The Influence of Caches on the Performance of Sorting

Total Page:16

File Type:pdf, Size:1020Kb

The Influence of Caches on the Performance of Sorting The Influence of Caches on the Performance of Sorting Anthony LaMarca* & Richard E. Ladner Department of Computer Science and Engineering University of Washington Seattle, WA 98195 lamarcaQparc.xerox.com [email protected] Abstract quicksort [12], and radix sort*. Heapsort, mergesort, We investigate the effect that caches have on the per- and quicksort are all comparison based sorting algo- formance of sorting algorithms both experimentally and rithms while radix sort is not. analytically. To address the performance problems that For each of the four sorting algorithms we choose an high cache miss penalties introduce we restructure heap- implementation variant with potential for good overall sort, mergesort and quicksort in order to improve their performance and then heavily optimize this variant us- cache locality. For all three algorithms the improvement ing traditional techniques to minimize the number of in cache performance leads to a reduction in total ex- instructions executed. These heavily optimized algo- ecution time. We also investigate the performance of rithms form the baseline for comparison. For each of radix sort. Despite the extremely low instruction count the comparison sort baseline algorithms we develop and incurred by this linear sorting algorithm, its relatively apply memory optimizations in order to improve cache poor cache performance results in worse overall perfor- performance and, hopefully, overall performance. For mance than the efficient comparison based sorting algo- radix sort we optimize cache performance by varying rithms. the radix. In the process we develop some simple an- alytic techniques which enable us to predict the mem- 1 Introduction. ory performance of these algorithms in terms of cache misses. Since the introduction of caches, main memory has con- For comparison purposes we focus on sorting an ar- tinued to grow slower relative to processor cycle times. ray (4,000 to 4,096,OOO keys) of 64 bit integers chosen The time to service a cache miss to memory has grown uniformly at random. Our study uses trace-driven sim- from 6 cycles for the Vax 11/780 to 120 for the Al- ulations and actual executions to measure the impact phaServer 8400 13, 73. Cache miss penalties have grown that our memory optimizations have on performance. to the point where good overall performance cannot be We concentrate on three performance measures: in- achieved without good cache performance. As a conse- struction count, cache misses, and overall performance quence of this change in computer architectures, algo- (time) on machines with modern memory systems. Our rithms which have been designed to minimize instruc- results can be summarized as follows: tion count may not achieve the performance of algo- 1. For the three comparison based sorting algorithms, rithms which take into account both instruction count memory optimizations improve both cache and and cache performance. overall performance. The improvements in overall One of the most common tasks computers perform performance for heapsort and mergesort are signif- is sorting a set of unordered keys. Sorting is a funda- icant, while the improvement for quicksort is mod- mental task and hundreds of sorting algorithms have est. Interestingly, memory optimizations to heap- been developed. In this paper we explore the potential sort also reduce its instruction count. For radix sort performance gains that cache-conscious design offers in the radix that minimizes cache misses also mini- understanding and improving the performance of four mizes instruction count. popular sorting algorithms: heapsort [25], mergesortl, -arca was supported by an AT&T fellowship. He is the 1930s. currently at Xerox PARC, 3333 Coyote Hill Road, Palo Alto CA 2Knuth [IS] traces the radix sorting method to the Hollerith 94304 sorting machine that was first used to assist the 1890 United lKnuth [15] traces mergesort back to card sorting machines of States census. 370 371 2. For large arrays, radix sort has the lowest instruc- locations. Direct-mapped caches have an associa- tion count, but because of its relatively poor cache tivity of one, and can load a particular block only performance, its overall performance is worse than in a single location. Fully associative caches are at the memory optimized versions of mergesort and the other extreme and can load blocks anywhere in quicksort. the cache. 3. Although our study was done on one machine, l Replacement policy, which indicates the policy of we demonstrate the robustness of the results by which block to remove from the cache when a new showing that comparable speedups due to improved block is loaded. For the direct-mapped cache the cache performance can be achieved on several other replacement policy is simply to remove the block machines. currently residing in the cache. 