2018/03/11/jimmunol.170162 Material 2.DCSupplemental Why The JI? Submit online. by guest on September 28, 2021 • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published March 12, 2018, doi:10.4049/jimmunol.1701622 The Journal of Immunology Loss of the Immune Checkpoint CD85j/LILRB1 on Malignant Plasma Cells Contributes to Immune Escape in Multiple Myeloma Ester Lozano,*,† Tania Dı´az,*,† Mari-Pau Mena,*,† Guillermo Sun˜e,*,‡ Xavier Calvo,* Marcos Caldero´n,*,† Lorena Pe´rez-Amill,*,‡ Vanina Rodrı´guez,† Patricia Pe´rez-Gala´n,† Gae¨l Roue´,†,x M. Teresa Cibeira,* Laura Rosin˜ol,* Ignacio Isola,* Luis-Gerardo Rodrı´guez- Lobato,* Beatriz Martin-Antonio,*,‡ Joan Blade´,*,‡ and Carlos Ferna´ndez de Larrea*,†,‡ Mechanisms of immune regulation may control proliferation of aberrant plasma cells (PCs) in patients with monoclonal gamm- opathy of undetermined significance (MGUS) preventing progression to active multiple myeloma (MM). We hypothesized that Downloaded from CD85j (LILRB1), an inhibitory immune checkpoint for B cell function, may play a role in MM pathogenesis. In this study, we report that patients with active MM had significantly lower levels of CD85j and its ligand S100A9. Decreased CD85j expression could also be detected in the premalignant condition MGUS, suggesting that loss of CD85j may be an early event promoting tumor immune escape. To gain insight into the molecular mechanisms underlying CD85j functions, we next enforced expression of CD85j in human myeloma cell lines by lentiviral transduction. Interestingly, gene expression profiling of CD85j-overexpressing cells revealed a set of downregulated genes with crucial functions in MM pathogenesis. Furthermore, in vitro functional assays http://www.jimmunol.org/ demonstrated that CD85j overexpression increased susceptibility to T cell– and NK-mediated killing. Consistently, ligation of CD85j decreased the number of PCs from individuals with MGUS but not from patients with MM. In conclusion, downregulation of inhibitory immune checkpoints on malignant PCs may provide a novel mechanism of immune escape associated with myeloma pathogenesis. The Journal of Immunology, 2018, 200: 000–000. ultiple myeloma (MM) is a clonal B cell malignancy marrow (BM) cells and PCs may show aberrant expression of characterized by neoplastic proliferation of a plasma receptors such as CD56 and CD117 (c-Kit). However, the annual M cell (PC) clone. Malignant PCs produce monoclonal rate of malignant transformation from MGUS to MM is 1% (6), Igs, which usually results in organ or tissue impairment (1, 2). MM indicating that mechanisms of control may prevent proliferation of by guest on September 28, 2021 accounts for approximately 13% of hematologic cancers and its aberrant PCs. The molecular mechanisms that maintain the frequency is likely to increase in the near future as the population MGUS state and the mechanisms that trigger progression from ages (1, 3). MM remains incurable although the median survival MGUS to MM are poorly understood. has recently increased due to the introduction of autologous stem- Immune cells must be tightly regulated to mount a specific cell transplantation and the availability of new agents such as immune response while avoiding autoimmunity. One mechanism of thalidomide, lenalidomide, and bortezomib (4, 5). MM is usually immune regulation is the presence of inhibitory immune check- preceded by the asymptomatic condition monoclonal gammopathy points on the surface of immune cells. Immune checkpoints may of undetermined significance (MGUS). In the asymptomatic contain ITIM, which can recruit phosphatases and deliver inhib- MGUS, the frequency of PCs may be up to 10% of the bone itory signals into the cell (7). Upregulation of ligands for inhibitory *Amyloidosis and Myeloma Unit, Department of Hematology, Hospital Clı´nic, Au- cytometry data analysis; V.R., P.P.-G., and G.R. performed gene expression analysis; gust Pi i Sunyer Biomedical Research Institute, University of Barcelona, 08036 B.M.-A., L.P.