Article (PDF, 1170
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Smithsonian Miscellaneous Collections
SMITHSONIAN MISCELLANEOUS COLLECTIONS VOLUME 53, NUMBER 6 CAMBRIAN GEOLOGY AND PALEONTOLOGY No. 6.-0LENELLUS AND OTHER GENERA OF THE MESONACID/E With Twenty-Two Plates CHARLES D. WALCOTT (Publication 1934) CITY OF WASHINGTON PUBLISHED BY THE SMITHSONIAN INSTITUTION AUGUST 12, 1910 Zl^i £orb (gaitimovt (pnee BALTIMORE, MD., U. S. A. CAMBRIAN GEOLOGY AND PALEONTOLOGY No. 6.—OLENELLUS AND OTHER GENERA OF THE MESONACID^ By CHARLES D. WALCOTT (With Twenty-Two Plates) CONTENTS PAGE Introduction 233 Future work 234 Acknowledgments 234 Order Opisthoparia Beecher 235 Family Mesonacidas Walcott 236 Observations—Development 236 Cephalon 236 Eye 239 Facial sutures 242 Anterior glabellar lobe 242 Hypostoma 243 Thorax 244 Nevadia stage 244 Mesonacis stage 244 Elliptocephala stage 244 Holmia stage 244 Piedeumias stage 245 Olenellus stage 245 Peachella 245 Olenelloides ; 245 Pygidium 245 Delimitation of genera 246 Nevadia 246 Mesonacis 246 Elliptocephala 247 Callavia 247 Holmia 247 Wanneria 248 P.'edeumias 248 Olenellus 248 Peachella 248 Olenelloides 248 Development of Mesonacidas 249 Mesonacidas and Paradoxinas 250 Stratigraphic position of the genera and species 250 Abrupt appearance of the Mesonacidse 252 Geographic distribution 252 Transition from the Mesonacidse to the Paradoxinse 253 Smithsonian Miscellaneous Collections, Vol. 53, No. 6 232 SMITHSONIAN MISCELLANEOUS COLLECTIONS VOL. 53 Description of genera and species 256 Nevadia, new genus 256 weeksi, new species 257 Mcsonacis Walcott 261 niickwitzi (Schmidt) 262 torelli (Moberg) 264 vermontana -
El Paleozoico Inferior De Sonora, México: 120 Años De Investigación Paleontológica
El Paleozoico inferior de Sonora, México 1 Paleontología Mexicana Volumen 9, núm. 1, 2020, p. 1 – 15 El Paleozoico inferior de Sonora, México: 120 años de investigación paleontológica Cuen-Romero, Francisco Javiera,*; Reyes-Montoya, Dulce Raquelb; Noriega-Ruiz, Héctor Arturob a Departamento de Geología, Universidad de Sonora, Blvd. Luis Encinas y Rosales, CP. 83000, Hermosillo, Sonora, México. b Departamento de Investigaciones Científicas y Tecnológicas, Universidad de Sonora, Luis Donaldo Colosio s/n, entre Sahuaripa y Reforma, Col Centro, CP. 83000, Hermosillo, Sonora, México. * [email protected] Resumen Los estudios del Paleozoico inferior de México se inician en 1900 por Edwin Theodore Dumble (1852–1927), quien identificó estratos del Ordovícico por primera vez en Sonora. Actualmente, transcurridos ~120 años de estos primeros estudios en el país, se cuenta con una amplia bibliografía sobre estratigrafía y paleontología. En el presente trabajo se elabora una recapitulación de los prin- cipales trabajos del Cámbrico, Ordovícico y Silúrico de Sonora. El Cámbrico se encuentra distribuido de manera uniforme en la parte central y norte del estado. El Ordovícico se localiza en un cinturón principalmente hacia la parte central y sur del estado, y el Silúrico aflora en dos localidades de manera aislada. La biota del Paleozoico inferior de México está constituida por cianobacterias, poríferos, arqueociatos, braquiópodos, moluscos, artrópodos y equinodermos como formas predominantes. Palabras clave: Cámbrico, México, Ordovícico, Paleozoico, Silúrico, Sonora. Abstract The studies on the lower Paleozoic rocks of Mexico began in 1900 by Edwin Theodore Dumble (1852–1927), who first identified Ordovician in Sonora. Currently, after ~ 120 years of these first studies in the country, there is a dense stratigraphic and paleontological bibliography. -
Arthropod Pattern Theory and Cambrian Trilobites