4. There are effective analytic approaches to predict- In most modern machines, more than one cache is ing the number of cache misses these sorting algo- placed between the processor and main memory. These rithms incur. hierarchies of caches are configured with the smallest, The main general lesson to be learned from this fastest cache next to the processor and the largest, study is that because cache miss penalties are large, slowest cache next to main memory. The largest miss and growing larger with each new generation of pro- penalty is typically incurred with the cache closest to cessor, selecting the fastest algorithm to solve a prob- main memory and this cache is usually direct-mapped. lem entails understanding cache performance. Improv- Consequently, our design and analysis techniques will ing an algorithm’s overall performance may require in- focus on improving the performance of direct-mapped creasing the number of instructions executed while, at caches. We will assume that the cache parameters, block the same time, reducing the number of cache misses. size and capacity, are known to the programmer. Consequently, cache;conscious design of algorithms is High cache hit ratios depend on a program’s stream required to achieve the best, performance. of memory references exhibiting locality. A program exhibits temporal locality if there is a good chance that 2 Caches. an accessed data item will be accessed again in the near future. A program exhibits spatial locality if there is In order to speed up memory accesses, small high speed good chance that subsequently accessed data items are memories called c&es are placed between the proces- located near each other in memory. Most programs sor and the main memory. Accessing the cache is typ- tend to exhibit both kinds of locality and typical hit ically much faster than accessing main memory. Un- ratios are greater than 90% [18]. Our design techniques fortunately, since caches are smaller than main memory will attempt to improve both the temporal and spatial they can hold only a subset of its contents. Memory locality of the sorting algorithms. accesses first consult the cache to see if it contains the desired data. If the data is found in the cache, the main 3 Design and Evaluatiqn Methodology. memory need not be consulted and the access is consid- ered to be a cache hit. If the data is not in the cache it Cache locality is a good thing. When spatial and tempo- is considered a miss, and the data must be loaded from ral locality can be improved at no cost it should always main memory. On a miss, the block containing the ac- be done. In this paper, however, we develop techniques cessed data is loaded into the cache in the hope that for improving locality even when it results in an increase it will be used again in the future. The hit ratio is a in the total number of executed instructions. This rep- measure of cache performance and is the total number resents a significant departure from traditional design of hits divided by the total number of accesses. and optimization methodology. We take this approach The major design parameters of caches are: in order to show how large an impact cache performance can have on overall performance. Interestingly, many of l Capacity, which is the total number of bytes that the cache can hold. the design techniques are not particularly new. Some have already been used in optimizing compilers, in al- l Block site, which is the number of bytes that are gorithms which use external storage devices, and in par- loaded from and written to memory at a time. allel algorithms. Similar techniques have also been used successfully in the development of the cache-efficient Al- l Associativity, which indicates the number of differ- phasort algorithm [19]. ent locations in the cache where a particular block As mentioned earlier we focus on three measures can be loaded. In an N-way set-associative cache, a of performance: instruction count, cache misses, and particular block can be loaded in N different cache overall performance in terms of execution time. All 372 of the dynamic instruction counts and cache simula- algorithm [25] for building a binary heap incurs fewer tion results were measured using Atom [23]. Atom is cache misses than Floyd’s method. In addition we have a toolkit developed by DEC for instrumenting program shown [17, 161 that two other optimizations reduce the executables on Alpha workstations. Dynamic instruc- number of cache misses incurred by the remove-min op- tion counts are obtained by inserting an increment to eration. The first optimization is to replace the tradi- an instruction counter after each instruction executed tional binary heap with a d-heap [14] where each non- by the algorithm. Cache performance is determined by leaf node has d children instead of two. The fanout d inserting calls after every load and store to maintain is chosen so that exactly d keys are the size of a cache the state of a simulated cache and to keep track of hit block.