-A., and G.S. provided reagents and helped with functional NK cyto- Barcelona, Spain; †Division of Hematology and Oncology, August Pi i Sunyer Bio- toxicity assays; M.T.C., L.R., I.I., L.-G.R.-L., J.B., and C.F.d.L. provided patient medical Research Institute, 08036 Barcelona, Spain; ‡Josep Carreras Leukaemia samples and clinical data, designed research, and wrote the manuscript; all authors Research Institute, University of Barcelona, 08036 Barcelona, Spain; and xLabora- reviewed and approved the manuscript. tory of Experimental Hematology, Department of Hematology, Vall d’Hebron Insti- The microarray data presented in this article have been submitted to the Gene Ex- tute of Oncology, Vall d’Hebron University Hospital, 08035 Barcelona, Spain pression Omnibus database (http://www.ncbi.nlm.nih.gov/geo/) under accession ORCIDs: 0000-0002-6307-9807 (E.L.); 0000-0001-7934-9130 (X.C.); 0000- number GSE89793. 0003-0245-2257 (G.R.); 0000-0001-5694-0921 (L.-G.R.-L.); 0000-0003-0612- Address correspondence and reprint requests to Dr. Carlos Ferna´ndez de Larrea, 2693 (B.M.-A.). Amyloidosis and Myeloma Unit, Department of Hematology, Hospital Clı´nic de Received for publication November 27, 2017. Accepted for publication February 13, Barcelona, Institut d’Investigacions Biome`diques August Pi i Sunyer, Villarroel, 2018. 170, 08036 Barcelona, Spain. E-mail address: [email protected] This work was supported in part by Grants RD12/0036/0046 and PI16/00423 from The online version of this article contains supplemental material. Instituto de Salud Carlos III (Ministerio de Economı´a y Competitividad, Cofinan- Abbreviations used in this article: BM, bone marrow; CR, complete remission; ciado por Fondo Europeo de Desarrollo Regional, Union Europea, Una Manera de DAVID, Database for Annotation, Visualization, and Integrated Discovery; MGUS, Hacer Europa). This work was partially funded by a Generalitat de Catalunya grant monoclonal gammopathy of undetermined significance; MM, multiple myeloma; PC, (2014SGR-552), the CERCA Programme/Generalitat de Catalunya, and a Josep plasma cell; PD-1, programmed cell death protein 1; VGPR, very good partial Carreras Leukaemia Research Institute grant (CEL029). C.F.d.L. was the recipient response. of an Institut d’Investigacions Biome`diques August Pi i Sunyer starting grant (II040060). Copyright Ó 2018 by The American Association of Immunologists, Inc. 0022-1767/18/$35.00 E.L. performed experiments, analyzed data, and wrote the manuscript; T.D., M.-P.M., and M.C. performed experiments and analyzed results; X.C. performed flow www.jimmunol.org/cgi/doi/10.4049/jimmunol.1701622 2 LOSS OF CD85j IN MULTIPLE MYELOMA checkpoints on the surface of tumor cells is one escape mecha- BM mononuclear cells from patients with MGUS or MM were obtained + nism that cancer cells may develop to inhibit the host immune by density gradient centrifugation (Ficoll; Sigma-Aldrich). Fresh CD138 system (8, 9). Blockade of inhibitory immune checkpoints has PCs were isolated with anti-CD138 mAb-coated immunomagnetic beads (Miltenyi Biotec, San Diego, CA) using an AutoMacs cell sorter (Miltenyi been approved for the treatment of solid tumors and hematologic Biotec). RNA from PCs was isolated using Trizol reagent and total RNA malignancies (10–12). However, the roles of inhibitory immune was retrotranscribed using High Capacity cDNA Reverse Transcription kit checkpoints when immune cells become tumor cells remain un- (Thermo Fisher Scientific). TaqMan Universal PCR Master Mix and known. We hypothesized that inhibitory immune checkpoints on probes were from Thermo Fisher Scientific. Reactions were run on a 7900 Real-Time PCR System (Thermo Fisher Scientific). Values are represented the surface of PCs may play a role in maintaining immune control as the difference in cycle threshold values normalized to endogenous in the premalignant condition MGUS. Thus, loss of these mech- control b-glucuronidase for each sample as per the following formula: anisms may confer a selective advantage to the aberrant clone relative RNA expression = 22d cycle threshold.