Bijdragen tot de Dierkunde, 64 (4) 193-213 (1995) SPB Academie Publishing bv, The Hague Arthropod pattern theory and Cambrian trilobites Frederick A. Sundberg Research Associate, Invertebrate Paleontology Section, Los Angeles County Museum of Natural History, 900 Exposition Boulevard, Los Angeles, California 90007, USA Keywords: Arthropod pattern theory, Cambrian, trilobites, segment distributions 4 Abstract ou 6). La limite thorax/pygidium se trouve généralementau niveau du node 2 (duplomères 11—13) et du node 3 (duplomères les les 18—20) pour Corynexochides et respectivement pour Pty- An analysis of duplomere (= segment) distribution within the chopariides.Cette limite se trouve dans le champ 4 (duplomères cephalon,thorax, and pygidium of Cambrian trilobites was un- 21—n) dans le cas des Olenellides et des Redlichiides. L’extrémité dertaken to determine if the Arthropod Pattern Theory (APT) du corps se trouve généralementau niveau du node 3 chez les proposed by Schram & Emerson (1991) applies to Cambrian Corynexochides, et au niveau du champ 4 chez les Olenellides, trilobites. The boundary of the cephalon/thorax occurs within les Redlichiides et les Ptychopariides. D’autre part, les épines 1 4 the predicted duplomerenode (duplomeres or 6). The bound- macropleurales, qui pourraient indiquer l’emplacement des ary between the thorax and pygidium generally occurs within gonopores ou de l’anus, sont généralementsituées au niveau des node 2 (duplomeres 11—13) and node 3 (duplomeres 18—20) for duplomères pronostiqués. La limite prothorax/opisthothorax corynexochids and ptychopariids, respectively. This boundary des Olenellides est située dans le node 3 ou près de celui-ci. Ces occurs within field 4 (duplomeres21—n) for olenellids and red- résultats indiquent que nombre et distribution des duplomères lichiids. -
Arthropod Pattern Theory and Cambrian Trilobites
Bijdragen tot de Dierkunde, 64 (4) 193-213 (1995) SPB Academie Publishing bv, The Hague Arthropod pattern theory and Cambrian trilobites Frederick A. Sundberg Research Associate, Invertebrate Paleontology Section, Los Angeles County Museum of Natural History, 900 Exposition Boulevard, Los Angeles, California 90007, USA Keywords: Arthropod pattern theory, Cambrian, trilobites, segment distributions 4 Abstract ou 6). La limite thorax/pygidium se trouve généralementau niveau du node 2 (duplomères 11—13) et du node 3 (duplomères les les 18—20) pour Corynexochides et respectivement pour Pty- An analysis of duplomere (= segment) distribution within the chopariides.Cette limite se trouve dans le champ 4 (duplomères cephalon,thorax, and pygidium of Cambrian trilobites was un- 21—n) dans le cas des Olenellides et des Redlichiides. L’extrémité dertaken to determine if the Arthropod Pattern Theory (APT) du corps se trouve généralementau niveau du node 3 chez les proposed by Schram & Emerson (1991) applies to Cambrian Corynexochides, et au niveau du champ 4 chez les Olenellides, trilobites. The boundary of the cephalon/thorax occurs within les Redlichiides et les Ptychopariides. D’autre part, les épines 1 4 the predicted duplomerenode (duplomeres or 6). The bound- macropleurales, qui pourraient indiquer l’emplacement des ary between the thorax and pygidium generally occurs within gonopores ou de l’anus, sont généralementsituées au niveau des node 2 (duplomeres 11—13) and node 3 (duplomeres 18—20) for duplomères pronostiqués. La limite prothorax/opisthothorax corynexochids and ptychopariids, respectively. This boundary des Olenellides est située dans le node 3 ou près de celui-ci. Ces occurs within field 4 (duplomeres21—n) for olenellids and red- résultats indiquent que nombre et distribution des duplomères lichiids. -
Smithsonian Miscellaneous Collections
SMITHSONIAN MISCELLANEOUS COLLECTIONS VOLUME 116, NUMBER 5 Cfjarle* £. anb Jfflarp "^Xaux flKHalcott 3Resiearcf) Jf tmb MIDDLE CAMBRIAN STRATIGRAPHY AND FAUNAS OF THE CANADIAN ROCKY MOUNTAINS (With 34 Plates) BY FRANCO RASETTI The Johns Hopkins University Baltimore, Maryland SEP Iff 1951 (Publication 4046) CITY OF WASHINGTON PUBLISHED BY THE SMITHSONIAN INSTITUTION SEPTEMBER 18, 1951 SMITHSONIAN MISCELLANEOUS COLLECTIONS VOLUME 116, NUMBER 5 Cfjarie* B. anb Jfflarp "^Taux OTalcott &egearcf) Jf unb MIDDLE CAMBRIAN STRATIGRAPHY AND FAUNAS OF THE CANADIAN ROCKY MOUNTAINS (With 34 Plates) BY FRANCO RASETTI The Johns Hopkins University Baltimore, Maryland (Publication 4046) CITY OF WASHINGTON PUBLISHED BY THE SMITHSONIAN INSTITUTION SEPTEMBER 18, 1951 BALTIMORE, MD., U. 8. A. CONTENTS PART I. STRATIGRAPHY Page Introduction i The problem I Acknowledgments 2 Summary of previous work 3 Method of work 7 Description of localities and sections 9 Terminology 9 Bow Lake 11 Hector Creek 13 Slate Mountains 14 Mount Niblock 15 Mount Whyte—Plain