Recommended publications
  • 17. Chapter 11
    11 EXTERNALSORTING Good order is the foundation of all things. —Edmund Burke Sorting a collection of records on some (search) key is a very useful operation. The key can be a single attribute or an ordered list of attributes, of course. Sorting is required in a variety of situations, including the following important ones: Users may want answers in some order; for example, by increasing age (Section 5.2). Sorting records is the first step in bulk loading a tree index (Section 9.8.2). Sorting is useful for eliminating duplicate copies in a collection of records (Chapter 12). A widely used algorithm for performing a very important relational algebra oper- ation, called join, requires a sorting step (Section 12.5.2). Although main memory sizes are increasing, as usage of database systems increases, increasingly larger datasets are becoming common as well. When the data to be sorted is too large to fit into available main memory, we need to use an external sorting algorithm. Such algorithms seek to minimize the cost of disk accesses. We introduce the idea of external sorting by considering a very simple algorithm in Section 11.1; using repeated passes over the data, even very large datasets can be sorted with a small amount of memory. This algorithm is generalized to develop a realistic external sorting algorithm in Section 11.2. Three important refinements are discussed. The first, discussed in Section 11.2.1, enables us to reduce the number of passes. The next two refinements, covered in Section 11.3, require us to consider a more detailed model of I/O costs than the number of page I/Os.
    [Show full text]
  • External Sorting Why Sort? Sorting a File in RAM 2-Way Sort of N Pages
    Why Sort? A classic problem in computer science! Data requested in sorted order – e.g., find students in increasing gpa order Sorting is the first step in bulk loading of B+ tree External Sorting index. Sorting is useful for eliminating duplicate copies in a collection of records (Why?) Chapter 13 Sort-merge join algorithm involves sorting. Problem: sort 100Gb of data with 1Gb of RAM. – why not virtual memory? Take a look at sortbenchmark.com Take a look at main memory sort algos at www.sorting-algorithms.com Database Management Systems, R. Ramakrishnan and J. Gehrke 1 Database Management Systems, R. Ramakrishnan and J. Gehrke 2 Sorting a file in RAM 2-Way Sort of N pages Requires Minimum of 3 Buffers Three steps: – Read the entire file from disk into RAM Pass 0: Read a page, sort it, write it. – Sort the records using a standard sorting procedure, such – only one buffer page is used as Shell sort, heap sort, bubble sort, … (100’s of algos) – How many I/O’s does it take? – Write the file back to disk Pass 1, 2, 3, …, etc.: How can we do the above when the data size is 100 – Minimum three buffer pages are needed! (Why?) or 1000 times that of available RAM size? – How many i/o’s are needed in each pass? (Why?) And keep I/O to a minimum! – How many passes are needed? (Why?) – Effective use of buffers INPUT 1 – Merge as a way of sorting – Overlap processing and I/O (e.g., heapsort) OUTPUT INPUT 2 Main memory buffers Disk Disk Database Management Systems, R.
    [Show full text]
  • Efficient External Sorting on Flash Memory Embedded Devices
    International Journal of Database Management Systems ( IJDMS ) Vol.5, No.1, February 2013 EFFICIENT EXTERNAL SORTING ON FLASH MEMORY EMBEDDED DEVICES Tyler Cossentine and Ramon Lawrence Department of Computer Science, University of British Columbia Okanagan Kelowna, BC, Canada [email protected] [email protected] ABSTRACT Many embedded system applications involve storing and querying large datasets. Existing research in this area has focused on adapting and applying conventional database algorithms to embedded devices. Algorithms designed for processing queries on embedded devices must be able to execute given the small amount of available memory and energy constraints. Most embedded devices use flash memory to store large amounts of data. Flash memory has unique performance characteristics that can be exploited to improve algorithm performance. In this paper, we describe the Flash MinSort external sorting algorithm that uses an index, generated at runtime, to take advantage of fast random reads in flash memory. This algorithm adapts to the amount of memory available and performs best in applications where sort keys are clustered. Experimental results show that Flash MinSort is two to ten times faster than previous approaches for small memory sizes where external merge sort is not executable. KEYWORDS sorting, sensor node, flash memory, query processing 1. INTRODUCTION Embedded systems are devices that perform a few simple functions. Most embedded systems, such as sensor networks, smart cards and certain hand-held devices, are computationally constrained. These devices typically have a low-power microprocessor, limited amount of memory, and flash-based data storage. In addition, some battery-powered devices, such as sensor networks, must be deployed for months at a time without being replaced.