Recommended publications
  • Anti-LYN Monoclonal Antibody, Clone 2285DU33.4.2.2 (DCABY-1218) This Product Is for Research Use Only and Is Not Intended for Diagnostic Use
    Anti-LYN monoclonal antibody, clone 2285DU33.4.2.2 (DCABY-1218) This product is for research use only and is not intended for diagnostic use. PRODUCT INFORMATION Antigen Description Non-receptor tyrosine-protein kinase that transmits signals from cell surface receptors and plays an important role in the regulation of innate and adaptive immune responses, hematopoiesis, responses to growth factors and cytokines, integrin signaling, but also responses to DNA damage and genotoxic agents. Functions primarily as negative regulator, but can also function as activator, depending on the context. Required for the initiation of the B-cell response, but also for its down- regulation and termination. Plays an important role in the regulation of B-cell differentiation, proliferation, survival and apoptosis, and is important for immune self-tolerance. Acts downstream of several immune receptors, including the B-cell receptor, CD79A, CD79B, CD5, CD19, CD22, FCER1, FCGR2, FCGR1A, TLR2 and TLR4. Plays a role in the inflammatory response to bacterial lipopolysaccharide. Mediates the responses to cytokines and growth factors in hematopoietic progenitors, platelets, erythrocytes, and in mature myeloid cells, such as dendritic cells, neutrophils and eosinophils. Acts downstream of EPOR, KIT, MPL, the chemokine receptor CXCR4, as well as the receptors for IL3, IL5 and CSF2. Plays an important role in integrin signaling. Regulates cell proliferation, survival, differentiation, migration, adhesion, degranulation, and cytokine release. Down- regulates signaling pathways by phosphorylation of immunoreceptor tyrosine-based inhibitory motifs (ITIM), that then serve as binding sites for phosphatases, such as PTPN6/SHP-1, PTPN11/SHP-2 and INPP5D/SHIP-1, that modulate signaling by dephosphorylation of kinases and their substrates.
    [Show full text]
  • Supplementary Table 1: Adhesion Genes Data Set
    Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like,
    [Show full text]
  • Characteristics of B Cell-Associated Gene Expression in Patients With
    MOLECULAR MEDICINE REPORTS 13: 4113-4121, 2016 Characteristics of B cell-associated gene expression in patients with coronary artery disease WENWEN YAN*, HAOMING SONG*, JINFA JIANG, WENJUN XU, ZHU GONG, QIANGLIN DUAN, CHUANGRONG LI, YUAN XIE and LEMIN WANG Department of Internal Medicine, Division of Cardiology, Tongji Hospital, Tongji University School of Medicine, Shanghai 200065, P.R. China Received May 19, 2015; Accepted February 12, 2016 DOI: 10.3892/mmr.2016.5029 Abstract. The current study aimed to identify differentially with the two other groups. Additionally the gene expression expressed B cell-associated genes in peripheral blood mono- levels of B cell regulatory genes were measured. In patients nuclear cells and observe the changes in B cell activation at with AMI, CR1, LILRB2, LILRB3 and VAV1 mRNA expres- different stages of coronary artery disease. Groups of patients sion levels were statistically increased, whereas, CS1 and IL4I1 with acute myocardial infarction (AMI) and stable angina (SA), mRNAs were significantly reduced compared with the SA and as well as healthy volunteers, were recruited into the study control groups. There was no statistically significant difference (n=20 per group). Whole human genome microarray analysis in B cell-associated gene expression levels between patients was performed to examine the expression of B cell-associated with SA and the control group. The present study identified the genes among these three groups. The mRNA expression levels downregulation of genes associated with BCRs, B2 cells and of 60 genes associated with B cell activity and regulation were B cell regulators in patients with AMI, indicating a weakened measured using reverse transcription-quantitative polymerase T cell-B cell interaction and reduced B2 cell activation during chain reaction.
    [Show full text]
  • Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
    Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int.