of Six Glaciers 17 Ross Lake 20 Mount Bosworth 21 Mount Victoria 22 Cathedral Mountain 23 Popes Peak 24 Eiffel Peak 25 Mount Temple 26 Pinnacle Mountain 28 Mount Schaffer 29 Mount Odaray 31 Park Mountain 33 Mount Field : Kicking Horse Aline 35 Mount Field : Burgess Quarry 37 Mount Stephen 39 General description 39 Monarch Creek IS Monarch Mine 46 North Gully and Fossil Gully 47 Cambrian formations : Lower Cambrian S3 St. Piran sandstone 53 Copper boundary of formation ?3 Peyto limestone member 55 Cambrian formations : Middle Cambrian 56 Mount Whyte formation 56 Type section 56 Lithology and thickness 5& Mount Whyte-Cathedral contact 62 Lake Agnes shale lentil 62 Yoho shale lentil "3 iii iv SMITHSONIAN MISCELLANEOUS COLLECTIONS VOL. -
Early Cambrian Trilobite Faunas and Correlations, Labrador Group, Southern Labrador—Western Newfoundland
EARLY CAMBRIAN TRILOBITE FAUNAS AND CORRELATIONS, LABRADOR GROUP, SOUTHERN LABRADOR—WESTERN NEWFOUNDLAND Douglas Boyce1, Ian Knight1, Christian Skovsted2 and Uwe Balthasar3 1 - GSNL; 2 - Swedish Museum of Natural History; 3 – University of Plymouth, England. Paleontological, lithological and mapping studies of mixed siliciclastic‒carbonate rocks of the Labrador Group have been ongoing, since 1976, by the GSNL. Recent systematic litho- and bio-stratigraphic studies with Drs. Skovsted and Balthasar focus on trilobite and small shelly fossils (SSF), mostly in the Forteau Formation. At least 34 co-eval sections have been measured, and 434 fossiliferous samples have been collected; publication of trilobite and SSF systematics is in preparation. Dyeran to Topazan biostratigraphy, southern Labrador and western Newfoundland. Early Cambrian and early Middle Cambrian global and Laurentian series and stages (Hollingsworth, 2011). Distribution of the Trilobite Faunas Early Cambrian trilobite faunas occur throughout the Forteau Formation and in the lowest strata of the overlying Hawke Bay Formation. They divide into two broad faunas – Olenelloidea, mostly occur in deep-water shale and mudrocks, and Corynexochida, are hosted in shallow-water limestone, including archeocyathid reefs. The Devils Cove member, basal Forteau Formation - a regionally widespread pink Bonnia sp. nov. Boyce: latex replica of limestone - hosts Calodiscus lobatus (Hall, 1847), Elliptocephala logani (Walcott, partial, highly ornamented, spinose 1910), and Labradoria misera (Billings, 1861a). Calodiscus lobatus and E. logani range cranidium, Route 432, Great Northern Zacanthopsis sp. A Boyce: latex replica of Peninsula (GNP); it also occurs in the Deer high in the formation regionally, but L. misera is restricted to the lower 20 m of the partial cranidium, Mackenzie Mill member, Arm limestone, Mackenzie Mill member, formation in Labrador (includes archeocyathid reefs). -
Phylogenetic Position of the Copepod-Infesting Parasite Syndinium Turbo (Dinoflagellata, Syndinea)
ARTICLE IN PRESS Protist, Vol. 156, 413—423, November 2005 http://www.elsevier.de/protis Published online date 4 November 2005 ORIGINAL PAPER Phylogenetic Position of the Copepod-Infesting Parasite Syndinium turbo (Dinoflagellata, Syndinea) Alf Skovgaard1,2, Ramon Massana, Vanessa Balague´ , and Enric Saiz Departament de Biologia Marina i Oceanografia, Institut de Cie` ncies del Mar, CSIC, Passeig Marı´tim de la Barceloneta 37-49, 08003 Barcelona, Catalonia, Spain Submitted May 31, 2005; Accepted August 14, 2005 Monitoring Editor: Robert A. Andersen Sequences were determined for the nuclear-encoded small subunit (SSU) rRNA and 5.8S rRNA genes as well as the internal transcribed spacers ITS1 and ITS2 of the parasitic dinoflagellate genus Syndinium from two different marine copepod hosts. Syndinium developed a multicellular plasmodium inside its host and at maturity free-swimming zoospores were released. Syndinium plasmodia in the copepod Paracalanus parvus produced zoospores of three different morphological types. However, full SSU rDNA sequences for the three morphotypes were 100% identical and also their ITS1—ITS2 sequences were identical except for four base pairs. It was concluded that the three morphotypes belong to a single species that was identified as Syndinium turbo, the type species of the dinoflagellate subdivision Syndinea. The SSU rDNA sequence of another Syndinium species infecting Corycaeus sp. was similar to Syndinium turbo except for three base pairs and the ITS1—ITS2 sequences of the two species differed at 34—35 positions. Phylogenetic analyses placed Syndinium as a sister taxon to the blue crab parasite Hematodinium sp. and both parasites were affiliated with the so-called marine alveolate Group II. -