    [Show full text]
  • External Sorting
    External sorting R & G – Chapter 13 Brian Cooper Yahoo! Research A little bit about Y! Yahoo! is the most visited website in the world Sorry Google 500 million unique visitors per month 74 percent of U.S. users use Y! (per month) 13 percent of U.S. users’ online time is on Y! Why sort? Why sort? Users usually want data sorted Sorting is first step in bulk-loading a B+ tree Sorting useful for eliminating duplicates Sort-merge join algorithm involves sorting Banana Apple Grapefruit Banana Apple Blueberry Orange Grapefruit Mango Kiwi Kiwi Mango Strawberry Orange Blueberry Strawberry So? Don’t we know how to sort? Quicksort Mergesort Heapsort Selection sort Insertion sort Radix sort Bubble sort Etc. Why don’t these work for databases? Key problem in database sorting 4 GB: $300 480 GB: $300 How to sort data that does not fit in memory? Example: merge sort Banana Banana Banana Grapefruit Grapefruit Banana Grapefruit Grapefruit Apple Apple Apple Apple Orange Orange Orange Orange Mango Kiwi Mango Mango Kiwi Strawberry Kiwi Kiwi Mango Blueberry Strawberry Blueberry Strawberry Blueberry Blueberry Strawberry Example: merge sort Banana Apple Apple Grapefruit Banana Banana Grapefruit Blueberry Apple Orange Grapefruit Orange Kiwi Mango Orange Kiwi Strawberry Mango Blueberry Kiwi Blueberry Mango Strawberry Strawberry Isn’t that good enough? Consider a file with N records Merge sort is O(N lg N) comparisons We want to minimize disk I/Os Don’t want to go to disk O(N lg N) times! Key insight: sort based on pages, not records Read
    [Show full text]
  • Algorithms and Data Structures for External Memory Algorithms and Data Structures 2:4 for External Memory Jeffrey Scott Vitter
    TCSv2n4.qxd 4/24/2008 11:56 AM Page 1 FnT TCS 2:4 Foundations and Trends® in Theoretical Computer Science Algorithms and Data Structures for External MemoryAlgorithms and Data Structures for Vitter Scott Jeffrey Algorithms and Data Structures 2:4 for External Memory Jeffrey Scott Vitter Data sets in large applications are often too massive to fit completely inside the computer's internal memory. The resulting input/output communication (or I/O) between fast internal memory and slower external memory (such as disks) can be a major performance bottleneck. Algorithms and Data Structures Algorithms and Data Structures for External Memory surveys the state of the art in the design and analysis of external memory (or EM) algorithms and data structures, where the goal is to exploit locality in order to reduce the I/O costs. A variety of EM paradigms are considered for for External Memory solving batched and online problems efficiently in external memory. Jeffrey Scott Vitter Algorithms and Data Structures for External Memory describes several useful paradigms for the design and implementation of efficient EM algorithms and data structures. The problem domains considered include sorting, permuting, FFT, scientific computing, computational geometry, graphs, databases, geographic information systems, and text and string processing. Algorithms and Data Structures for External Memory is an invaluable reference for anybody interested in, or conducting research in the design, analysis, and implementation of algorithms and data structures. This book is originally published as Foundations and Trends® in Theoretical Computer Science Volume 2 Issue 4, ISSN: 1551-305X. now now the essence of knowledge Algorithms and Data Structures for External Memory Algorithms and Data Structures for External Memory Jeffrey Scott Vitter Department of Computer Science Purdue University West Lafayette Indiana, 47907–2107 USA [email protected] Boston – Delft Foundations and TrendsR in Theoretical Computer Science Published, sold and distributed by: now Publishers Inc.