    [Show full text]
  • (Lilrs) on Human Neutrophils: Modulators of Infection and Immunity
    MINI REVIEW published: 13 May 2020 doi: 10.3389/fimmu.2020.00857 Leukocyte Immunoglobulin-Like Receptors (LILRs) on Human Neutrophils: Modulators of Infection and Immunity Alexander L. Lewis Marffy and Alex J. McCarthy* MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, United Kingdom Neutrophils have a crucial role in defense against microbes. Immune receptors allow neutrophils to sense their environment, with many receptors functioning to recognize signs of infection and to promote antimicrobial effector functions. However, the neutrophil Edited by: Nicole Thielens, response must be tightly regulated to prevent excessive inflammation and tissue damage, UMR5075 Institut de Biologie and regulation is achieved by expression of inhibitory receptors that can raise activation Structurale (IBS), France thresholds. The leukocyte immunoglobulin-like receptor (LILR) family contain activating Reviewed by: and inhibitory members that can up- or down-regulate immune cell activity. New ligands Debby Burshtyn, University of Alberta, Canada and functions for LILR continue to emerge. Understanding the role of LILR in neutrophil Tamás Laskay, biology is of general interest as they can activate and suppress antimicrobial responses University of Lübeck, Germany of neutrophils and because several human pathogens exploit these receptors for immune *Correspondence: Alex J. McCarthy evasion. This review focuses on the role of LILR in neutrophil biology. We focus on the [email protected] current knowledge of LILR expression
    [Show full text]
  • Nectin-2 Expression on Malignant Plasma Cells Is Associated with Better Response To
    Author Manuscript Published OnlineFirst on June 8, 2020; DOI: 10.1158/1078-0432.CCR-19-3673 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Nectin-2 expression on malignant plasma cells is associated with better response to TIGIT blockade in multiple myeloma Authors: Ester Lozano1,2*, Mari-Pau Mena1, Tania Díaz1, Beatriz Martin-Antonio1,3, Sheila León1, Luis-Gerardo Rodríguez-Lobato1, Aina Oliver-Caldés1, Mª Teresa Cibeira1, Joan Bladé1, Aleix Prat4, Laura Rosiñol1, and Carlos Fernández de Larrea1* Affiliations: 1Department of Hematology. Hospital Clínic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain 2Department of Cell Biology, Physiology and Immunology, Faculty of Biology, University of Barcelona, and Institute of Biomedicine of the University of Barcelona (IBUB), Barcelona, Spain 3Josep Carreras Leukaemia Research Institute, Barcelona, Spain 4Department of Medical Oncology, Hospital Clinic de Barcelona, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain *Corresponding authors: Carlos Fernández de Larrea, MD PhD, Department of Hematology, Hospital Clínic de Barcelona, Villarroel Street, 170, 08036 Barcelona, Spain. Phone:+34 932275428; email [email protected] Ester Lozano PhD, Department of Cell Biology, Physiology and Immunology, Faculty of Biology, University of Barcelona Diagonal Av. 643, 3rd floor 08028 Barcelona, Spain. Phone:+34 627 37 2188; email [email protected] Running Title: TIGIT blockade associated with nectin-2 in myeloma Keywords: TIGIT, PVR, nectin-2, immune checkpoints, myeloma, MGUS Metadata: Word count: 4547 Figures: 6 Supplementary Tables: 2 Supplementary Figures: 2 CONFLICT OF INTEREST DISCLOSURE STATEMENT The authors declare no potential conflicts of interest.
    [Show full text]
  • Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
    BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in
    [Show full text]
  • Beryllium-Induced Lung Disease Exhibits Expression Profiles Similar to Sarcoidosis
    ORIGINAL ARTICLE BERYLLIUM-INDUCED LUNG DISEASE Beryllium-induced lung disease exhibits expression profiles similar to sarcoidosis Li Li1,2, Lori J. Silveira1, Nabeel Hamzeh1,2, May Gillespie1, Peggy M. Mroz1, Annyce S. Mayer1,2,3, Tasha E. Fingerlin1 and Lisa A. Maier1,2,3 Affiliations: 1Dept of Medicine, National Jewish Health, Denver, CO, USA. 2Division of Pulmonary and Critical Care Sciences, Dept of Medicine, School of Medicine, Denver, CO, USA. 3Environmental Occupational Health Dept, School of Public Health, University of Colorado, Denver, CO, USA. Correspondence: Li Li, Division of Environmental and Occupational Health Sciences, Dept of Medicine, National Jewish Health, 1400 Jackson Street, Denver, CO 80206, USA. E-mail: [email protected] ABSTRACT A subset of beryllium-exposed workers develop beryllium sensitisation (BeS) which precedes chronic beryllium disease (CBD). We conducted an in-depth analysis of differentially expressed candidate genes in CBD. We performed Affymetrix GeneChip 1.0 ST array analysis on peripheral blood mononuclear cells (PBMCs) from 10 CBD, 10 BeS and 10 beryllium-exposed, nondiseased controls stimulated with BeSO4 or medium. The differentially expressed genes were validated by high-throughput real-time PCR in this group and in an additional group of cases and nonexposed controls. The functional roles of the top candidate genes in CBD were assessed using a pharmacological inhibitor. CBD gene expression data were compared with whole blood and lung tissue in sarcoidosis from the Gene Expression Omnibus. We confirmed almost 450 genes that were significantly differentially expressed between CBD and controls. The top enrichment of genes was for JAK ( Janus kinase)–STAT (signal transducer and activator of transcription) signalling.
