Varicellaria Velata Anteriormente Llamada Pertusaria Velata
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Additions to the Lichenized Order Pertusariales (Lichenized Ascomycetes) in Pakistan
Nova Hedwigia, Vol. 111 (2020), Issue 1-2, 219–229 Article Stuttgart, August 2020 Additions to the lichenized order Pertusariales (lichenized Ascomycetes) in Pakistan Kamran Habib1*, Rizwana Zulfiqar1, Abdul Nasir Khalid1 1 Fungal Biology and Systematics Lab, Department of Botany, University of the Punjab, Lahore, Pakistan * Corresponding author: [email protected] With 4 figures Abstract: We report three species of Pertusariales (lichenized Ascomycota) from Pakistan. Per- tusaria australis (Pertusariaceae) and Varicellaria hemisphaerica (Ochrolechiaceae) are reported for the first time from Pakistan, while Lepra albescens (Pertusariaceae) is reported for the second time only. The taxonomic characters of each species are given, along with an ITS-based phyloge- netic analysis and notes on ecology and distribution. Pertusaria australis is here being redescribed for the first time after its first description in 1888. Key words: Azad Jammu Kashmir; Neelam Valley; phylogeny; taxonomy Introduction Pertusariales M.Choisy ex D.Hawksw. & O.E.Erikss is a medium-sized order, comprising 24 genera and 907 species of predominantly crustose to subfruticose lichens in six fami- lies (Schmitt et al. 2006, Lücking et al. 2017). The order has a worldwide distribution, occurring in all major ecosystems, colonising bark, wood, rock or soil, or overgrowing bryophytes and other small plants. Its species are characterized by disciform to poriform apothecia, thick-walled asci and generally large ascospores (Schmitt et al. 2006). The chemical composition is diverse, representing different biochemical substance classes which together with the morphological characteristics and anatomical, supporting the delimitation of many taxa, making secondary chemistry an important identification tool (Dibben 1980, Hanko 1983, Hanko et al. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 6 January 2021 Pertusariales: Pertusariaceae Cover image: Pertusaria pertusa, on bark of Acer pseudoplatanus, near Pitlochry, E Perthshire. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J. -
1 a Preliminary World-Wide Key to the Lichen Genus Pertusaria (Including
Archer & Elix, World-wide key to Petrusaria (including Lepra), Aug. 2018 A Preliminary World-wide Key to the Lichen Genus Pertusaria (including Lepra species) A.W. Archer & J.A. Elix The lichen genus Pertusaria (Pertusariaceae) is widely distributed throughout the world, from equatorial to polar regions (Dibben 1980; Lumbsch & Nash 2001). Species may grow on bark, rock, soil, plant débris and mosses and are differentiated by the apothecial structure (disciform or verruciform), the number and structure of the ascospores (1, 2, 4 or 8 per ascus, smooth- or rough-walled ascospores) and the chemistry (Dibben 1980; Archer 1997). Chemistry has been recognised as an important taxonomic tool in the identification of species in the genus Pertusaria (Lumbsch 1998). The chemistry of the genus Pertusaria has been reported in many publications. Oshio (1968) reported the colour reactions of Japanese species and the compounds producing these colours were subsequently identified by Dibben (1975) who later published the chemistry of North American Pertusaria (1980). Similarly, Poelt and Vĕzda (1981) described the colour reactions of European species of Pertusaria and the identity of these compounds was later determined by Hanko (1983). Additional synonymy and chemical data for a range of European taxa was reported by Niebel-Lohmann and Feuerer (1992). Chemical data on many type specimens was reported by Archer (1993, 1995) and the chemistry of Australian Pertusaria published (Archer 1997). Additional type specimens hace since been examined and their chemistries determined. A current Key to European Pertusaria (Sipman, www.bgbm.org/BGBM/Staff/Wiss/Sipman/keys/perteuro.htm) contains much chemical information on European taxa, which has been included in this Key. -
The Field Museum 2003 Annual Report to the Board Of
THE FIELD MUSEUM 2003 ANNUAL REPORT TO THE BOARD OF TRUSTEES ACADEMIC AFFAIRS Office of Academic Affairs, The Field Museum 1400 South Lake Shore Drive Chicago, IL 60605-2496 USA Phone (312) 665-7811 Fax (312) 665-7806 http://www.fieldmuseum.org/ 1 - This Report Printed on Recycled Paper - April 2, 2004 2 CONTENTS 2003 Annual Report....................................................................................................................................................3 Collections and Research Committee ....................................................................................................................11 Academic Affairs Staff List......................................................................................................................................12 Publications, 2003 .....................................................................................................................................................17 Active Grants, 2003...................................................................................................................................................38 Conferences, Symposia, Workshops and Invited Lectures, 2003.......................................................................45 Museum and Public Service, 2003 ..........................................................................................................................54 Fieldwork and Research Travel, 2003 ....................................................................................................................64 -