    [Show full text]
  • 14.1 Sorting
    436 14. COMBINATORIAL PROBLEMS INPUT OUTPUT 14.1 Sorting Input description:Asetofn items. Problem description: Arrange the items in increasing (or decreasing) order. Discussion: Sorting is the most fundamental algorithmic problem in computer science. Learning the different sorting algorithms is like learning scales for a mu- sician. Sorting is the first step in solving a host of other algorithm problems, as shown in Section 4.2 (page 107). Indeed, “when in doubt, sort” is one of the first rules of algorithm design. Sorting also illustrates all the standard paradigms of algorithm design. The re- sult is that most programmers are familiar with many different sorting algorithms, which sows confusion as to which should be used for a given application. The following criteria can help you decide: • How many keys will you be sorting? – For small amounts of data (say n ≤ 100), it really doesn’t matter much which of the quadratic-time algorithms you use. Insertion sort is faster, simpler, and less likely to be buggy than bubblesort. Shellsort is closely related to, but much faster than, insertion sort, but it involves looking up the right insert sequences in Knuth [Knu98]. When you have more than 100 items to sort, it is important to use an O(n lg n)-time algorithm like heapsort, quicksort, or mergesort. There are various partisans who favor one of these algorithms over the others, but since it can be hard to tell which is fastest, it usually doesn’t matter. Once you get past (say) 5,000,000 items, it is important to start thinking about external-memory sorting algorithms that minimize disk access.
    [Show full text]
  • External Sorting and Query Evaluation (R&G Ch
    Faloutsos 15-415 CMU SCS CMU SCS Why Sort? Carnegie Mellon Univ. Dept. of Computer Science 15-415 - Database Applications Lecture 11: external sorting and query evaluation (R&G ch. 13 and 14) Faloutsos 15-415 1 Faloutsos 15-415 2 CMU SCS CMU SCS Why Sort? Outline • select ... order by – e.g., find students in increasing gpa order • two-way merge sort • bulk loading B+ tree index. • external merge sort • duplicate elimination (select distinct) • fine-tunings • select ... group by • B+ trees for sorting • Sort-merge join algorithm involves sorting. Faloutsos 15-415 3 Faloutsos 15-415 4 CMU SCS CMU SCS 2-Way Sort: Requires 3 Buffers Two-Way External Merge Sort • Pass 0: Read a page, sort it, write it. 3,4 6,2 9,4 8,7 5,6 3,1 2 Input file • Each pass we read + PASS 0 – only one buffer page is used 3,4 2,6 4,9 7,8 5,6 1,3 2 1-page runs write each page in file. PASS 1 4,7 1,3 • Pass 1, 2, 3, …, etc.: requires 3 buffer pages 2,3 2-page runs 4,6 8,9 5,6 2 – merge pairs of runs into runs twice as long PASS 2 2,3 – three buffer pages used. 4,4 1,2 4-page runs 6,7 3,5 8,9 6 PASS 3 INPUT 1 1,2 OUTPUT 2,3 INPUT 2 3,4 8-page runs 4,5 6,6 Main memory buffers Disk Disk 7,8 Faloutsos 15-415 5 Faloutsos 15-415 9 6 1 Faloutsos 15-415 CMU SCS CMU SCS Two-Way External Merge Sort Two-Way External Merge Sort 3,4 6,2 9,4 8,7 5,6 3,1 2 Input file 3,4 6,2 9,4 8,7 5,6 3,1 2 Input file • Each pass we read + PASS 0 • Each pass we read + PASS 0 3,4 2,6 4,9 7,8 5,6 1,3 2 1-page runs 3,4 2,6 4,9 7,8 5,6 1,3 2 1-page runs write each page in file.