    [Show full text]
  • Lncrna SNHG8 Is Identified As a Key Regulator of Acute Myocardial
    Zhuo et al. Lipids in Health and Disease (2019) 18:201 https://doi.org/10.1186/s12944-019-1142-0 RESEARCH Open Access LncRNA SNHG8 is identified as a key regulator of acute myocardial infarction by RNA-seq analysis Liu-An Zhuo, Yi-Tao Wen, Yong Wang, Zhi-Fang Liang, Gang Wu, Mei-Dan Nong and Liu Miao* Abstract Background: Long noncoding RNAs (lncRNAs) are involved in numerous physiological functions. However, their mechanisms in acute myocardial infarction (AMI) are not well understood. Methods: We performed an RNA-seq analysis to explore the molecular mechanism of AMI by constructing a lncRNA-miRNA-mRNA axis based on the ceRNA hypothesis. The target microRNA data were used to design a global AMI triple network. Thereafter, a functional enrichment analysis and clustering topological analyses were conducted by using the triple network. The expression of lncRNA SNHG8, SOCS3 and ICAM1 was measured by qRT-PCR. The prognostic values of lncRNA SNHG8, SOCS3 and ICAM1 were evaluated using a receiver operating characteristic (ROC) curve. Results: An AMI lncRNA-miRNA-mRNA network was constructed that included two mRNAs, one miRNA and one lncRNA. After RT-PCR validation of lncRNA SNHG8, SOCS3 and ICAM1 between the AMI and normal samples, only lncRNA SNHG8 had significant diagnostic value for further analysis. The ROC curve showed that SNHG8 presented an AUC of 0.850, while the AUC of SOCS3 was 0.633 and that of ICAM1 was 0.594. After a pairwise comparison, we found that SNHG8 was statistically significant (P SNHG8-ICAM1 = 0.002; P SNHG8-SOCS3 = 0.031).
    [Show full text]
  • Human CD Marker Chart Reviewed by HLDA1 Bdbiosciences.Com/Cdmarkers
    BD Biosciences Human CD Marker Chart Reviewed by HLDA1 bdbiosciences.com/cdmarkers 23-12399-01 CD Alternative Name Ligands & Associated Molecules T Cell B Cell Dendritic Cell NK Cell Stem Cell/Precursor Macrophage/Monocyte Granulocyte Platelet Erythrocyte Endothelial Cell Epithelial Cell CD Alternative Name Ligands & Associated Molecules T Cell B Cell Dendritic Cell NK Cell Stem Cell/Precursor Macrophage/Monocyte Granulocyte Platelet Erythrocyte Endothelial Cell Epithelial Cell CD Alternative Name Ligands & Associated Molecules T Cell B Cell Dendritic Cell NK Cell Stem Cell/Precursor Macrophage/Monocyte Granulocyte Platelet Erythrocyte Endothelial Cell Epithelial Cell CD1a R4, T6, Leu6, HTA1 b-2-Microglobulin, CD74 + + + – + – – – CD93 C1QR1,C1qRP, MXRA4, C1qR(P), Dj737e23.1, GR11 – – – – – + + – – + – CD220 Insulin receptor (INSR), IR Insulin, IGF-2 + + + + + + + + + Insulin-like growth factor 1 receptor (IGF1R), IGF-1R, type I IGF receptor (IGF-IR), CD1b R1, T6m Leu6 b-2-Microglobulin + + + – + – – – CD94 KLRD1, Kp43 HLA class I, NKG2-A, p39 + – + – – – – – – CD221 Insulin-like growth factor 1 (IGF-I), IGF-II, Insulin JTK13 + + + + + + + + + CD1c M241, R7, T6, Leu6, BDCA1 b-2-Microglobulin + + + – + – – – CD178, FASLG, APO-1, FAS, TNFRSF6, CD95L, APT1LG1, APT1, FAS1, FASTM, CD95 CD178 (Fas ligand) + + + + + – – IGF-II, TGF-b latency-associated peptide (LAP), Proliferin, Prorenin, Plasminogen, ALPS1A, TNFSF6, FASL Cation-independent mannose-6-phosphate receptor (M6P-R, CIM6PR, CIMPR, CI- CD1d R3G1, R3 b-2-Microglobulin, MHC II CD222 Leukemia