Large Differences in Carbohydrate Degradation and Transport Potential
bioRxiv preprint doi: https://doi.org/10.1101/2021.08.01.454614; this version posted August 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Large differences in carbohydrate degradation and 2 transport potential in the genomes of lichen fungal 3 symbionts 4 5 Philipp Resl1,2, Adina R. Bujold3, Gulnara Tagirdzhanova3, Peter Meidl2, Sandra Freire Rallo4, 6 Mieko Kono5, Samantha Fernández-Brime5, Hörður Guðmundsson7, Ólafur Sigmar 7 Andrésson7, Lucia Muggia8, Helmut Mayrhofer1, John P. McCutcheon9, Mats Wedin5, Silke 8 Werth2, Lisa M. Willis3, Toby Spribille3* 9 10 1University of Graz, Institute of Biology, Universitätsplatz 2, 8010 Graz, Austria 11 2Ludwig-Maximilians-University Munich, Faculty of Biology Department 1, Diversity and 12 Evolution of Plants, Menzingerstraße 67, 80638 Munich, Germany 13 3University of Alberta, Biological Sciences CW405, Edmonton, AB T6G 2R3 Canada 14 4Rey Juan Carlos University, Departamento de Biología y Geología, Física y Química 15 Inorgánica, Móstoles, Spain. 16 5SWedish Museum of Natural History, Botany Department, PO Box 50007, SE10405 17 Stockholm, SWeden 18 7Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102 19 Reykjavík, Iceland 20 8University of Trieste, Department of Life Sciences, via L. Giorgieri 10, 34127 Trieste, Italy 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.08.01.454614; this version posted August 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
The 2018 Classification and Checklist of Lichenicolous Fungi, with 2000 Non- Lichenized, Obligately Lichenicolous Taxa Author(S): Paul Diederich, James D
The 2018 classification and checklist of lichenicolous fungi, with 2000 non- lichenized, obligately lichenicolous taxa Author(s): Paul Diederich, James D. Lawrey and Damien Ertz Source: The Bryologist, 121(3):340-425. Published By: The American Bryological and Lichenological Society, Inc. URL: http://www.bioone.org/doi/full/10.1639/0007-2745-121.3.340 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. The 2018 classification and checklist of lichenicolous fungi, with 2000 non-lichenized, obligately lichenicolous taxa Paul Diederich1,5, James D. Lawrey2 and Damien Ertz3,4 1 Musee´ national d’histoire naturelle, 25 rue Munster, L–2160 Luxembourg, Luxembourg; 2 Department of Biology, George Mason University, Fairfax, VA 22030-4444, U.S.A.; 3 Botanic Garden Meise, Department of Research, Nieuwelaan 38, B–1860 Meise, Belgium; 4 Fed´ eration´ Wallonie-Bruxelles, Direction Gen´ erale´ de l’Enseignement non obligatoire et de la Recherche scientifique, rue A. -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 5 January 2021 Pertusariales: Ochrolechiaceae Cover image: Ochrolechia androgyna, on bark of Quercus petraea, Rydal Park, Westmorland. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J. -
Phylogeny of the Family Cladoniaceae (Lecanoromycetes, Ascomycota) Based on Sequences of Multiple Loci
Cladistics Cladistics 35 (2019) 351–384 10.1111/cla.12363 Phylogeny of the family Cladoniaceae (Lecanoromycetes, Ascomycota) based on sequences of multiple loci Soili Stenroosa,*,†,RaquelPino-Bodasb,*,†,‡,JaakkoHyvonen€ a, Helge Thorsten Lumbschc and Teuvo Ahtia aFinnish Museum of Natural History, Botany Unit, University of Helsinki, PO Box 47, FI-00014, Helsinki, Finland; bReal Jardın Botanico, CSIC, Plaza de Murillo 2, 28014, Madrid, Spain; cScience & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL, 60605, USA Accepted 15 October 2018 Abstract Cladoniaceae is a family of lichenized fungi that belongs to the Lecanorales, Ascomycota. The family is distributed widely, although several genera are restricted to the Southern Hemisphere. The circumscriptions of the genera and species in the family have traditionally been based on thallus morphology, the type of vegetative propagules and the secondary metabolites. However, numerous species are highly variable phenotypically, making their delimitation problematic. In the present study a new phy- logeny of Cladoniaceae is constructed using five loci (ITS rDNA, IGS rDNA, RPB2, RPB1, EF-1a) from a worldwide sample of 643 specimens representing 304 species. Cladoniaceae was resolved as a monophyletic group. The circumscription of the gen- era and the relationships among them are discussed. Pycnothelia, Carassea and Metus are closely related, forming a sister clade to the larger genus Cladonia. Cladia in its recent wide sense turned out to be paraphyletic, including species that have been rec- ognized in Thysanothecium and Notocladonia. Cladonia was resolved as monophyletic, with C. wainioi as the earliest diverging lineage. Eleven major clades were resolved in Cladonia. No synapomorphies were found for most of them.