    [Show full text]
  • 8 File Processing and External Sorting
    8 File Processing and External Sorting In earlier chapters we discussed basic data structures and algorithms that operate on data stored in main memory. Sometimes the application at hand requires that large amounts of data be stored and processed, so much data that they cannot all fit into main memory. In that case, the data must reside on disk and be brought into main memory selectively for processing. You probably already realize that main memory access is much faster than ac- cess to data stored on disk or other storage devices. In fact, the relative difference in access times is so great that efficient disk-based programs require a different ap- proach to algorithm design than most programmers are used to. As a result, many programmers do a poor job when it comes to file processing applications. This chapter presents the fundamental issues relating to the design of algo- rithms and data structures for disk-based applications. We begin with a descrip- tion of the significant differences between primary memory and secondary storage. Section 8.2 discusses the physical aspects of disk drives. Section 8.3 presents basic methods for managing buffer pools. Buffer pools will be used several times in the following chapters. Section 8.4 discusses the C++ model for random access to data stored on disk. Sections 8.5 to 8.8 discuss the basic principles of sorting collections of records too large to fit in main memory. 8.1 Primary versus Secondary Storage Computer storage devices are typically classified into primary or main memory and secondary or peripheral storage.
    [Show full text]
  • External Sort in Data Structure with Example
    External Sort In Data Structure With Example Tawie and new Emmit crucified his stutter amuses impound inflexibly. Double-tongued Rad impressed jingoistically while Douglas always waver his eye chromatograph shallowly, he analyzing so evilly. Lexicographical Pate hutches salaciously. Thus it could be implemented, external sort exist, for satisfying conditions of the number of the number of adding one Any particular order as follows the items into the increased capacity in external data structure with a linked list in the heap before the web log file. Such loading and external sort in data structure with example, external sorting algorithms it can answer because all. For production work, I still suggest that you use a database. Many uses external sorting algorithms. The overall solution is found by describing a method to merge two sorted sequences. In the latter case, we copy this run to the appropriate tape. Repeatedly, the smallest item is removed from the selection tree and placed in the output stream, and the next item from the input file is inserted in its place as a leaf in the selection tree. We will do this for the randomized version. Was a run legths as is related data. In applications a gap using the example, the optimal sorting on the numbers from what is internal sorting algorithms are twice as popping the copies the practical. The external sorting. Till now, we saw that sorting is an important term in any database system. Note that in a rooted tree, the root has no parent and all other nodes have a single parent.
    [Show full text]
  • Leyenda: an Adaptive, Hybrid Sorting Algorithm for Large Scale Data with Limited Memory
    Leyenda: An Adaptive, Hybrid Sorting Algorithm for Large Scale Data with Limited Memory Yuanjing Shi Zhaoxing Li University of Illinois at Urbana-Champaign University of Illinois at Urbana-Champaign Abstract tems. Joins are the most computationally expensive among Sorting is the one of the fundamental tasks of modern data all SparkSQL operators [6]. With its distributed nature, Spark management systems. With Disk I/O being the most-accused chooses proper strategies for join based on joining keys and performance bottleneck [14] and more computation-intensive size of data. Overall, there are three different join implementa- workloads, it has come to our attention that in heterogeneous tions, Broadcast Hash Join, Shuffle Hash Join and Sort Merge environment, performance bottleneck may vary among differ- Join. Broadcast Hash Join is thefirst choice if one side of the ent infrastructure. As a result, sort kernels need to be adap- joining table is broadcastable, which means its size is smaller tive to changing hardware conditions. In this paper, we pro- than a preset ten-megabyte threshold. Although it is the most pose Leyenda, a hybrid, parallel and efficient Radix Most- performant, it is only applicable to a small set of real world Significant-Bit (MSB) MergeSort algorithm, with utilization use cases. Between Shuffle Hash Join and Sort Merge Join, of local thread-level CPU cache and efficient disk/memory since Spark 2.3 [2], Sort Merge Join is always preferred over I/O. Leyenda is capable of performing either internal or ex- Shuffle Hash Join. ternal sort efficiently, based on different I/O and processing The implementation of Sparks’ Sort Merge Join is simi- conditions.