    [Show full text]
  • Figure S1. GO Analysis of Genes in Glioblastoma Cases That Showed Positive and Negative Correlations with TCIRG1 in the GSE16011 Cohort
    Figure S1. GO analysis of genes in glioblastoma cases that showed positive and negative correlations with TCIRG1 in the GSE16011 cohort. (A‑C) GO‑BP, GO‑CC and GO‑MF terms of genes that showed positive correlations with TCIRG1, respec‑ tively. (D‑F) GO‑BP, GO‑CC and GO‑MF terms of genes that showed negative correlations with TCIRG1. Red nodes represent gene counts, and black bars represent negative 1og10 P‑values. TCIRG1, T cell immune regulator 1; GO, Gene Ontology; BP, biological process; CC, cellular component; MF, molecular function. Table SI. Genes correlated with T cell immune regulator 1. Gene Name Pearson's r ARPC1B Actin‑related protein 2/3 complex subunit 1B 0.756 IL4R Interleukin 4 receptor 0.695 PLAUR Plasminogen activator, urokinase receptor 0.693 IFI30 IFI30, lysosomal thiol reductase 0.675 TNFAIP3 TNF α‑induced protein 3 0.675 RBM47 RNA binding motif protein 47 0.666 TYMP Thymidine phosphorylase 0.665 CEBPB CCAAT/enhancer binding protein β 0.663 MVP Major vault protein 0.660 BCL3 B‑cell CLL/lymphoma 3 0.657 LILRB3 Leukocyte immunoglobulin‑like receptor B3 0.656 ELF4 E74 like ETS transcription factor 4 0.652 ITGA5 Integrin subunit α 5 0.651 SLAMF8 SLAM family member 8 0.647 PTPN6 Protein tyrosine phosphatase, non‑receptor type 6 0.641 RAB27A RAB27A, member RAS oncogene family 0.64 S100A11 S100 calcium binding protein A11 0.639 CAST Calpastatin 0.638 EHBP1L1 EH domain‑binding protein 1‑like 1 0.638 LILRB2 Leukocyte immunoglobulin‑like receptor B2 0.629 ALDH3B1 Aldehyde dehydrogenase 3 family member B1 0.626 GNA15 G protein
    [Show full text]
  • Lyn Mouse Sirna Oligo Duplex (Locus ID 17096) Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for SR413591 Lyn Mouse siRNA Oligo Duplex (Locus ID 17096) Product data: Product Type: siRNA Oligo Duplexes Purity: HPLC purified Quality Control: Tested by ESI-MS Sequences: Available with shipment Stability: One year from date of shipment when stored at -20°C. # of transfections: Approximately 330 transfections/2nmol in 24-well plate under optimized conditions (final conc. 10 nM). Note: Single siRNA duplex (10nmol) can be ordered. RefSeq: NM_001111096, NM_010747 Synonyms: AA407514; Hck-2; p53Lyn; p56Lyn Components: Lyn (Mouse) - 3 unique 27mer siRNA duplexes - 2 nmol each (Locus ID 17096) Included - SR30004, Trilencer-27 Universal Scrambled Negative Control siRNA Duplex - 2 nmol Included - SR30005, RNAse free siRNA Duplex Resuspension Buffer - 2 ml This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 Lyn Mouse siRNA Oligo Duplex (Locus ID 17096) – SR413591 Summary: Non-receptor tyrosine-protein kinase that transmits signals from cell surface receptors and plays an important role in the regulation of innate and adaptive immune responses, hematopoiesis, responses to growth factors and cytokines, integrin signaling, but also responses to DNA damage and genotoxic agents. Functions primarily as negative regulator, but can also function as activator, depending on the context. Required for the initiation of the B-cell response, but also for its down-regulation and termination.
    [Show full text]