DINOFLAGELLATA, ALVEOLATA) Gómez, F
CICIMAR Oceánides 27(1): 65-140 (2012) A CHECKLIST AND CLASSIFICATION OF LIVING DINOFLAGELLATES (DINOFLAGELLATA, ALVEOLATA) Gómez, F. Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, PO Box 22085, 46071 Valencia, España. email: [email protected] ABSTRACT. A checklist and classification of the extant dinoflagellates are given. Dinokaryotic dinoflagellates (including Noctilucales) comprised 2,294 species belonging to 238 genera. Dinoflagellatessensu lato (Ellobiopsea, Oxyrrhea, Syndinea and Dinokaryota) comprised 2,377 species belonging to 259 genera. The nomenclature of several taxa has been corrected according to the International Code of Botanical Nomenclature. When gene sequences were available, the species were classified following the Small and Large SubUnit rDNA (SSU and LSU rDNA) phylogenies. No taxonomical innovations are proposed herein. However, the checklist revealed that taxa distantly related to the type species of their genera would need to be placed in a new or another known genus. At present, the most extended molecular markers are unable to elucidate the interrelations between the classical orders, and the available sequences of other markers are still insufficient. The classification of the dinoflagellates remains unresolved, especially at the order level. Keywords: alveolates, biodiversity inventory, Dinophyceae, Dinophyta, parasitic phytoplankton, systematics. Inventario y classificacion de especies de dinoflagelados actuales (Dinoflagellata, Alveolata) RESUMEN. Se presentan un inventario y una clasificación de las especies de dinoflagelados actuales. Los dinoflagelados dinocariontes (incluyendo los Noctilucales) están formados por 2,294 especies pertenecientes a 238 géneros. Los dinoflagelados en un sentido amplio (Ellobiopsea, Oxyrrhea, Syndinea y Dinokaryota) comprenden un total de 2,377 especies distribuidas en 259 géneros. La nomenclatura de algunos taxones se ha corregido siguiendo las reglas del Código Internacional de Nomenclatura Botánica. -
Species of the Parasitic Genus Duboscquella Are Members of the Enigmatic Marine Alveolate Group I
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/6275809 Species of the Parasitic Genus Duboscquella are Members of the Enigmatic Marine Alveolate Group I Article in Protist · August 2007 DOI: 10.1016/j.protis.2007.03.005 · Source: PubMed CITATIONS READS 92 205 3 authors, including: Susumu Ohtsuka Hiroshima University 251 PUBLICATIONS 2,949 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Tropical foodwebs analysis View project Zooplankton Diversity View project All content following this page was uploaded by Susumu Ohtsuka on 29 December 2017. The user has requested enhancement of the downloaded file. ARTICLE IN PRESS Protist, Vol. 158, 337—347, July 2007 http://www.elsevier.de/protis Published online date 13 June 2007 ORIGINAL PAPER Species of the Parasitic Genus Duboscquella are Members of the Enigmatic Marine Alveolate Group I Ai Haradaa, Susumu Ohtsukab, and Takeo Horiguchic,1 aDivision of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan bTakehara Marine Science Station, Setouchi Field Science Center, Graduate School of Biosphere Science, Hiroshima University, 5-8-1 Minato-machi, Takehara, Hiroshima 725-0024, Japan cDepartment of Natural History Sciences, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan Submitted December 12, 2006; Accepted March 11, 2007 Monitoring Editor: Marina Montresor Small subunit ribosomal RNA gene sequences of Duboscquella spp. infecting the tintinnid ciliate, Favella ehrenbergii, were determined. Two parasites were sampled from different localities. They are morphologically similar to each other and both resemble D. aspida. Nevertheless, two distinct sequences (7.6% divergence) were obtained from them.