    [Show full text]
  • Cache-Oblivious Sorting (1999; Frigo, Leiserson, Prokop, Ramachandran)
    Cache-Oblivious Sorting (1999; Frigo, Leiserson, Prokop, Ramachandran) Gerth Stølting Brodal, Universty of Aarhus, www.daimi.au.dk/˜gerth INDEX TERMS: Sorting, permuting, cache-obliviousness. SYNONYMS: Funnet sort 1 PROBLEM DEFINITION Sorting a set of elements is one of the most well studied computational problems. In the cache- oblivious setting the first study of sorting was presented in 1999 in the seminal paper by Frigo et al. [8] that introduced the cache-oblivious framework for developing algorithms aimed at machines with (unknown) hierarchical memory. Model In the cache-oblivious setting the computational model is a machine with two levels of memory: a cache of limited capacity and a secondary memory of infinite capacity. The capacity of the cache is assumed to be M elements and data is moved between the two levels of memory in blocks of B consecutive elements. Computations can only be performed on elements stored in cache, i.e. elements from secondary memory need to be moved to the cache before operations can access the elements. Programs are written as acting directly on one unbounded memory, i.e. programs are like standard RAM programs. The necessary block transfers between cache and secondary memory are handled automatically by the model, assuming an optimal offline cache replacement strategy. The core assumption of the cache-oblivious model is that M and B are unknown to the algorithm whereas in the related I/O model introduced by Aggarwal and Vitter [1] the algorithms know M and B and the algorithms perform the block transfers explicitly. A throughout discussion of the cache-oblivious model and its relation to multi-level memory hierarchies is given in [8].
    [Show full text]
  • Engineering a Cache Oblivious Sorting Algorithm Gerth Brodal, Rolf Fagerberg and Kristoffer Vinther
    Engineering A Cache Oblivious Sorting Algorithm Gerth Brodal, Rolf Fagerberg and Kristoffer Vinther Presenter: Rawn Henry February 25 2019 Memory Hierarchy Typical cache sizes: L1 Cache: 32kB – 64kB L2 Cache: 256kB – 512kB L3 Cache: 8MB – 32 MB Main Memory: 4GB – 32 GB Disk: Terabytes Observations ØMemory accesses are usually the bottleneck in algorithms since CPU is a lot faster than main memory ØWant to minimize the number of times we have get data from slow memory by maximizing data reuse Cache Aware vs Cache Oblivious ØBoth have cache friendly access patterns. ØCache aware algorithms depend on the parameters of the architecture such as cache size and depth of hierarchy whereas cache oblivious algorithms do not. ØCache aware algorithms tend to be faster but are not portable without retuning. Ø We want speed of cache friendly access but portability of cache oblivious algorithm. Funnel Sort Algorithm Description ØRecursively sort n⅓ contiguous arrays of n⅔ items ØMerge the sorted sequences using a n⅓ -merger ØBase case is a merger with k = 2 ØSimilar to merge sort but different merging routine Funnel Sort Picture Taken from 6.172 lecture 15 Fall 2018 Sorting bounds Quick sort Ø Work = O(nlgn) ØCache usage = O(n/B)lgn) Funnel sort ØWork = O(nlgn) ØCache = O((n/B)logMn) Issues with Funnel Sort ØIn practice it is not always possible to split K-Funnel into √K bottom funnels, it may lead to rounding errors. ØvEB layout performs well for binary trees but does not perform well for complex data structures. Lazy Funnel Sort ØTo overcome rounding
    [Show full text]